dbinterface.py
No OneTemporary
Actions

Subscribers

None

File Metadata

Created: Thu, Nov 7, 10:27

dbinterface.py
View Options

	# -- coding: utf-8 --
	##
	## This file is part of Invenio.
	## Copyright (C) 2011, 2012, 2013 CERN.
	##
	## Invenio is free software; you can redistribute it and/or
	## modify it under the terms of the GNU General Public License as
	## published by the Free Software Foundation; either version 2 of the
	## License, or (at your option) any later version.
	##
	## Invenio is distributed in the hope that it will be useful, but
	## WITHOUT ANY WARRANTY; without even the implied warranty of
	## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
	## General Public License for more details.
	##
	## You should have received a copy of the GNU General Public License
	## along with Invenio; if not, write to the Free Software Foundation, Inc.,
	## 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA.

	'''
	bibauthorid_bdinterface
	This is the only file in bibauthorid which should
	use the data base. It should have an interface for
	all other files in the module.
	'''
	import invenio.bibauthorid_config as bconfig
	import numpy
	import cPickle
	from cPickle import UnpicklingError
	from invenio.utils.html import X

	import os
	import gc

	#python2.4 compatibility
	from invenio.bibauthorid_general_utils import bai_all as all

	from itertools import groupby, count, ifilter, chain, imap
	from operator import itemgetter

	from invenio.legacy.search_engine import perform_request_search
	from invenio.modules.access.engine import acc_authorize_action
	from invenio.config import CFG_SITE_URL

	from invenio.bibauthorid_name_utils import split_name_parts
	from invenio.bibauthorid_name_utils import create_canonical_name
	from invenio.bibauthorid_name_utils import create_normalized_name
	from invenio.bibauthorid_general_utils import bibauthor_print
	from invenio.bibauthorid_general_utils import update_status \
	, update_status_final
	from invenio.legacy.dbquery import run_sql

	try:
	from collections import defaultdict
	except:
	from invenio.utils.container import defaultdict


	MARC_100_700_CACHE = None

	COLLECT_INSPIRE_ID = bconfig.COLLECT_EXTERNAL_ID_INSPIREID


	def get_sql_time():
	'''
	Returns the time according to the database. The type is datetime.datetime.
	'''
	return run_sql("select now()")[0][0]


	def set_personid_row(person_id, tag, value, opt1=None, opt2=None, opt3=None):
	'''
	Inserts data and additional info into aidPERSONIDDATA
	@param person_id:
	@type person_id: int
	@param tag:
	@type tag: string
	@param value:
	@type value: string
	@param opt1:
	@type opt1: int
	@param opt2:
	@type opt2: int
	@param opt3:
	@type opt3: string
	'''
	run_sql("INSERT INTO aidPERSONIDDATA "
	"(`personid`, `tag`, `data`, `opt1`, `opt2`, `opt3`) "
	"VALUES (%s, %s, %s, %s, %s, %s)",
	(person_id, tag, value, opt1, opt2, opt3))


	def get_personid_row(person_id, tag):
	'''
	Returns all the records associated to a person and a tag.

	@param person_id: id of the person to read the attribute from
	@type person_id: int
	@param tag: the tag to read.
	@type tag: string

	@return: the data associated with a virtual author
	@rtype: tuple of tuples
	'''
	return run_sql("SELECT data, opt1, opt2, opt3 "
	"data FROM aidPERSONIDDATA "
	"WHERE personid = %s AND tag = %s",
	(person_id, tag))


	def del_personid_row(tag, person_id=None, value=None):
	'''
	Delete the value associated to the given tag for a certain person.
	Can delete all tags regardless of person_id or value, or restrict the deletion using either of
	both of them.
	@param person_id: ID of the person
	@type person_id: int
	@param tag: tag to be updated
	@type tag: string
	@param value: value to be written for the tag
	@type value: string
	'''
	if person_id:
	if value:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag=%s and data=%s", (person_id, tag, value,))
	else:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag=%s", (person_id, tag,))
	else:
	if value:
	run_sql("delete from aidPERSONIDDATA where tag=%s and data=%s", (tag, value,))
	else:
	run_sql("delete from aidPERSONIDDATA where tag=%s", (tag,))


	def get_all_papers_of_pids(personid_list):
	'''
	Get all papers of authors in a given list and sorts the results
	by bibrefrec.
	@param personid_list: list with the authors.
	@type personid_list: iteratable of integers.
	'''
	if personid_list:
	plist = list_2_SQL_str(personid_list)
	paps = run_sql("select personid, bibref_table, bibref_value, bibrec, flag "
	"from aidPERSONIDPAPERS "
	"where personid in %s "
	% plist)

	inner = set(row[1:4] for row in paps if row[4] > -2)

	return (x for x in paps if x[1:4] in inner)

	return ()


	def del_person_not_manually_claimed_papers(pid):
	'''
	Deletes papers from a person which have not been manually claimed.
	@param pid:
	@type pid: int
	'''
	run_sql("delete from aidPERSONIDPAPERS "
	"where and (flag <> '-2' and flag <> '2') and personid=%s", (pid,))

	def get_personid_from_uid(uid):
	'''
	Returns the personID associated with the provided ui.
	If the personID is already associated with the person the secon parameter is True, false otherwise.
	@param uid: userID
	@type uid: ((int,),)
	'''
	pid = run_sql("select personid from aidPERSONIDDATA where tag=%s and data=%s", ('uid', str(uid[0][0])))
	if len(pid) == 1:
	return (pid[0], True)
	else:
	return ([-1], False)

	def get_uid_from_personid(pid):
	'''
	Get the invenio user id associated to a pid if exists.
	@param pid: person_id
	@type pid: int
	'''
	uid = run_sql("select data from aidPERSONIDDATA where tag='uid' and personid = %s", (pid,))
	if uid:
	return uid[0][0]
	else:
	return None


	def get_new_personid():
	'''
	Get a free personid number
	'''
	pids = (run_sql("select max(personid) from aidPERSONIDDATA")[0][0],
	run_sql("select max(personid) from aidPERSONIDPAPERS")[0][0])

	pids = tuple(int(p) for p in pids if p != None)

	if len(pids) == 2:
	return max(*pids) + 1
	elif len(pids) == 1:
	return pids[0] + 1
	else:
	return 0

	def get_existing_personids(with_papers_only=False):
	'''
	Get a set of existing person_ids.
	@param with_papers_only: if True, returns only ids holding papers discarding ids holding only information in aidPERSONIDDATA
	@type with_papers_only: Bool
	'''
	if not with_papers_only:
	try:
	pids_data = set(map(int, zip(*run_sql("select distinct personid from aidPERSONIDDATA"))[0]))
	except IndexError:
	pids_data = set()
	else:
	pids_data = set()
	try:
	pids_pap = set(map(int, zip(*run_sql("select distinct personid from aidPERSONIDPAPERS"))[0]))
	except IndexError:
	pids_pap = set()
	return pids_data \| pids_pap


	def get_existing_result_clusters():
	'''
	Get existing relult clusters, for private use of Tortoise and merger
	'''
	return run_sql("select distinct personid from aidRESULTS")


	def create_new_person(uid= -1, uid_is_owner=False):
	'''
	Create a new person. Set the uid as owner if requested.
	@param uid: User id to associate to the newly created person
	@type uid: int
	@param uid_is_owner: If true, the person will hold the uid as owned, otherwise the id is only remembered as the creator
	@type uid_is_owner: bool
	'''
	pid = get_new_personid()
	if uid_is_owner:
	set_personid_row(pid, 'uid', str(uid))
	else:
	set_personid_row(pid, 'user-created', str(uid))
	return pid

	def create_new_person_from_uid(uid):
	'''
	Commodity stub for create_new_person(...)
	@param uid: user id
	@type uid: int
	'''
	return create_new_person(uid, uid_is_owner=True)

	def new_person_from_signature(sig, name=None):
	'''
	Creates a new person from a signature.
	@param sig: signature tuple ([100\|700],bibref,bibrec)
	@type sig: tuple
	@param name:
	@type name: string
	'''
	pid = get_new_personid()
	add_signature(sig, name, pid)
	return pid


	def add_signature(sig, name, pid):
	'''
	Inserts a signature in personid.
	@param sig: signature tuple
	@type sig: tuple
	@param name: name string
	@type name: string
	@param pid: personid to which assign the signature
	@type pid: int
	'''
	if not name:
	name = get_name_by_bibrecref(sig)
	name = create_normalized_name(split_name_parts(name))

	run_sql("INSERT INTO aidPERSONIDPAPERS "
	"(personid, bibref_table, bibref_value, bibrec, name) "
	"VALUES (%s, %s, %s, %s, %s)"
	, (pid, str(sig[0]), sig[1], sig[2], name))

	def move_signature(sig, pid, force_claimed=False, unclaim=False):
	'''
	Moves a signature to a different person id
	@param sig: signature tuple
	@type sig: tuple
	@param pid: personid
	@type pid: int
	'''
	upd = "update aidPERSONIDPAPERS set personid=%s" % pid
	if unclaim:
	upd += ',flag=0 '
	sel = " where bibref_table like '%s' and bibref_value=%s and bibrec=%s " % sig

	sql = upd + sel
	if not force_claimed:
	sql += ' and flag <> 2 and flag <> -2'

	run_sql(sql)

	def find_conflicts(sig, pid):
	'''
	Helper for merger algorithm, find signature given personid
	@param sig: signature tuple
	@type sig: tuple
	@param pid: personid id
	@type pid: integer
	'''
	return run_sql("select bibref_table, bibref_value, bibrec, flag "
	"from aidPERSONIDPAPERS where "
	"personid = %s and "
	"bibrec = %s and "
	"flag <> -2"
	, (pid, sig[2]))

	def update_request_ticket(person_id, tag_data_tuple, ticket_id=None):
	'''
	Creates / updates a request ticket for a personID
	@param: personid int
	@param: tag_data_tuples 'image' of the ticket: (('paper', '700:316,10'), ('owner', 'admin'), ('external_id', 'ticket_18'))
	@return: ticketid
	'''
	#tags: rt_owner (the owner of the ticket, associating the rt_number to the transaction)
	# rt_external_id
	# rt_paper_cornfirm, rt_paper_reject, rt_paper_forget, rt_name, rt_email, rt_whatever
	#flag: rt_number
	if not ticket_id:
	last_id = run_sql("select max(opt1) from aidPERSONIDDATA where personid=%s and tag like %s", (str(person_id), 'rt_%'))[0][0]

	if last_id:
	ticket_id = last_id + 1
	else:
	ticket_id = 1
	else:
	delete_request_ticket(person_id, ticket_id)

	for d in tag_data_tuple:
	run_sql("insert into aidPERSONIDDATA (personid, tag, data, opt1) "
	"values (%s,%s,%s,%s)",
	(str(person_id), 'rt_' + str(d[0]), str(d[1]), str(ticket_id)))

	return ticket_id


	def delete_request_ticket(person_id, ticket_id=None):
	'''
	Removes a ticket from a person_id.
	If ticket_id is not provider removes all the tickets pending on a person.
	'''
	if ticket_id:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag like %s and opt1 =%s", (str(person_id), 'rt_%', str(ticket_id)))
	else:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag like %s", (str(person_id), 'rt_%'))


	def get_all_personids_by_name(regexpr):
	'''
	Search personids matching SQL expression in the name field
	@param regexpr: string SQL regexp
	@type regexpr: string
	'''
	return run_sql("select personid, name "
	"from aidPERSONIDPAPERS "
	"where name like %s "
	"and flag > -2",
	(regexpr,))

	def get_personids_by_canonical_name(target):
	'''
	Find personids by canonical name
	@param target:
	@type target:
	'''
	pid = run_sql("select personid from aidPERSONIDDATA where "
	"tag='canonical_name' and data like %s", (target,))
	if pid:
	return run_sql("select personid, name from aidPERSONIDPAPERS "
	"where personid=%s and flag > -2", (pid[0][0],))
	else:
	return []

	def get_bibref_modification_status(bibref):
	'''
	Determines if a record attached to a person has been touched by a human
	by checking the flag.

