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test_bibrank_selfcites.py
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Fri, Dec 20, 21:28

test_bibrank_selfcites.py
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# -*- coding: utf-8 -*-
##
## This file is part of Invenio.
## Copyright (C) 2011, 2012 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your option) any later version.
##
## Invenio is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
## General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Invenio; if not, write to the Free Software Foundation, Inc.,
## 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA.
"""Unit tests for the search engine query parsers."""
from invenio.testutils import InvenioTestCase
import sys
from StringIO import StringIO
from datetime import datetime, timedelta
from invenio.testsuite import make_test_suite, run_test_suite
class SelfCitesIndexerTests(InvenioTestCase):
"""Test utility functions for the summarizer components"""
def setUp(self):
from invenio.bibrank_selfcites_task import fill_self_cites_tables
fill_self_cites_tables({'algorithm': 'simple'})
def test_get_personids_from_record(self):
from invenio.bibrank_selfcites_indexer import get_personids_from_record
get_personids_from_record(1)
def test_get_authors_tags(self):
"""test_get_authors_tags
We don't care about the value since it's
customizable but verify that it doesn't error
"""
from invenio.bibrank_selfcites_indexer import get_authors_tags
tags = get_authors_tags()
self.assertEqual(len(tags), 4)
def test_get_authors_from_record(self):
from invenio.bibrank_selfcites_indexer import get_authors_from_record
from invenio.bibrank_selfcites_indexer import get_authors_tags
from invenio.config import CFG_BIBRANK_SELFCITES_USE_BIBAUTHORID
old_config = CFG_BIBRANK_SELFCITES_USE_BIBAUTHORID
tags = get_authors_tags()
CFG_BIBRANK_SELFCITES_USE_BIBAUTHORID = 0
self.assert_(get_authors_from_record(1, tags))
CFG_BIBRANK_SELFCITES_USE_BIBAUTHORID = 1
get_authors_from_record(1, tags)
CFG_BIBRANK_SELFCITES_USE_BIBAUTHORID = old_config
def test_get_collaborations_from_record(self):
from invenio.bibrank_selfcites_indexer import get_collaborations_from_record
from invenio.bibrank_selfcites_indexer import get_authors_tags
tags = get_authors_tags()
self.assert_(not get_collaborations_from_record(1, tags))
def test_fetch_references(self):
from invenio.bibrank_selfcites_indexer import fetch_references
self.assertEqual(fetch_references(1), set())
def test_get_precomputed_self_cites_list(self):
from invenio.bibrank_selfcites_indexer import \
get_precomputed_self_cites_list
counts = get_precomputed_self_cites_list([1, 2, 3, 4])
self.assertEqual(counts, ((1, 0), (2, 0), (3, 0), (4, 0)))
def test_get_precomputed_self_cites(self):
from invenio.bibrank_selfcites_indexer import \
get_precomputed_self_cites
ret = get_precomputed_self_cites(1)
self.assertEqual(ret, 0)
def test_compute_simple_self_citations(self):
from invenio.bibrank_selfcites_indexer import \
compute_simple_self_citations
from invenio.bibrank_selfcites_indexer import get_authors_tags
tags = get_authors_tags()
ret = compute_simple_self_citations(1, tags)
self.assertEqual(ret, set())
def test_compute_friends_self_citations(self):
from invenio.bibrank_selfcites_indexer import \
compute_friends_self_citations
from invenio.bibrank_selfcites_indexer import get_authors_tags
tags = get_authors_tags()
ret = compute_friends_self_citations(1, tags)
self.assertEqual(ret, set())
def test_get_self_citations_count(self):
from invenio.bibrank_selfcites_indexer import get_self_citations_count