	@param pid: The Person ID of the person to check the assignment from
	@type pid: int
	@param bibref: The paper identifier to be checked (e.g. "100:12,144")
	@type bibref: string

	returns [bool:human_modified, int:lcul]
	'''
	if not bibref:
	raise ValueError("A bibref is expected!")

	head, rec = bibref.split(',')
	table, ref = head.split(':')
	flags = run_sql("SELECT flag, lcul FROM aidPERSONIDPAPERS WHERE "
	"bibref_table = %s and bibref_value = %s and bibrec = %s"
	, (table, ref, rec))
	if flags:
	return flags[0]
	else:
	return (False, 0)


	def get_canonical_id_from_personid(pid):
	'''
	Finds the person id canonical name (e.g. Ellis_J_R_1)

	@param pid
	@type int

	@return: sql result of the request
	@rtype: tuple of tuple
	'''
	return run_sql("SELECT data FROM aidPERSONIDDATA WHERE "
	"tag = %s AND personid = %s", ('canonical_name', str(pid)))


	def get_papers_status(paper):
	'''
	Gets the personID and flag assiciated to papers
	@param papers: list of papers
	@type papers: '100:7531,9024'
	@return: (('data','personID','flag',),)
	@rtype: tuple of tuples
	'''
	head, bibrec = paper.split(',')
	_table, bibref = head.split(':')

	rets = run_sql("select PersonID, flag "
	"from aidPERSONIDPAPERS "
	"where bibref_table = %s "
	"and bibref_value = %s "
	"and bibrec = %s"
	% (head, bibrec, bibref))
	return [[paper] + list(x) for x in rets]


	def get_persons_from_recids(recids, return_alt_names=False,
	return_all_person_papers=False):
	'''
	Helper for search engine indexing. Gives back a dictionary with important info about a person, for example:
	get_persons_from_recids([1], True, True) returns
	({1: [16591L]},
	{16591L: {'alternatative_names': ['Wong, Yung Chow'],
	'canonical_id': 'Y.C.Wong.1',
	'person_records': [275304, 1, 51394, 128250, 311629]}})

	@param recids:
	@type recids:
	@param return_alt_names:
	@type return_alt_names:
	@param return_all_person_papers:
	@type return_all_person_papers:
	'''
	rec_2_pid = dict()
	pid_2_data = dict()
	all_pids = set()

	def get_canonical_name(pid):
	return run_sql("SELECT data "
	"FROM aidPERSONIDDATA "
	"WHERE tag = %s "
	"AND personid = %s",
	('canonical_name', pid))

	for rec in recids:
	pids = run_sql("SELECT personid "
	"FROM aidPERSONIDPAPERS "
	"WHERE bibrec = %s "
	" and flag > -2 ",
	(rec,))

	# for some reason python's set is faster than a mysql distinct
	pids = set(p[0] for p in pids)
	all_pids \|= pids
	rec_2_pid[rec] = list(pids)

	for pid in all_pids:
	pid_data = {}

	canonical = get_canonical_name(pid)
	#We can supposed that this person didn't have a chance to get a canonical name yet
	#because it was not fully processed by it's creator. Anyway it's safe to try to create one
	#before failing miserably
	if not canonical:
	update_personID_canonical_names([pid])
	canonical = get_canonical_name(pid)

	#assert len(canonical) == 1
	#This condition cannot hold in case claims or update daemons are run in parallel
	#with this, as it can happen that a person with papers exists for wich a canonical name
	#has not been computed yet. Hence, it will be indexed next time, so it learns.
	#Each person should have at most one canonical name, so:
	assert len(canonical) <= 1, "A person cannot have more than one canonical name"

	if len(canonical) == 1:
	pid_data = {'canonical_id' : canonical[0][0]}

	if return_alt_names:
	names = run_sql("SELECT name "
	"FROM aidPERSONIDPAPERS "
	"WHERE personid = %s "
	" and flag > -2 ",
	(pid,))
	names = set(n[0] for n in names)

	pid_data['alternatative_names'] = list(names)

	if return_all_person_papers:
	recs = run_sql("SELECT bibrec "
	"FROM aidPERSONIDPAPERS "
	"WHERE personid = %s "
	" and flag > -2 ",
	(pid,))
	recs = set(r[0] for r in recs)

	pid_data['person_records'] = list(recs)

	pid_2_data[pid] = pid_data

	return (rec_2_pid, pid_2_data)


	def get_person_db_names_count(pid, sort_by_count=True):
	'''
	Returns the set of name strings and count associated to a person id.
	The name strings are as found in the database.
	@param pid: ID of the person
	@type pid: ('2',)
	'''

	id_2_count = run_sql("select bibref_table, bibref_value "
	"from aidPERSONIDPAPERS "
	"where personid = %s "
	"and flag > -2", (pid,))

	ref100 = [refid[1] for refid in id_2_count if refid[0] == '100']
	ref700 = [refid[1] for refid in id_2_count if refid[0] == '700']

	ref100_count = dict((key, len(list(data))) for key, data in groupby(sorted(ref100)))
	ref700_count = dict((key, len(list(data))) for key, data in groupby(sorted(ref700)))

	if ref100:
	ref100_s = list_2_SQL_str(ref100, str)
	id100_2_str = run_sql("select id, value "
	"from bib10x "
	"where id in %s"
	% ref100_s)
	else:
	id100_2_str = tuple()

	if ref700:
	ref700_s = list_2_SQL_str(ref700, str)
	id700_2_str = run_sql("select id, value "
	"from bib70x "
	"where id in %s"
	% ref700_s)
	else:
	id700_2_str = tuple()

	ret100 = [(name, ref100_count[refid]) for refid, name in id100_2_str]
	ret700 = [(name, ref700_count[refid]) for refid, name in id700_2_str]

	ret = ret100 + ret700
	if sort_by_count:
	ret = sorted(ret, key=itemgetter(1), reverse=True)
	return ret


	def get_person_id_from_canonical_id(canonical_id):
	'''
	Finds the person id from a canonical name (e.g. Ellis_J_R_1)

	@param canonical_id: the canonical ID
	@type canonical_id: string

	@return: sql result of the request
	@rtype: tuple of tuple
	'''
	return run_sql("SELECT personid FROM aidPERSONIDDATA WHERE "
	"tag='canonical_name' AND data = %s", (canonical_id,))


	def get_person_names_count(pid):
	'''
	Returns the set of name strings and count associated to a person id
	@param pid: ID of the person
	@type pid: ('2',)
	@param value: value to be written for the tag
	@type value: string
	'''
	return run_sql("select name, count(name) from aidPERSONIDPAPERS where "
	"personid=%s and flag > -2 group by name", (pid,))


	def get_person_db_names_set(pid):
	'''
	Returns the set of db_name strings associated to a person id
	@param pid: ID of the person
	@type pid: 2
	'''

	names = get_person_db_names_count(pid)
	if names:
	return zip(set(zip(*names)[0]))
	else:
	return []

	def get_personids_from_bibrec(bibrec):
	'''
	Returns all the personids associated to a bibrec.
	@param bibrec: record id
	@type bibrec: int
	'''

	pids = run_sql("select distinct personid from aidPERSONIDPAPERS where bibrec=%s and flag > -2", (bibrec,))

	if pids:
	return zip(*pids)[0]
	else:
	return []

	def get_personids_and_papers_from_bibrecs(bibrecs, limit_by_name=None):
	'''
	Gives back a list of tuples (personid, set_of_papers_owned_by) limited to the given list of bibrecs.
	@param bibrecs:
	@type bibrecs:
	@param limit_by_name:
	@type limit_by_name:
	'''
	if not bibrecs:
	return []
	else:
	bibrecs = list_2_SQL_str(bibrecs)
	if limit_by_name:
	try:
	surname = split_name_parts(limit_by_name)[0]
	except IndexError:
	surname = None
	else:
	surname = None
	if not surname:
	data = run_sql("select personid,bibrec from aidPERSONIDPAPERS where bibrec in %s" % (bibrecs,))
	else:
	surname = split_name_parts(limit_by_name)[0]
	data = run_sql(("select personid,bibrec from aidPERSONIDPAPERS where bibrec in %s "
	"and name like " % bibrecs) + ' %s ', (surname + '%',))
	pidlist = [(k, set([s[1] for s in d]))
	for k, d in groupby(sorted(data, key=lambda x:x[0]), key=lambda x:x[0])]
	pidlist = sorted(pidlist, key=lambda x:len(x[1]), reverse=True)
	return pidlist

	def get_person_bibrecs(pid):
	'''
	Returns bibrecs associated with a personid
	@param pid: integer personid
	@return [bibrec1,...,bibrecN]
	'''
	papers = run_sql("select bibrec from aidPERSONIDPAPERS where personid=%s and flag > -2", (str(pid),))
	if papers:
	return list(set(zip(*papers)[0]))
	else:
	return []

	def get_person_papers(pid, flag,
	show_author_name=False,
	show_title=False,
	show_rt_status=False,
	show_affiliations=False,
	show_date=False,
	show_experiment=False):
	'''
	Get all papers of person with flag greater than flag. Gives back a dictionary like:
	get_person_papers(16591,-2,True,True,True,True,True,True) returns
	[{'affiliation': ['Hong Kong U.'],
	'authorname': 'Wong, Yung Chow',
	'data': '100:1,1',
	'date': ('1961',),
	'experiment': [],
	'flag': 0,
	'rt_status': False,
	'title': ('Isoclinic N planes in Euclidean 2N space, Clifford parallels in elliptic (2N-1) space, and the Hurwitz matrix equations',)},
	...]
	@param pid:
	@type pid:
	@param flag:
	@type flag:
	@param show_author_name:
	@type show_author_name:
	@param show_title:
	@type show_title:
	@param show_rt_status:
	@type show_rt_status:
	@param show_affiliations:
	@type show_affiliations:
	@param show_date:
	@type show_date:
	@param show_experiment:
	@type show_experiment:
	'''
	query = "bibref_table, bibref_value, bibrec, flag"
	if show_author_name:
	query += ", name"

	all_papers = run_sql("SELECT " + query + " "
	"FROM aidPERSONIDPAPERS "
	"WHERE personid = %s "
	"AND flag >= %s",
	(pid, flag))

	def format_paper(paper):
	bibrefrec = "%s:%d,%d" % paper[:3]
	ret = {'data' : bibrefrec,
	'flag' : paper[3]
	}

	if show_author_name:
	ret['authorname'] = paper[4]

	if show_title:
	ret['title'] = ""
	title = get_title_from_rec(paper[2])
	if title:
	ret['title'] = (title,)

	if show_rt_status:
	rt_count = run_sql("SELECT count(personid) "
	"FROM aidPERSONIDDATA WHERE "
	"tag like 'rt_%%' and data = %s"
	, (bibrefrec,))

	ret['rt_status'] = (rt_count[0][0] > 0)

	if show_affiliations:
	tag = '%s__u' % paper[0]
	ret['affiliation'] = get_grouped_records(paper[:3], tag)[tag]

	if show_date:
	ret['date'] = []
	date_id = run_sql("SELECT id_bibxxx "
	"FROM bibrec_bib26x "
	"WHERE id_bibrec = %s "
	, (paper[2],))

	if date_id:
	date_id_s = list_2_SQL_str(date_id, lambda x: x[0])
	date = run_sql("SELECT value "
	"FROM bib26x "
	"WHERE id in %s "
	"AND tag = %s"
	% (date_id_s, "'269__c'"))
	if date:
	ret['date'] = zip(*date)[0]


	if show_experiment:
	ret['experiment'] = []
	experiment_id = run_sql("SELECT id_bibxxx "
	"FROM bibrec_bib69x "
	"WHERE id_bibrec = %s "
	, (paper[2],))

	if experiment_id:
	experiment_id_s = list_2_SQL_str(experiment_id, lambda x: x[0])
	experiment = run_sql("SELECT value "
	"FROM bib69x "
	"WHERE id in %s "
	"AND tag = %s"
	% (experiment_id_s, "'693__e'"))
	if experiment:
	ret['experiment'] = zip(*experiment)[0]

	return ret

	return [format_paper(paper) for paper in all_papers]


	def get_persons_with_open_tickets_list():
	'''
	Finds all the persons with open tickets and returns pids and count of tickets
	@return: [[pid, ticket_count]]
	'''
	return run_sql("select personid, count(distinct opt1) from "
	"aidPERSONIDDATA where tag like 'rt_%' group by personid")

	def get_request_ticket(person_id, ticket_id=None):
	'''
	Retrieves one or many requests tickets from a person
	@param: person_id: person id integer
	@param: matching: couple of values to match ('tag', 'value')
	@param: ticket_id: ticket id (flag) value
	@returns: [[[('tag', 'value')], ticket_id]]
	[[[('a', 'va'), ('b', 'vb')], 1L], [[('b', 'daOEIaoe'), ('a', 'caaoOUIe')], 2L]]
	'''
	if ticket_id:
	tstr = " and opt1='%s' " % ticket_id
	else:
	tstr = " "
	tickets = run_sql("select tag,data,opt1 from aidPERSONIDDATA where personid=%s and "
	" tag like 'rt_%%' " + tstr , (person_id,))
	return [[[(s[0][3:], s[1]) for s in d], k] for k, d in groupby(sorted(tickets, key=lambda k: k[2]), key=lambda k: k[2])]


	def insert_user_log(userinfo, personid, action, tag, value, comment='', transactionid=0, timestamp=None, userid=''):
	'''
	Instert log entries in the user log table.
	For example of entres look at the table generation script.
	@param userinfo: username or user identifier
	@type: string
	@param personid: personid involved in the transaction
	@type: longint
	@param action: action type
	@type: string
	@param tag: tag
	@type: string
	@param value: value for the transaction
	@type: string
	@param comment: optional comment for the transaction
	@type: string
	@param transactionid: optional id for the transaction
	@type: longint

	@return: the transactionid
	@rtype: longint
	'''
	if not timestamp:
	timestamp = run_sql('select now()')[0][0]

	run_sql('insert into aidUSERINPUTLOG '
	'(transactionid,timestamp,userinfo,userid,personid,action,tag,value,comment) values '
	'(%s,%s,%s,%s,%s,%s,%s,%s,%s)',
	(transactionid, timestamp, userinfo, userid, personid,
	action, tag, value, comment))

	return transactionid


	def person_bibref_is_touched_old(pid, bibref):
	'''
	Determines if a record attached to a person has been touched by a human
	by checking the flag.

	@param pid: The Person ID of the person to check the assignment from
	@type pid: int
	@param bibref: The paper identifier to be checked (e.g. "100:12,144")
	@type bibref: string
	'''
	bibref, rec = bibref.split(",")
	table, ref = bibref.split(":")

	flag = run_sql("SELECT flag "
	"FROM aidPERSONIDPAPERS "
	"WHERE personid = %s "
	"AND bibref_table = %s "
	"AND bibref_value = %s "
	"AND bibrec = %s"
	, (pid, table, ref, rec))

	try:
	flag = flag[0][0]
	except (IndexError):
	return False

	if not flag:
	return False
	elif -2 < flag < 2:
	return False
	else:
	return True


	def confirm_papers_to_person(pid, papers, user_level=0):
	'''
	Confirms the relationship between pid and paper, as from user input.
	@param pid: id of the person
	@type pid: integer
	@param papers: list of papers to confirm
	@type papers: ((str,),) e.g. (('100:7531,9024',),)
	@return: list of tuples: (status, message_key)
	@rtype: [(bool, str), ]
	'''
	pids_to_update = set([pid])
	res = []

	for p in papers:
	bibref, rec = p.split(",")
	rec = int(rec)
	table, ref = bibref.split(":")
	ref = int(ref)
	sig = (table, ref, rec)

	#Check the status of pid: the paper should be present, either assigned or rejected
	gen_papers = run_sql("select bibref_table, bibref_value, bibrec, personid, flag, name "
	"from aidPERSONIDPAPERS "
	"where bibrec=%s "
	"and flag >= -2"
	, (rec,))

	paps = [el[0:3] for el in gen_papers if el[3] == pid and el[4] > -2]
	#run_sql("select bibref_table, bibref_value, bibrec "
	# "from aidPERSONIDPAPERS "
	# "where personid=%s "
	# "and bibrec=%s "
	# "and flag > -2"
	# , (pid, rec))

	other_paps = [el[0:3] for el in gen_papers if el[3] != pid and el[4] > -2]
	#other_paps = run_sql("select bibref_table, bibref_value, bibrec "
	# "from aidPERSONIDPAPERS "
	# "where personid <> %s "
	# "and bibrec=%s "
	# "and flag > -2"
	# , (pid, rec))

	rej_paps = [el[0:3] for el in gen_papers if el[3] == pid and el[4] == -2]
	#rej_paps = run_sql("select bibref_table, bibref_value, bibrec "
	# "from aidPERSONIDPAPERS "
	# "where personid=%s "
	# "and bibrec=%s "
	# "and flag = -2"
	# , (pid, rec))

	bibref_exists = [el[0:3] for el in gen_papers if el[0] == table and el[1] == ref and el[4] > -2]
	#bibref_exists = run_sql("select * "
	# "from aidPERSONIDPAPERS "
	# "and bibref_table=%s "
	# "and bibref_value=%s "
	# "and bibrec=%s "
	# "and flag > -2"
	# , (table, ref, rec))


	# All papers that are being claimed should be present in aidPERSONIDPAPERS, thus:
	# assert paps or rej_paps or other_paps, 'There should be at least something regarding this bibrec!'
	# should always be valid.
	# BUT, it usually happens that claims get done out of the browser/session cache which is hours/days old,
	# hence it happens that papers are claimed which no longer exists in the system.
	# For the sake of mental sanity, instead of crashing from now on we just ignore such cases.
	if not (paps or other_paps or rej_paps) or not bibref_exists:
	res.append((False, 'confirm_failure'))
	continue
	res.append((True, 'confirm_success'))

	# It should not happen that a paper is assigned more then once to the same person.
	# But sometimes it happens in rare unfortunate cases of bad concurrency circumstances,
	# so we try to fix it directly instead of crashing here.
	# Once a better solution for dealing with concurrency will be found, the following asserts
	# shall be reenabled, to allow better control on what happens.

	# assert len(paps) < 2, "This paper should not be assigned to this person more then once! %s" % paps
	# assert len(other_paps) < 2, "There should not be more then one copy of this paper! %s" % other_paps

	# if the bibrec is present with a different bibref, the present one must be moved somwhere
	# else before we can claim the incoming one
	if paps:
	for pap in paps:
	#kick out all unwanted signatures
	if sig != pap:
	new_pid = get_new_personid()
	pids_to_update.add(new_pid)
	move_signature(pap, new_pid)

	# Make sure that the incoming claim is unique and get rid of all rejections, they are useless
	# from now on
	run_sql("delete from aidPERSONIDPAPERS where bibref_table like %s and "
	" bibref_value = %s and bibrec=%s"
	, sig)

	add_signature(sig, None, pid)
	run_sql("update aidPERSONIDPAPERS "
	"set personid = %s "
	", flag = %s "
	", lcul = %s "
	"where bibref_table = %s "
	"and bibref_value = %s "
	"and bibrec = %s"
	, (pid, '2', user_level,
	table, ref, rec))

	update_personID_canonical_names(pids_to_update)
	return res


	def reject_papers_from_person(pid, papers, user_level=0):
	'''
	Confirms the negative relationship between pid and paper, as from user input.
	@param pid: id of the person
	@type pid: integer
	@param papers: list of papers to confirm
	@type papers: ((str,),) e.g. (('100:7531,9024',),)
	@return: list of tuples: (status, message_key)
	@rtype: [(bool, str), ]
	'''

	new_pid = get_new_personid()
	pids_to_update = set([pid])
	res = []

	for p in papers:
	brr, rec = p.split(",")
	table, ref = brr.split(':')

	sig = (table, ref, rec)
	# To be rejected, a record should be present!
	records = personid_name_from_signature(sig)
	# For the sake of mental sanity (see commentis in confirm_papers_to_personid, just ignore in case this paper is no longer existent
	# assert(records)
	if not records:
	res.append((False, 'reject_failure'))
	continue
	res.append((True, 'reject_success'))

	fpid, name = records[0]
	# If the record is assigned to a different person already, the rejection is meaningless
	# Otherwise, we assign the paper to someone else (not important who it will eventually
	# get moved by tortoise) and add the rejection to the current person

	if fpid == pid:
	move_signature(sig, new_pid, force_claimed=True, unclaim=True)
	pids_to_update.add(new_pid)
	run_sql("INSERT INTO aidPERSONIDPAPERS "
	"(personid, bibref_table, bibref_value, bibrec, name, flag, lcul) "
	"VALUES (%s, %s, %s, %s, %s, %s, %s)"
	, (pid, table, ref, rec, name, -2, user_level))

	update_personID_canonical_names(pids_to_update)

	return res


	def reset_papers_flag(pid, papers):
	'''
	Resets the flag associated to the papers to '0'
	@param pid: id of the person
	@type pid: integer
	@param papers: list of papers to confirm
	@type papers: ((str,),) e.g. (('100:7531,9024',),)
	@return: list of tuples: (status, message_key)
	@rtype: [(bool, str), ]
	'''
	res = []
	for p in papers:
	bibref, rec = p.split(",")
	table, ref = bibref.split(":")
	ref = int(ref)
	sig = (table, ref, rec)
	gen_papers = run_sql("select bibref_table, bibref_value, bibrec, flag "
	"from aidPERSONIDPAPERS "
	"where bibrec=%s "
	"and personid=%s"
	, (rec, pid))

	paps = [el[0:3] for el in gen_papers]
	#run_sql("select bibref_table, bibref_value, bibrec "
	# "from aidPERSONIDPAPERS "
	# "where personid=%s "
	# "and bibrec=%s "
	# , (pid, rec))

	rej_paps = [el[0:3] for el in gen_papers if el[3] == -2]
	#rej_paps = run_sql("select bibref_table, bibref_value, bibrec "
	# "from aidPERSONIDPAPERS "
	# "where personid=%s "
	# "and bibrec=%s "
	# "and flag = -2"
	# , (pid, rec))

	pid_bibref_exists = [el[0:3] for el in gen_papers if el[0] == table and el[1] == ref and el[3] > -2]
	#bibref_exists = run_sql("select * "
	# "from aidPERSONIDPAPERS "
	# "and bibref_table=%s "
	# "and bibref_value=%s "
	# "and personid=%s "
	# "and bibrec=%s "
	# "and flag > -2"
	# , (table, ref, pid, rec))