ret = get_self_citations_count([1, 2, 3, 4])
self.assertEqual(ret, 0)
def test_update_self_cites_tables(self):
from invenio.bibrank_selfcites_indexer import update_self_cites_tables
from invenio.bibrank_selfcites_indexer import get_authors_tags
tags = get_authors_tags()
config = {}
update_self_cites_tables(1, config, tags)
def test_store_record(self):
from invenio.bibrank_selfcites_indexer import store_record
from invenio.bibrank_selfcites_indexer import get_authors_from_record
from invenio.bibrank_selfcites_indexer import get_authors_tags
from invenio.dbquery import run_sql
tags = get_authors_tags()
recid = 1
authors = get_authors_from_record(recid, tags)
sql = 'DELETE FROM rnkRECORDSCACHE WHERE id_bibrec = %s'
run_sql(sql, (recid,))
store_record(recid, authors)
sql = 'SELECT count(*) FROM rnkRECORDSCACHE WHERE id_bibrec = %s'
count = run_sql(sql, (recid,))[0][0]
self.assert_(count)
def test_get_author_coauthors_list(self):
from invenio.bibrank_selfcites_indexer import get_author_coauthors_list
from invenio.bibrank_selfcites_indexer import get_authors_from_record
from invenio.bibrank_selfcites_indexer import get_authors_tags
tags = get_authors_tags()
config = {'friends_threshold': 3}
authors = get_authors_from_record(1, tags)
self.assert_(get_author_coauthors_list(authors, config))
def test_store_record_coauthors_with_some_deleted(self):
from invenio.bibrank_selfcites_indexer import store_record_coauthors
from invenio.bibrank_selfcites_indexer import get_authors_from_record
from invenio.bibrank_selfcites_indexer import get_authors_tags
from invenio.dbquery import run_sql
tags = get_authors_tags()
config = {'friends_threshold': 3}
recid = 1
authors = get_authors_from_record(recid, tags)
sql = 'DELETE FROM rnkEXTENDEDAUTHORS WHERE id = %s'
run_sql(sql, (recid,))
store_record_coauthors(recid, authors, [1], authors, config)
sql = 'SELECT count(*) FROM rnkEXTENDEDAUTHORS WHERE id = %s'
count = run_sql(sql, (recid,))[0][0]
self.assert_(count)
def test_store_record_coauthors_with_none_deleted(self):
from invenio.bibrank_selfcites_indexer import store_record_coauthors
from invenio.bibrank_selfcites_indexer import get_authors_from_record
from invenio.bibrank_selfcites_indexer import get_authors_tags
from invenio.dbquery import run_sql
tags = get_authors_tags()
recid = 1
config = {'friends_threshold': 3}
authors = get_authors_from_record(recid, tags)
sql = 'DELETE FROM rnkEXTENDEDAUTHORS WHERE id = %s'
run_sql(sql, (recid,))
store_record_coauthors(recid, authors, [], authors, config)
sql = 'SELECT count(*) FROM rnkEXTENDEDAUTHORS WHERE id = %s'
count = run_sql(sql, (recid,))[0][0]
self.assert_(count)
def test_get_record_coauthors(self):
from invenio.bibrank_selfcites_indexer import get_record_coauthors
self.assert_(get_record_coauthors(1))
class SelfCitesTaskTests(InvenioTestCase):
def test_check_options(self):
from invenio.bibrank_selfcites_task import check_options
old_stderr = sys.stderr
sys.stderr = StringIO()
try:
self.assert_(not check_options())
finally:
sys.stderr = old_stderr
def test_parse_option(self):
from invenio.bibrank_selfcites_task import parse_option
parse_option('-a', None, None, None)
parse_option('-m', None, None, None)
parse_option('-c', '1', None, None)
parse_option('-r', '1', None, None)
parse_option('--recids', '1-10', None, None)
parse_option('-r', '1,2,3-6', None, None)
parse_option('--rebuild', None, None, None)
def test_compute_and_store_self_citations(self):
from invenio.bibrank_selfcites_indexer import get_authors_tags
from invenio.bibrank_selfcites_task import compute_and_store_self_citations