	# again, see confirm_papers_to_person for the sake of mental sanity
	# assert paps or rej_paps
	if rej_paps or not pid_bibref_exists:
	res.append((False, 'reset_failure'))
	continue
	res.append((True, 'reset_success'))
	assert len(paps) < 2

	run_sql("delete from aidPERSONIDPAPERS where bibref_table like %s and "
	"bibref_value = %s and bibrec = %s",
	(sig))
	add_signature(sig, None, pid)

	return res


	def user_can_modify_data(uid, pid):
	'''
	Return True if the uid can modify data of this personID, false otherwise.
	@param uid: the user id
	@type: int
	@param pid: the person id
	@type: int

	@return: can user mofidfy data?
	@rtype: boolean
	'''

	pid_uid = run_sql("select data from aidPERSONIDDATA where tag = %s"
	" and personid = %s", ('uid', str(pid)))

	if len(pid_uid) >= 1 and str(uid) == str(pid_uid[0][0]):
	rights = bconfig.CLAIMPAPER_CHANGE_OWN_DATA
	else:
	rights = bconfig.CLAIMPAPER_CHANGE_OTHERS_DATA

	return acc_authorize_action(uid, rights)[0] == 0


	def get_possible_bibrecref(names, bibrec, always_match=False):
	'''
	Returns a list of bibrefs for which the surname is matching
	@param names: list of names strings
	@param bibrec: bibrec number
	@param always_match: match with all the names (full bibrefs list)
	'''
	splitted_names = [split_name_parts(n) for n in names]

	bibrec_names_100 = run_sql("select o.id, o.value from bib10x o, "
	"(select i.id_bibxxx as iid from bibrec_bib10x i "
	"where id_bibrec=%s) as dummy "
	"where o.tag='100__a' AND o.id = dummy.iid",
	(str(bibrec),))
	bibrec_names_700 = run_sql("select o.id, o.value from bib70x o, "
	"(select i.id_bibxxx as iid from bibrec_bib70x i "
	"where id_bibrec=%s) as dummy "
	"where o.tag='700__a' AND o.id = dummy.iid",
	(str(bibrec),))
	# bibrec_names_100 = run_sql("select id,value from bib10x where tag='100__a' and id in "
	# "(select id_bibxxx from bibrec_bib10x where id_bibrec=%s)",
	# (str(bibrec),))
	# bibrec_names_700 = run_sql("select id,value from bib70x where tag='700__a' and id in "
	# "(select id_bibxxx from bibrec_bib70x where id_bibrec=%s)",
	# (str(bibrec),))
	bibreflist = []

	for b in bibrec_names_100:
	spb = split_name_parts(b[1])
	for n in splitted_names:
	if (n[0].lower() == spb[0].lower()) or always_match:
	if ['100:' + str(b[0]), b[1]] not in bibreflist:
	bibreflist.append(['100:' + str(b[0]), b[1]])

	for b in bibrec_names_700:
	spb = split_name_parts(b[1])
	for n in splitted_names:
	if (n[0].lower() == spb[0].lower()) or always_match:
	if ['700:' + str(b[0]), b[1]] not in bibreflist:
	bibreflist.append(['700:' + str(b[0]), b[1]])

	return bibreflist


	def user_can_modify_paper(uid, paper):
	'''
	Return True if the uid can modify this paper, false otherwise.
	If the paper is assigned more then one time (from algorithms) consider the most privileged
	assignment.
	@param uid: the user id
	@type: int
	@param paper: the paper bibref,bibrec pair x00:1234,4321
	@type: str

	@return: can user mofidfy paper attribution?
	@rtype: boolean
	'''
	bibref, rec = paper.split(",")
	table, ref = bibref.split(":")
	prow = run_sql("select personid, lcul from aidPERSONIDPAPERS "
	"where bibref_table = %s and bibref_value = %s and bibrec = %s "
	"order by lcul desc limit 0,1",
	(table, ref, rec))

	if len(prow) == 0:
	return ((acc_authorize_action(uid, bconfig.CLAIMPAPER_CLAIM_OWN_PAPERS)[0] == 0) or
	(acc_authorize_action(uid, bconfig.CLAIMPAPER_CLAIM_OTHERS_PAPERS)[0] == 0))

	min_req_acc_n = int(prow[0][1])
	req_acc = resolve_paper_access_right(bconfig.CLAIMPAPER_CLAIM_OWN_PAPERS)
	pid_uid = run_sql("select data from aidPERSONIDDATA where tag = %s and personid = %s", ('uid', str(prow[0][0])))
	if len(pid_uid) > 0:
	if (str(pid_uid[0][0]) != str(uid)) and min_req_acc_n > 0:
	req_acc = resolve_paper_access_right(bconfig.CLAIMPAPER_CLAIM_OTHERS_PAPERS)

	if min_req_acc_n < req_acc:
	min_req_acc_n = req_acc

	min_req_acc = resolve_paper_access_right(min_req_acc_n)

	return (acc_authorize_action(uid, min_req_acc)[0] == 0) and (resolve_paper_access_right(min_req_acc) >= min_req_acc_n)


	def resolve_paper_access_right(acc):
	'''
	Given a string or an integer, resolves to the corresponding integer or string
	If asked for a wrong/not present parameter falls back to the minimum privilege.
	'''
	access_dict = {bconfig.CLAIMPAPER_VIEW_PID_UNIVERSE: 0,
	bconfig.CLAIMPAPER_CLAIM_OWN_PAPERS: 25,
	bconfig.CLAIMPAPER_CLAIM_OTHERS_PAPERS: 50}

	if isinstance(acc, str):
	try:
	return access_dict[acc]
	except:
	return 0

	inverse_dict = dict([[v, k] for k, v in access_dict.items()])
	lower_accs = [a for a in inverse_dict.keys() if a <= acc]
	try:
	return inverse_dict[max(lower_accs)]
	except:
	return bconfig.CLAIMPAPER_VIEW_PID_UNIVERSE


	def get_recently_modified_record_ids(date):
	'''
	Returns the bibrecs with modification date more recent then date.
	@param date: date
	'''
	touched_papers = frozenset(p[0] for p in run_sql(
	"select id from bibrec "
	"where modification_date > %s"
	, (date,)))
	return touched_papers & frozenset(get_all_valid_bibrecs())


	def filter_modified_record_ids(bibrecs, date):
	'''
	Returns the bibrecs with modification date before the date.
	@param date: date
	'''
	return ifilter(
	lambda x: run_sql("select count(*) from bibrec "
	"where id = %s and "
	"modification_date < %s"
	, (x[2], date))[0][0]
	, bibrecs)


	def get_user_log(transactionid='', userinfo='', userid='', personID='', action='', tag='', value='', comment='', only_most_recent=False):
	'''
	Get user log table entry matching all the given parameters; all of them are optional.
	IF no parameters are given retuns the complete log table
	@param transactionid: id of the transaction
	@param userinfo: user name or identifier
	@param personid: id of the person involved
	@param action: action
	@param tag: tag
	@param value: value
	@param comment: comment
	'''
	sql_query = ('select id,transactionid,timestamp,userinfo,personid,action,tag,value,comment ' +
	'from aidUSERINPUTLOG where 1 ')
	if transactionid:
	sql_query += ' and transactionid=\'' + str(transactionid) + '\''
	if userinfo:
	sql_query += ' and userinfo=\'' + str(userinfo) + '\''
	if userid:
	sql_query += ' and userid=\'' + str(userid) + '\''
	if personID:
	sql_query += ' and personid=\'' + str(personID) + '\''
	if action:
	sql_query += ' and action=\'' + str(action) + '\''
	if tag:
	sql_query += ' and tag=\'' + str(tag) + '\''
	if value:
	sql_query += ' and value=\'' + str(value) + '\''
	if comment:
	sql_query += ' and comment=\'' + str(comment) + '\''
	if only_most_recent:
	sql_query += ' order by timestamp desc limit 0,1'
	return run_sql(sql_query)

	def list_2_SQL_str(items, f=lambda x: x):
	"""
	Concatenates all items in items to a sql string using f.
	@param items: a set of items
	@param type items: X
	@param f: a function which transforms each item from items to string
	@param type f: X:->str
	@return: "(x1, x2, x3, ... xn)" for xi in items
	@return type: string
	"""
	strs = (str(f(x)) for x in items)
	return "(%s)" % ", ".join(strs)


	def _get_authors_from_paper_from_db(paper):
	'''
	selects all author bibrefs by a given papers
	'''
	fullbibrefs100 = run_sql("select id_bibxxx from bibrec_bib10x where id_bibrec=%s", (paper,))
	if len(fullbibrefs100) > 0:
	fullbibrefs100str = list_2_SQL_str(fullbibrefs100, lambda x: str(x[0]))
	return run_sql("select id from bib10x where tag='100__a' and id in %s" % (fullbibrefs100str,))
	return tuple()

	def _get_authors_from_paper_from_cache(paper):
	'''
	selects all author bibrefs by a given papers
	'''
	try:
	ids = MARC_100_700_CACHE['brb100'][paper]['id'].keys()
	refs = [i for i in ids if '100__a' in MARC_100_700_CACHE['b100'][i][0]]
	except KeyError:
	return tuple()
	return zip(refs)

	def get_authors_from_paper(paper):
	if MARC_100_700_CACHE:
	if bconfig.DEBUG_CHECKS:
	assert _get_authors_from_paper_from_cache(paper) == _get_authors_from_paper_from_cache(paper)
	return _get_authors_from_paper_from_cache(paper)
	else:
	return _get_authors_from_paper_from_db(paper)

	def _get_coauthors_from_paper_from_db(paper):
	'''
	selects all coauthor bibrefs by a given papers
	'''
	fullbibrefs700 = run_sql("select id_bibxxx from bibrec_bib70x where id_bibrec=%s", (paper,))
	if len(fullbibrefs700) > 0:
	fullbibrefs700str = list_2_SQL_str(fullbibrefs700, lambda x: str(x[0]))
	return run_sql("select id from bib70x where tag='700__a' and id in %s" % (fullbibrefs700str,))
	return tuple()

	def _get_coauthors_from_paper_from_cache(paper):
	'''
	selects all author bibrefs by a given papers
	'''
	try:
	ids = MARC_100_700_CACHE['brb700'][paper]['id'].keys()
	refs = [i for i in ids if '700__a' in MARC_100_700_CACHE['b700'][i][0]]
	except KeyError:
	return tuple()
	return zip(refs)

	def get_coauthors_from_paper(paper):
	if MARC_100_700_CACHE:
	if bconfig.DEBUG_CHECKS:
	assert _get_coauthors_from_paper_from_cache(paper) == _get_coauthors_from_paper_from_db(paper)
	return _get_coauthors_from_paper_from_cache(paper)
	else:
	return _get_coauthors_from_paper_from_db(paper)

	def get_bibrefrec_subset(table, papers, refs):
	table = "bibrec_bib%sx" % str(table)[:-1]
	contents = run_sql("select id_bibrec, id_bibxxx from %s" % table)
	papers = set(papers)
	refs = set(refs)

	# yes, there are duplicates and we must set them
	return set(ifilter(lambda x: x[0] in papers and x[1] in refs, contents))

	def get_deleted_papers():
	return run_sql("select o.id_bibrec from bibrec_bib98x o, "
	"(select i.id as iid from bib98x i "
	"where value = 'DELETED' "
	"and tag like '980__a') as dummy "
	"where o.id_bibxxx = dummy.iid")

	def add_personID_external_id(personid, external_id_str, value):
	run_sql("insert into aidPERSONIDDATA (personid,tag,data) values (%s,%s,%s)",
	(personid, 'extid:%s' % external_id_str, value))

	def remove_personID_external_id(personid, external_id_str, value=False):
	if not value:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag=%s",
	(personid, 'extid:%s' % external_id_str))
	else:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag=%s and data=%s",
	(personid, 'extid:%s' % external_id_str, value))

	def get_personiID_external_ids(personid):
	ids = run_sql("select tag,data from aidPERSONIDDATA where personid=%s and tag like 'extid:%%'",
	(personid,))

	extids = {}
	for i in ids:
	id_str = i[0].split(':')[1]
	idd = i[1]
	try:
	extids[id_str].append(idd)
	except KeyError:
	extids[id_str] = [idd]
	return extids

	#bibauthorid_maintenance personid update private methods
	def update_personID_canonical_names(persons_list=None, overwrite=False, suggested='', overwrite_not_claimed_only=False):
	'''
	Updates the personID table creating or updating canonical names for persons
	@param: persons_list: persons to consider for the update (('1'),)
	@param: overwrite: if to touch already existing canonical names
	@param: suggested: string to suggest a canonical name for the person
	'''
	if not persons_list and overwrite:
	persons_list = set([x[0] for x in run_sql('select personid from aidPERSONIDPAPERS')])
	elif not persons_list:
	persons_list = set([x[0] for x in run_sql('select personid from aidPERSONIDPAPERS')])
	existing_cnamed_pids = set(
	[x[0] for x in run_sql('select personid from aidPERSONIDDATA where tag=%s',
	('canonical_name',))])
	persons_list = persons_list - existing_cnamed_pids

	for idx, pid in enumerate(persons_list):
	update_status(float(idx) / float(len(persons_list)), "Updating canonical_names...")
	if overwrite_not_claimed_only:
	has_claims = run_sql("select personid from aidPERSONIDPAPERS where personid = %s and flag = 2", (pid,))
	if has_claims:
	continue
	current_canonical = run_sql("select data from aidPERSONIDDATA where "
	"personid=%s and tag=%s", (pid, 'canonical_name'))

	if overwrite or len(current_canonical) == 0:
	run_sql("delete from aidPERSONIDDATA where personid=%s and tag=%s",
	(pid, 'canonical_name'))

	names = get_person_names_count(pid)
	names = sorted(names, key=lambda k: k[1], reverse=True)
	if len(names) < 1 and not suggested:
	continue
	else:
	if suggested:
	canonical_name = suggested
	else:
	canonical_name = create_canonical_name(names[0][0])

	existing_cnames = run_sql("select data from aidPERSONIDDATA "
	"where tag=%s and data like %s",
	('canonical_name', str(canonical_name) + '%'))

	existing_cnames = set(name[0].lower() for name in existing_cnames)
	for i in count(1):
	cur_try = canonical_name + '.' + str(i)
	if cur_try.lower() not in existing_cnames:
	canonical_name = cur_try
	break

	run_sql("insert into aidPERSONIDDATA (personid, tag, data) values (%s,%s,%s) ",
	(pid, 'canonical_name', canonical_name))

	update_status_final("Updating canonical_names finished.")


	def personid_get_recids_affected_since(last_timestamp):
	'''
	Returns a list of recids which have been manually changed since timestamp)
	@param: last_timestamp: last update, datetime.datetime
	'''
	vset = set(int(v[0].split(',')[1]) for v in run_sql(
	"select distinct value from aidUSERINPUTLOG "
	"where timestamp > %s", (last_timestamp,))
	if ',' in v[0] and ':' in v[0])

	pids = set(int(p[0]) for p in run_sql(
	"select distinct personid from aidUSERINPUTLOG "
	"where timestamp > %s", (last_timestamp,))
	if p[0] > 0)

	if pids:
	pids_s = list_2_SQL_str(pids)
	vset \|= set(int(b[0]) for b in run_sql(
	"select bibrec from aidPERSONIDPAPERS "
	"where personid in %s" % pids_s))

	return list(vset) # I'm not sure about this cast. It might work without it.


	def get_all_paper_records(pid, claimed_only=False):
	if not claimed_only:
	return run_sql("SELECT distinct bibrec FROM aidPERSONIDPAPERS WHERE personid = %s", (str(pid),))
	else:
	return run_sql("SELECT distinct bibrec FROM aidPERSONIDPAPERS WHERE "
	"personid = %s and flag=2 or flag=-2", (str(pid),))


	def get_all_modified_names_from_personid(since=None):
	if since:
	all_pids = run_sql("SELECT DISTINCT personid "
	"FROM aidPERSONIDPAPERS "
	"WHERE flag > -2 "
	"AND last_updated > %s"
	% since)
	else:
	all_pids = run_sql("SELECT DISTINCT personid "
	"FROM aidPERSONIDPAPERS "
	"WHERE flag > -2 ")

	return ((name[0][0], set(n[1] for n in name), len(name))
	for name in (run_sql(
	"SELECT personid, name "
	"FROM aidPERSONIDPAPERS "
	"WHERE personid = %s "
	"AND flag > -2", p)
	for p in all_pids))


	def destroy_partial_marc_caches():
	global MARC_100_700_CACHE
	MARC_100_700_CACHE = None
	gc.collect()

	def populate_partial_marc_caches():
	global MARC_100_700_CACHE

	if MARC_100_700_CACHE:
	return

	def br_dictionarize(maptable):
	gc.disable()
	md = defaultdict(dict)
	maxiters = len(set(map(itemgetter(0), maptable)))
	for i, v in enumerate(groupby(maptable, itemgetter(0))):
	if i % 1000 == 0:
	update_status(float(i) / maxiters, 'br_dictionarizing...')
	if i % 1000000 == 0:
	update_status(float(i) / maxiters, 'br_dictionarizing...GC')
	gc.collect()
	idx = defaultdict(list)
	fn = defaultdict(list)
	for _, k, z in v[1]:
	idx[k].append(z)
	fn[z].append(k)
	md[v[0]]['id'] = idx
	md[v[0]]['fn'] = fn
	update_status_final('br_dictionarizieng done')
	gc.enable()
	return md

	def bib_dictionarize(bibtable):
	return dict((i[0], (i[1], i[2])) for i in bibtable)

	update_status(.0, 'Populating get_grouped_records_table_cache')
	bibrec_bib10x = sorted(run_sql("select id_bibrec,id_bibxxx,field_number from bibrec_bib10x"))
	update_status(.125, 'Populating get_grouped_records_table_cache')
	brd_b10x = br_dictionarize(bibrec_bib10x)
	del bibrec_bib10x

	update_status(.25, 'Populating get_grouped_records_table_cache')
	bibrec_bib70x = sorted(run_sql("select id_bibrec,id_bibxxx,field_number from bibrec_bib70x"))
	update_status(.375, 'Populating get_grouped_records_table_cache')
	brd_b70x = br_dictionarize(bibrec_bib70x)
	del bibrec_bib70x

	update_status(.5, 'Populating get_grouped_records_table_cache')
	bib10x = (run_sql("select id,tag,value from bib10x"))
	update_status(.625, 'Populating get_grouped_records_table_cache')
	bibd_10x = bib_dictionarize(bib10x)
	del bib10x

	update_status(.75, 'Populating get_grouped_records_table_cache')
	bib70x = (run_sql("select id,tag,value from bib70x"))
	update_status(.875, 'Populating get_grouped_records_table_cache')
	bibd_70x = bib_dictionarize(bib70x)
	del bib70x

	update_status_final('Finished populating get_grouped_records_table_cache')
	MARC_100_700_CACHE = {'brb100':brd_b10x, 'brb700':brd_b70x, 'b100':bibd_10x, 'b700':bibd_70x}

	def _get_grouped_records_using_caches(brr, *args):
	try:
	c = MARC_100_700_CACHE['brb%s' % str(brr[0])][brr[2]]
	fn = c['id'][brr[1]]
	except KeyError:
	return dict((arg, []) for arg in args)
	if not fn or len(fn) > 1:
	#if len fn > 1 it's BAD: the same signature is at least twice on the same paper.
	#Let's default to nothing, to be on the safe side.
	return dict((arg, []) for arg in args)
	ids = set(chain(*(c['fn'][i] for i in fn)))
	tuples = [MARC_100_700_CACHE['b%s' % str(brr[0])][i] for i in ids]
	results = {}
	for t in tuples:
	present = [x for x in args if x in t[0]]
	assert len(present) <= 1
	if present:
	arg = present[0]
	try:
	results[arg].append(t[1])
	except KeyError:
	results[arg] = [t[1]]
	for arg in args:
	if arg not in results.keys():
	results[arg] = []
	return results

	def _get_grouped_records_from_db(bibrefrec, *args):
	'''
	By a given bibrefrec: mark:ref,rec this function will scan
	bibmarkx table and extract all records with tag in argc, which
	are grouped togerther with this bibrec.