from invenio.bibrank_selfcites_task import get_citations_fun
from invenio.bibrank_selfcites_indexer import ALL_ALGORITHMS
tags = get_authors_tags()
for algorithm in ALL_ALGORITHMS:
citation_fun = get_citations_fun(algorithm=algorithm)
compute_and_store_self_citations(1, tags, citation_fun)
def test_rebuild_tables(self):
from invenio.bibrank_selfcites_task import rebuild_tables
from invenio.bibrank_selfcites_indexer import ALL_ALGORITHMS
for algorithm in ALL_ALGORITHMS.iterkeys():
config = {'algorithm': algorithm, 'friends_threshold': 3}
assert rebuild_tables(config)
def test_fetch_bibauthorid_last_update(self):
from invenio.bibrank_selfcites_task import \
fetch_bibauthorid_last_update
self.assert_(fetch_bibauthorid_last_update())
def test_fetch_index_update(self):
from invenio.bibrank_selfcites_task import fetch_index_update
self.assert_(fetch_index_update())
def test_fetch_records(self):
from invenio.bibrank_selfcites_task import fetch_records
old_date = datetime(year=1900, month=1, day=1)
future_date = datetime.now() + timedelta(days=1)
self.assert_(fetch_records(old_date, future_date))
self.assert_(not fetch_records(future_date, future_date))
def test_fetch_concerned_records(self):
from invenio.bibrank_selfcites_task import fetch_concerned_records, \
store_last_updated, \
get_bibrankmethod_lastupdate
name = 'selfcites'
old_date = datetime(year=1900, month=1, day=1).strftime("%Y-%m-%d %H:%M:%S")
try:
original_date = get_bibrankmethod_lastupdate(name)
except IndexError:
original_date = old_date
store_last_updated(name, old_date)
self.assert_(fetch_concerned_records('selfcites'))
future_date = datetime.now() + timedelta(days=1)
store_last_updated(name, future_date)
self.assert_(not fetch_concerned_records('selfcites'))
# Restore value in db
store_last_updated(name, original_date)
def test_process_updates(self):
from invenio.bibrank_selfcites_task import process_updates
process_updates('selfcites')
def test_has_algorithms(self):
from invenio.bibrank_selfcites_indexer import ALL_ALGORITHMS
self.assert_(ALL_ALGORITHMS)
def test_process_one(self):
from invenio.bibrank_selfcites_indexer import get_authors_tags
from invenio.bibrank_selfcites_task import process_one
from invenio.bibrank_selfcites_task import get_citations_fun
from invenio.bibrank_selfcites_indexer import ALL_ALGORITHMS
tags = get_authors_tags()
for algorithm in ALL_ALGORITHMS:
citation_fun = get_citations_fun(algorithm=algorithm)
process_one(1, tags, citation_fun)
def test_empty_self_cites_tables(self):
from invenio.bibrank_selfcites_task import empty_self_cites_tables
from invenio.dbquery import run_sql
empty_self_cites_tables()
counts = [
run_sql('SELECT count(*) from rnkRECORDSCACHE')[0][0],
run_sql('SELECT count(*) from rnkEXTENDEDAUTHORS')[0][0],
run_sql('SELECT count(*) from rnkSELFCITES')[0][0],
]
self.assertEqual(counts, [0, 0, 0])
def test_fill_self_cites_tables(self):
from invenio.bibrank_selfcites_task import fill_self_cites_tables
from invenio.dbquery import run_sql
config = {'algorithm':'friends', 'friends_threshold': 3}
fill_self_cites_tables(config)
counts = [
run_sql('SELECT count(*) from rnkRECORDSCACHE')[0][0],
run_sql('SELECT count(*) from rnkEXTENDEDAUTHORS')[0][0],
run_sql('SELECT count(*) from rnkSELFCITES')[0][0],
]
self.assert_(counts[0] > 0)
self.assert_(counts[1] > 0)
self.assert_(counts[2] > 0)
TEST_SUITE = make_test_suite(SelfCitesIndexerTests,
SelfCitesTaskTests)
if __name__ == "__main__":
run_test_suite(TEST_SUITE, warn_user=True)

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