	Returns a dictionary with { tag : [extracted_values] }
	if the values is not found.
	@type bibrefrec: (mark(int), ref(int), rec(int))
	'''
	table, ref, rec = bibrefrec

	target_table = "bib%sx" % (str(table)[:-1])
	mapping_table = "bibrec_%s" % target_table

	group_id = run_sql("SELECT field_number "
	"FROM %s "
	"WHERE id_bibrec = %d "
	"AND id_bibxxx = %d" %
	(mapping_table, rec, ref))

	if len(group_id) == 0:
	# unfortunately the mapping is not found, so
	# we cannot find anything
	return dict((arg, []) for arg in args)
	elif len(group_id) == 1:
	# All is fine
	field_number = group_id[0][0]
	else:
	# sounds bad, but ignore the error
	field_number = min(x[0] for x in group_id)

	grouped = run_sql("SELECT id_bibxxx "
	"FROM %s "
	"WHERE id_bibrec = %d "
	"AND field_number = %d" %
	(mapping_table, rec, int(field_number)))
	assert len(grouped) > 0, "There should be a most one grouped value per tag."
	grouped_s = list_2_SQL_str(grouped, lambda x: str(x[0]))

	ret = {}
	for arg in args:
	qry = run_sql("SELECT value "
	"FROM %s "
	"WHERE tag LIKE '%%%s%%' "
	"AND id IN %s" %
	(target_table, arg, grouped_s))
	ret[arg] = [q[0] for q in qry]

	return ret

	def get_grouped_records(bibrefrec, *args):
	if MARC_100_700_CACHE:
	if bconfig.DEBUG_CHECKS:
	assert _get_grouped_records_using_caches(bibrefrec, args) == _get_grouped_records_from_db(bibrefrec, args)
	return _get_grouped_records_using_caches(bibrefrec, *args)
	else:
	return _get_grouped_records_from_db(bibrefrec, *args)

	def get_person_with_extid(idd, match_tag=False):
	if match_tag:
	mtag = " and tag = '%s'" % 'extid:' + match_tag
	else:
	mtag = ''
	pids = run_sql("select personid from aidPERSONIDDATA where data=%s" % '%s' + mtag, (idd,))
	return set(pids)

	def get_inspire_id(p):
	'''
	Gets inspire id for a signature (bibref_table,bibref_value.bibrec)
	'''
	return get_grouped_records((str(p[0]), p[1], p[2]), str(p[0]) + '__i').values()[0]

	def get_claimed_papers_from_papers(papers):
	'''
	Given a set of papers it returns the subset of claimed papers
	@param papers: set of papers
	@type papers: frozenset
	@return: tuple
	'''
	papers_s = list_2_SQL_str(papers)
	claimed_papers = run_sql("select bibrec from aidPERSONIDPAPERS "
	"where bibrec in %s and flag = 1" % papers_s)
	return claimed_papers

	def collect_personID_external_ids_from_papers(personid, limit_to_claimed_papers=False):
	gathered_ids = {}

	if limit_to_claimed_papers:
	flag = 1
	else:
	flag = -2

	person_papers = run_sql("select bibref_table,bibref_value,bibrec from aidPERSONIDPAPERS where "
	"personid=%s and flag > %s", (personid, flag))

	if COLLECT_INSPIRE_ID:
	inspireids = []
	for p in person_papers:
	extid = get_inspire_id(p)
	if extid:
	inspireids.append(extid)
	inspireids = set((i[0] for i in inspireids))

	gathered_ids['INSPIREID'] = inspireids

	# if COLLECT_ORCID:
	# orcids = []
	# for p in person_papers:
	# extid = get_orcid(p)
	# if extid:
	# orcids.append(extid)
	# orcids = set((i[0] for i in orcids))
	# gathered_ids['ORCID'] = orcids

	# if COLLECT_ARXIV_ID:
	# arxivids = []
	# for p in person_papers:
	# extid = get_arxiv_id(p)
	# if extid:
	# arxivids.append(extid)
	# arxivids = set((i[0] for i in arxivids))
	# gathered_ids['ARXIVID'] = arxivids

	return gathered_ids

	def update_personID_external_ids(persons_list=None, overwrite=False,
	limit_to_claimed_papers=False, force_cache_tables=False):
	if force_cache_tables:
	populate_partial_marc_caches()

	if not persons_list:
	persons_list = set([x[0] for x in run_sql('select personid from aidPERSONIDPAPERS')])

	for idx, pid in enumerate(persons_list):
	update_status(float(idx) / float(len(persons_list)), "Updating external ids...")

	collected = collect_personID_external_ids_from_papers(pid, limit_to_claimed_papers=limit_to_claimed_papers)
	present = get_personiID_external_ids(pid)

	if overwrite:
	for idd in present.keys():
	for k in present[idd]:
	remove_personID_external_id(pid, idd, value=k)
	present = {}

	for idd in collected.keys():
	for k in collected[idd]:
	if idd not in present or k not in present[idd]:
	add_personID_external_id(pid, idd, k)

	if force_cache_tables:
	destroy_partial_marc_caches()

	update_status_final("Updating external ids finished.")

	def _get_name_by_bibrecref_from_db(bib):
	'''
	@param bib: bibrefrec or bibref
	@type bib: (mark, bibref, bibrec) OR (mark, bibref)
	'''
	table = "bib%sx" % str(bib[0])[:-1]
	refid = bib[1]
	tag = "%s__a" % str(bib[0])
	ret = run_sql("select value from %s where id = '%s' and tag = '%s'" % (table, refid, tag))

	assert len(ret) == 1, "A bibrefrec must have exactly one name(%s)" % str(bib)
	return ret[0][0]

	def _get_name_by_bibrecref_from_cache(bib):
	'''
	@param bib: bibrefrec or bibref
	@type bib: (mark, bibref, bibrec) OR (mark, bibref)
	'''
	table = "b%s" % bib[0]
	refid = bib[1]
	tag = "%s__a" % str(bib[0])
	ret = None
	try:
	if tag in MARC_100_700_CACHE[table][refid][0]:
	ret = MARC_100_700_CACHE[table][refid][1]
	except (KeyError, IndexError), e:
	#The GC did run and the table is not clean?
	#We might want to allow empty response here
	raise Exception(str(bib) + str(e))
	if bconfig.DEBUG_CHECKS:
	assert ret == _get_name_by_bibrecref_from_db(bib)
	return ret

	def get_name_by_bibrecref(bib):
	if MARC_100_700_CACHE:
	if bconfig.DEBUG_CHECKS:
	assert _get_name_by_bibrecref_from_cache(bib) == _get_name_by_bibrecref_from_db(bib)
	return _get_name_by_bibrecref_from_cache(bib)
	else:
	return _get_name_by_bibrecref_from_db(bib)

	def get_collaboration(bibrec):
	bibxxx = run_sql("select id_bibxxx from bibrec_bib71x where id_bibrec = %s", (str(bibrec),))

	if len(bibxxx) == 0:
	return ()

	bibxxx = list_2_SQL_str(bibxxx, lambda x: str(x[0]))

	ret = run_sql("select value from bib71x where id in %s and tag like '%s'" % (bibxxx, "710__g"))
	return [r[0] for r in ret]


	def get_key_words(bibrec):
	if bconfig.CFG_ADS_SITE:
	bibxxx = run_sql("select id_bibxxx from bibrec_bib65x where id_bibrec = %s", (str(bibrec),))
	else:
	bibxxx = run_sql("select id_bibxxx from bibrec_bib69x where id_bibrec = %s", (str(bibrec),))

	if len(bibxxx) == 0:
	return ()

	bibxxx = list_2_SQL_str(bibxxx, lambda x: str(x[0]))

	if bconfig.CFG_ADS_SITE:
	ret = run_sql("select value from bib69x where id in %s and tag like '%s'" % (bibxxx, "6531_a"))
	else:
	ret = run_sql("select value from bib69x where id in %s and tag like '%s'" % (bibxxx, "695__a"))

	return [r[0] for r in ret]


	def get_all_authors(bibrec):
	bibxxx_1 = run_sql("select id_bibxxx from bibrec_bib10x where id_bibrec = %s", (str(bibrec),))
	bibxxx_7 = run_sql("select id_bibxxx from bibrec_bib70x where id_bibrec = %s", (str(bibrec),))

	if bibxxx_1:
	bibxxxs_1 = list_2_SQL_str(bibxxx_1, lambda x: str(x[0]))
	authors_1 = run_sql("select value from bib10x where tag = '%s' and id in %s" % ('100__a', bibxxxs_1,))
	else:
	authors_1 = []

	if bibxxx_7:
	bibxxxs_7 = list_2_SQL_str(bibxxx_7, lambda x: str(x[0]))
	authors_7 = run_sql("select value from bib70x where tag = '%s' and id in %s" % ('700__a', bibxxxs_7,))
	else:
	authors_7 = []

	return [a[0] for a in authors_1] + [a[0] for a in authors_7]

	def get_title_from_rec(rec):
	"""
	Returns the name of the paper like str if found.
	Otherwise returns None.
	"""
	title_id = run_sql("SELECT id_bibxxx "
	"FROM bibrec_bib24x "
	"WHERE id_bibrec = %s",
	(rec,))

	if title_id:
	title_id_s = list_2_SQL_str(title_id, lambda x: x[0])
	title = run_sql("SELECT value "
	"FROM bib24x "
	"WHERE id in %s "
	"AND tag = '245__a'"
	% title_id_s)

	if title:
	return title[0][0]

	def get_bib10x():
	return run_sql("select id, value from bib10x where tag like %s", ("100__a",))


	def get_bib70x():
	return run_sql("select id, value from bib70x where tag like %s", ("700__a",))


	class Bib_matrix(object):
	'''
	This small class contains the sparse matrix
	and encapsulates it.
	'''
	# please increment this value every time you
	# change the output of the comparison functions
	current_comparison_version = 10

	__special_items = ((None, -3.), ('+', -2.), ('-', -1.))
	special_symbols = dict((x[0], x[1]) for x in __special_items)
	special_numbers = dict((x[1], x[0]) for x in __special_items)

	def __init__(self, cluster_set=None):
	if cluster_set:
	self._bibmap = dict((b[1], b[0]) for b in enumerate(cluster_set.all_bibs()))
	width = len(self._bibmap)
	size = ((width - 1) * width) / 2
	self._matrix = Bib_matrix.create_empty_matrix(size)
	else:
	self._bibmap = dict()

	self.creation_time = get_sql_time()

	@staticmethod
	def create_empty_matrix(lenght):
	ret = numpy.ndarray(shape=(lenght, 2), dtype=float, order='C')
	ret.fill(Bib_matrix.special_symbols[None])
	return ret

	def _resolve_entry(self, bibs):
	assert len(bibs) == 2
	first = self._bibmap[bibs[0]]
	second = self._bibmap[bibs[1]]
	if first > second:
	first, second = second, first
	assert first < second
	return first + ((second - 1) * second) / 2

	def __setitem__(self, bibs, val):
	entry = self._resolve_entry(bibs)
	self._matrix[entry] = Bib_matrix.special_symbols.get(val, val)

	def __getitem__(self, bibs):
	entry = self._resolve_entry(bibs)
	ret = tuple(self._matrix[entry])
	return Bib_matrix.special_numbers.get(ret[0], ret)

	def __contains__(self, bib):
	return bib in self._bibmap

	def get_keys(self):
	return self._bibmap.keys()

	@staticmethod
	def get_file_dir(name):
	sub_dir = name[:2]
	if not sub_dir:
	sub_dir = "empty_last_name"
	return "%s%s/" % (bconfig.TORTOISE_FILES_PATH, sub_dir)

	@staticmethod
	def get_map_path(dir_path, name):
	return "%s%s.bibmap" % (dir_path, name)

	@staticmethod
	def get_matrix_path(dir_path, name):
	return "%s%s.npy" % (dir_path, name)

	def load(self, name, load_map=True, load_matrix=True):
	files_dir = Bib_matrix.get_file_dir(name)

	if not os.path.isdir(files_dir):
	self._bibmap = dict()
	return False

	try:
	if load_map:
	bibmap_v = cPickle.load(open(Bib_matrix.get_map_path(files_dir, name), 'r'))
	rec_v, self.creation_time, self._bibmap = bibmap_v
	if (rec_v != Bib_matrix.current_comparison_version or
	Bib_matrix.current_comparison_version < 0): # you can use negative
	# version to recalculate
	self._bibmap = dict()
	return False

	if load_matrix:
	self._matrix = numpy.load(Bib_matrix.get_matrix_path(files_dir, name))
	except (IOError, UnpicklingError):
	if load_map:
	self._bibmap = dict()
	self.creation_time = get_sql_time()
	return False
	return True

	def store(self, name):
	files_dir = Bib_matrix.get_file_dir(name)

	if not os.path.isdir(files_dir):
	try:
	os.mkdir(files_dir)
	except OSError, e:
	if e.errno == 17 or 'file exists' in str(e.strerror).lower():
	pass
	else:
	raise e

	bibmap_v = (Bib_matrix.current_comparison_version, self.creation_time, self._bibmap)
	cPickle.dump(bibmap_v, open(Bib_matrix.get_map_path(files_dir, name), 'w'))

	numpy.save(open(Bib_matrix.get_matrix_path(files_dir, name), "w"), self._matrix)

	def delete_paper_from_personid(rec):
	'''
	Deletes all information in PERSONID about a given paper
	'''
	run_sql("delete from aidPERSONIDPAPERS where bibrec = %s", (rec,))


	def get_signatures_from_rec(bibrec):
	'''
	Retrieves all information in PERSONID
	about a given bibrec.
	'''
	return run_sql("select personid, bibref_table, bibref_value, bibrec, name "
	"from aidPERSONIDPAPERS where bibrec = %s"
	, (bibrec,))


	def modify_signature(oldref, oldrec, newref, newname):
	'''
	Modifies a signature in aidPERSONIDpapers.
	'''
	return run_sql("UPDATE aidPERSONIDPAPERS "
	"SET bibref_table = %s, bibref_value = %s, name = %s "
	"WHERE bibref_table = %s AND bibref_value = %s AND bibrec = %s"
	, (str(newref[0]), newref[1], newname,
	str(oldref[0]), oldref[1], oldrec))


	def find_pids_by_name(name):
	'''
	Finds names and personids by a prefix name.
	'''
	return set(run_sql("SELECT personid, name "
	"FROM aidPERSONIDPAPERS "
	"WHERE name like %s"
	, (name + ',%',)))

	def find_pids_by_exact_name(name):
	"""
	Finds names and personids by a name.
	"""
	return set(run_sql("SELECT personid "
	"FROM aidPERSONIDPAPERS "
	"WHERE name = %s"
	, (name,)))

	def remove_sigs(signatures):
	'''
	Removes records from aidPERSONIDPAPERS
	'''
	for sig in signatures:
	run_sql("DELETE FROM aidPERSONIDPAPERS "
	"WHERE bibref_table like %s AND bibref_value = %s AND bibrec = %s"
	, (str(sig[0]), sig[1], sig[2]))


	def remove_personid_papers(pids):
	'''
	Removes all signatures from aidPERSONIDPAPERS with pid in pids
	'''
	if pids:
	run_sql("delete from aidPERSONIDPAPERS where personid in %s"
	% list_2_SQL_str(pids))


	def get_full_personid_papers(table_name="`aidPERSONIDPAPERS`"):
	'''
	Get all columns and rows from aidPERSONIDPAPERS
	or any other table with the same structure.
	'''
	return run_sql("select personid, bibref_table, "
	"bibref_value, bibrec, name, flag, "
	"lcul from %s" % table_name)


	def get_full_results():
	'''
	Depricated. Should be removed soon.
	'''
	return run_sql("select personid, bibref_table, bibref_value, bibrec "
	"from aidRESULTS")


	def get_lastname_results(last_name):
	'''
	Returns rows from aidRESULTS which share a common last name.
	'''
	return run_sql("select personid, bibref_table, bibref_value, bibrec "
	"from aidRESULTS "
	"where personid like '" + last_name + ".%'")


	def get_full_personid_data(table_name="`aidPERSONIDDATA`"):
	'''
	Get all columns and rows from aidPERSONIDDATA
	or any other table with the same structure.
	'''
	return run_sql("select personid, tag, data, "
	"opt1, opt2, opt3 from %s" % table_name)


	def get_specific_personid_full_data(pid):
	'''
	Get all columns and rows from aidPERSONIDDATA
	'''
	return run_sql("select personid, tag, data, "
	"opt1, opt2, opt3 from aidPERSONIDDATA where personid=%s "
	, (pid,))


	def get_canonical_names_by_pid(pid):
	'''
	Get all data that has as a tag canonical_name from aidPERSONIDDATA
	'''
	return run_sql("select data "
	"from aidPERSONIDDATA where personid=%s and tag=%s"
	, (pid, "canonical_name"))


	def get_orcids_by_pids(pid):
	'''
	Get all data that has as a tag extid:ORCID from aidPERSONIDDATA
	'''
	return run_sql("select data "
	"from aidPERSONIDDATA where personid=%s and tag=%s"
	, (pid, "extid:ORCID"))


	def get_inspire_ids_by_pids(pid):
	'''
	Get all data that has as a tag extid:INSPIREID from aidPERSONIDDATA
	'''
	return run_sql("select data "
	"from aidPERSONIDDATA where personid=%s and tag=%s"
	, (pid, "extid:INSPIREID"))

	def get_uids_by_pids(pid):
	'''
	Get all data that has as a tag uid from aidPERSONIDDATA
	'''
	return run_sql("select data "
	"from aidPERSONIDDATA where personid=%s and tag=%s"
	, (pid, "uid"))

	def get_name_string_to_pid_dictionary():
	'''
	Get a dictionary which maps name strigs to person ids
	'''
	namesdict = {}
	all_names = run_sql("select personid,name from aidPERSONIDPAPERS")
	for x in all_names:
	namesdict.setdefault(x[1], set()).add(x[0])
	return namesdict

	#could be useful to optimize rabbit, still unused and untested, watch out.
	def get_bibrecref_to_pid_dictuonary():
	brr2pid = {}
	all_brr = run_sql("select personid,bibref_table,bibref_value.bibrec from aidPERSONIDPAPERS")
	for x in all_brr:
	brr2pid.setdefault(tuple(x[1:]), set()).add(x[0])
	return brr2pid

	def check_personid_papers(output_file=None):
	'''
	Checks all invariants of personid.
	Writes in stdout if output_file if False.
	'''

	if output_file:
	fp = open(output_file, "w")
	printer = lambda x: fp.write(x + '\n')
	else:
	printer = bibauthor_print

	checkers = (
	check_wrong_names,
	check_duplicated_papers,
	check_duplicated_signatures,
	check_wrong_rejection,
	check_canonical_names,
	check_empty_personids
	#check_claim_inspireid_contradiction
	)
	# Avoid writing f(a) or g(a), because one of the calls
	# might be optimized.
	return all([check(printer) for check in checkers])

	def repair_personid(output_file=None):
	'''
	This should make check_personid_papers() to return true.
	'''
	if output_file:
	fp = open(output_file, "w")
	printer = lambda x: fp.write(x + '\n')
	else:
	printer = bibauthor_print

	checkers = (
	check_wrong_names,
	check_duplicated_papers,
	check_duplicated_signatures,
	check_wrong_rejection,
	check_canonical_names,
	check_empty_personids
	#check_claim_inspireid_contradiction
	)

	first_check = [check(printer) for check in checkers]
	repair_pass = [check(printer, repair=True) for check in checkers]
	last_check = [check(printer) for check in checkers]

	if not all(first_check):
	assert not(all(repair_pass))
	assert all(last_check)

	return all(last_check)

	def check_duplicated_papers(printer, repair=False):
	all_ok = True
	bibrecs_to_reassign = []

	recs = run_sql("select personid,bibrec from aidPERSONIDPAPERS where flag <> %s", (-2,))
	d = {}

	for x, y in recs:
	d.setdefault(x, []).append(y)

	for pid , bibrec in d.iteritems():
	if not len(bibrec) == len(set(bibrec)):
	all_ok = False
	dups = sorted(bibrec)
	dups = [x for i, x in enumerate(dups[0:len(dups) - 1]) if x == dups[i + 1]]
	printer("Person %d has duplicated papers: %s" % (pid, dups))

	if repair:
	for dupbibrec in dups:
	printer("Repairing duplicated bibrec %s" % str(dupbibrec))
	involved_claimed = run_sql("select personid,bibref_table,bibref_value,bibrec,flag "
	"from aidPERSONIDPAPERS where personid=%s and bibrec=%s "
	"and flag >= 2", (pid, dupbibrec))

	if len(involved_claimed) != 1:
	bibrecs_to_reassign.append(dupbibrec)
	run_sql("delete from aidPERSONIDPAPERS where personid=%s and bibrec=%s", (pid, dupbibrec))
	else:
	involved_not_claimed = run_sql("select personid,bibref_table,bibref_value,bibrec,flag "
	"from aidPERSONIDPAPERS where personid=%s and bibrec=%s "
	"and flag < 2", (pid, dupbibrec))
	for v in involved_not_claimed:
	run_sql("delete from aidPERSONIDPAPERS where personid=%s and bibref_table=%s "
	"and bibref_value=%s and bibrec=%s and flag=%s", (v))

	if repair and bibrecs_to_reassign:
	printer("Reassigning deleted bibrecs %s" % str(bibrecs_to_reassign))
	from invenio.bibauthorid_rabbit import rabbit
	rabbit(bibrecs_to_reassign)

	return all_ok


	def check_duplicated_signatures(printer, repair=False):
	all_ok = True

	brr = run_sql("select bibref_table, bibref_value, bibrec from aidPERSONIDPAPERS where flag > %s", ("-2",))

	bibrecs_to_reassign = []

	d = {}
	for x, y, z in brr:
	d.setdefault(z, []).append((x, y))

	for bibrec, bibrefs in d.iteritems():
	if not len(bibrefs) == len(set(bibrefs)):
	all_ok = False
	dups = sorted(bibrefs)
	dups = [x for i, x in enumerate(dups[0:len(dups) - 1]) if x == dups[i + 1]]
	printer("Paper %d has duplicated signatures: %s" % (bibrec, dups))

	if repair:
	for dup in set(dups):
	printer("Repairing duplicate %s" % str(dup))
	claimed = run_sql("select personid,bibref_table,bibref_value,bibrec from "
	"aidPERSONIDPAPERS where bibref_table=%s and bibref_value=%s "
	"and bibrec=%s and flag=2", (dup[0], dup[1], bibrec))
	if len(claimed) != 1:
	bibrecs_to_reassign.append(bibrec)
	run_sql("delete from aidPERSONIDPAPERS where bibref_table=%s and "
	"bibref_value = %s and bibrec = %s", (dup[0], dup[1], bibrec))
	else:
	run_sql("delete from aidPERSONIDPAPERS where bibref_table=%s and bibref_value=%s "
	"and bibrec=%s and flag<2", (dup[0], dup[1], bibrec))

	if repair and bibrecs_to_reassign:
	printer("Reassigning deleted duplicates %s" % str(bibrecs_to_reassign))
	from invenio.bibauthorid_rabbit import rabbit
	rabbit(bibrecs_to_reassign)
	return all_ok


	def get_wrong_names():
	'''
	Returns a generator with all wrong names in aidPERSONIDPAPERS.
	Every element is (table, ref, correct_name).
	'''

	bib100 = dict(((x[0], create_normalized_name(split_name_parts(x[1]))) for x in get_bib10x()))
	bib700 = dict(((x[0], create_normalized_name(split_name_parts(x[1]))) for x in get_bib70x()))

	pidnames100 = set(run_sql("select bibref_value, name from aidPERSONIDPAPERS "
	" where bibref_table='100'"))
	pidnames700 = set(run_sql("select bibref_value, name from aidPERSONIDPAPERS "
	" where bibref_table='700'"))

	wrong100 = set(('100', x[0], bib100.get(x[0], None)) for x in pidnames100 if x[1] != bib100.get(x[0], None))
	wrong700 = set(('700', x[0], bib700.get(x[0], None)) for x in pidnames700 if x[1] != bib700.get(x[0], None))

	total = len(wrong100) + len(wrong700)

	return chain(wrong100, wrong700), total

	def check_wrong_names(printer, repair=False):
	ret = True
	wrong_names, number = get_wrong_names()

	if number > 0:
	ret = False
	printer("%d corrupted names in aidPERSONIDPAPERS." % number)
	for wrong_name in wrong_names:
	if wrong_name[2]:
	printer("Outdated name, '%s'(%s:%d)." % (wrong_name[2], wrong_name[0], wrong_name[1]))
	else:
	printer("Invalid id(%s:%d)." % (wrong_name[0], wrong_name[1]))

	if repair:
	printer("Fixing wrong name: %s" % str(wrong_name))
	if wrong_name[2]:
	run_sql("update aidPERSONIDPAPERS set name=%s where bibref_table=%s and bibref_value=%s",
	(wrong_name[2], wrong_name[0], wrong_name[1]))
	else:
	run_sql("delete from aidPERSONIDPAPERS where bibref_table=%s and bibref_value=%s",
	(wrong_name[0], wrong_name[1]))
	return ret

	def check_canonical_names(printer, repair=False):
	ret = True

	pid_cn = run_sql("select personid, data from aidPERSONIDDATA where tag = %s", ('canonical_name',))
	pid_2_cn = dict((k, len(list(d))) for k, d in groupby(sorted(pid_cn, key=itemgetter(0)), key=itemgetter(0)))

	pid_to_repair = []

	for pid in get_existing_personids():
	canon = pid_2_cn.get(pid, 0)

	if canon != 1:
	if canon == 0:
	papers = run_sql("select count(*) from aidPERSONIDPAPERS where personid = %s", (pid,))[0][0]
	if papers != 0:
	printer("Personid %d does not have a canonical name, but have %d papers." % (pid, papers))
	ret = False
	pid_to_repair.append(pid)
	else:
	printer("Personid %d has %d canonical names.", (pid, canon))
	pid_to_repair.append(pid)
	ret = False

	if repair and not ret:
	printer("Repairing canonical names for pids: %s" % str(pid_to_repair))
	update_personID_canonical_names(pid_to_repair, overwrite=True)
	return ret


	def check_empty_personids(printer, repair=False):
	ret = True

	paper_pids = set(p[0] for p in run_sql("select personid from aidPERSONIDPAPERS"))
	data_pids = set(p[0] for p in run_sql("select personid from aidPERSONIDDATA"))

	for p in data_pids - paper_pids:
	fields = run_sql("select count(*) from aidPERSONIDDATA where personid = %s and tag <> %s", (p, "canonical_name",))[0][0]

	if fields == 0:
	printer("Personid %d has no papers and nothing else than canonical_name." % p)
	if repair:
	printer("Deleting empty person %s" % str(p))
	run_sql("delete from aidPERSONIDDATA where personid=%s", (p,))
	ret = False

	return ret


	def check_wrong_rejection(printer, repair=False):
	all_ok = True

	to_reassign = []
	to_deal_with = []

	all_rejections = set(run_sql("select bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS "
	"where flag = %s",
	('-2',)))
	all_confirmed = set(run_sql("select bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS "
	"where flag > %s",
	('-2',)))

	not_assigned = all_rejections - all_confirmed

	if not_assigned:
	all_ok = False
	for s in not_assigned:
	printer('Paper (%s:%s,%s) was rejected but never reassigned' % s)
	to_reassign.append(s)


	all_rejections = set(run_sql("select personid, bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS "
	"where flag = %s",
	('-2',)))
	all_confirmed = set(run_sql("select personid, bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS "
	"where flag > %s",
	('-2',)))

	both_confirmed_and_rejected = all_rejections & all_confirmed

	if both_confirmed_and_rejected:
	all_ok = False
	for i in both_confirmed_and_rejected:
	printer("Conflicting assignment/rejection: %s" % str(i))
	to_deal_with.append(i)

	if repair and (to_reassign or to_deal_with):

	from invenio.bibauthorid_rabbit import rabbit

	if to_reassign:
	#Rabbit is not designed to reassign signatures which are rejected but not assigned:
	#All signatures should stay assigned, if a rejection occours the signature should get
	#moved to a new place and the rejection entry added, but never exist as a rejection only.
	#Hence, to force rabbit to reassign it, we have to delete the rejection.
	printer("Reassigning bibrecs with missing entries: %s" % str(to_reassign))
	for sig in to_reassign:
	run_sql("delete from aidPERSONIDPAPERS where bibref_table=%s and "
	"bibref_value=%s and bibrec = %s and flag=-2", (sig))
	rabbit([s[2] for s in to_reassign])

	if to_deal_with:
	#We got claims and rejections on the same person for the same paper. Let's forget about
	#it and reassign it automatically, they'll make up their minds sooner or later.
	printer("Deleting and reassigning bibrefrecs with conflicts %s" % str(to_deal_with))
	for sig in to_deal_with:
	run_sql("delete from aidPERSONIDPAPERS where personid=%s and bibref_table=%s and "
	"bibref_value=%s and bibrec = %s", (sig))
	rabbit(map(itemgetter(3), to_deal_with))

	return all_ok


	def check_merger():
	'''
	This function presumes that copy_personid was
	called before the merger.
	'''
	is_ok = True

	old_claims = set(run_sql("select personid, bibref_table, bibref_value, bibrec, flag "
	"from aidPERSONIDPAPERS_copy "
	"where flag = -2 or flag = 2"))

	cur_claims = set(run_sql("select personid, bibref_table, bibref_value, bibrec, flag "
	"from aidPERSONIDPAPERS "
	"where flag = -2 or flag = 2"))

	errors = ((old_claims - cur_claims, "Some claims were lost during the merge."),
	(cur_claims - old_claims, "Some new claims appeared after the merge."))
	act = { -2 : 'Rejection', 2 : 'Claim' }

	for err_set, err_msg in errors:
	if err_set:
	is_ok = False
	bibauthor_print(err_msg)
	bibauthor_print("".join(" %s: personid %d %d:%d,%d\n" %
	(act[cl[4]], cl[0], int(cl[1]), cl[2], cl[3]) for cl in err_set))

	old_assigned = set(run_sql("select bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS_copy"))
	#"where flag <> -2 and flag <> 2"))

	cur_assigned = set(run_sql("select bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS"))
	#"where flag <> -2 and flag <> 2"))

	errors = ((old_assigned - cur_assigned, "Some signatures were lost during the merge."),
	(cur_assigned - old_assigned, "Some new signatures appeared after the merge."))

	for err_sig, err_msg in errors:
	if err_sig:
	is_ok = False
	bibauthor_print(err_msg)
	bibauthor_print("".join(" %s:%d,%d\n" % sig for sig in err_sig))

	return is_ok

	def check_results():
	is_ok = True

	all_result_rows = run_sql("select personid,bibref_table,bibref_value,bibrec from aidRESULTS")

	keyfunc = lambda x: x[1:]
	duplicated = (d for d in (list(d) for k, d in groupby(sorted(all_result_rows, key=keyfunc), key=keyfunc)) if len(d) > 1)

	for dd in duplicated:
	is_ok = False
	for d in dd:
	print "Duplicated row in aidRESULTS"
	print "%s %s %s %s" % d
	print


	clusters = {}
	for rr in all_result_rows:
	clusters[rr[0]] = clusters.get(rr[0], []) + [rr[3]]

	faulty_clusters = dict((cid, len(recs) - len(set(recs)))
	for cid, recs in clusters.items()
	if not len(recs) == len(set(recs)))

	if faulty_clusters:
	is_ok = False
	print "Recids NOT unique in clusters!"
	print ("A total of %s clusters hold an average of %.2f duplicates" %
	(len(faulty_clusters), (sum(faulty_clusters.values()) / float(len(faulty_clusters)))))

	for c in faulty_clusters:
	print "Name: %-20s Size: %4d Faulty: %2d" % (c, len(clusters[c]), faulty_clusters[c])

	return is_ok

	def check_claim_inspireid_contradiction():
	iids10x = run_sql("select id from bib10x where tag = '100__i'")
	iids70x = run_sql("select id from bib70x where tag = '700__i'")

	refs10x = set(x[0] for x in run_sql("select id from bib10x where tag = '100__a'"))
	refs70x = set(x[0] for x in run_sql("select id from bib70x where tag = '700__a'"))

	if iids10x:
	iids10x = list_2_SQL_str(iids10x, lambda x: str(x[0]))

	iids10x = run_sql("select id_bibxxx, id_bibrec, field_number "
	"from bibrec_bib10x "
	"where id_bibxxx in %s"
	% iids10x)

	iids10x = ((row[0], [(ref, rec) for ref, rec in run_sql(
	"select id_bibxxx, id_bibrec "
	"from bibrec_bib10x "
	"where id_bibrec = '%s' "
	"and field_number = '%s'"
	% row[1:])
	if ref in refs10x])
	for row in iids10x)
	else:
	iids10x = ()

	if iids70x:
	iids70x = list_2_SQL_str(iids70x, lambda x: str(x[0]))

	iids70x = run_sql("select id_bibxxx, id_bibrec, field_number "
	"from bibrec_bib70x "
	"where id_bibxxx in %s"
	% iids70x)

	iids70x = ((row[0], [(ref, rec) for ref, rec in run_sql(
	"select id_bibxxx, id_bibrec "
	"from bibrec_bib70x "
	"where id_bibrec = '%s' "
	"and field_number = '%s'"
	% (row[1:]))
	if ref in refs70x])
	for row in iids70x)
	else:
	iids70x = ()

	# [(iids, [bibs])]
	inspired = list(chain(((iid, list(set(('100',) + bib for bib in bibs))) for iid, bibs in iids10x),
	((iid, list(set(('700',) + bib for bib in bibs))) for iid, bibs in iids70x)))

	assert all(len(x[1]) == 1 for x in inspired)

	inspired = ((k, map(itemgetter(0), map(itemgetter(1), d)))
	for k, d in groupby(sorted(inspired, key=itemgetter(0)), key=itemgetter(0)))

	# [(inspireid, [bibs])]
	inspired = [([(run_sql("select personid "
	"from aidPERSONIDPAPERS "
	"where bibref_table = %s "
	"and bibref_value = %s "
	"and bibrec = %s "
	"and flag = '2'"
	, bib), bib)
	for bib in cluster[1]], cluster[0])
	for cluster in inspired]

	# [([([pid], bibs)], inspireid)]
	for cluster, iid in inspired:
	pids = set(chain.from_iterable(imap(itemgetter(0), cluster)))

	if len(pids) > 1:
	print "InspireID: %s links the following papers:" % iid
	print map(itemgetter(1), cluster)
	print "More than one personid claimed them:"
	print list(pids)
	print
	continue

	if len(pids) == 0:
	# not even one paper with this inspireid has been
	# claimed, screw it
	continue

	pid = list(pids)[0][0]

	# The last step is to check all non-claimed papers for being
	# claimed by the person on some different signature.
	problem = (run_sql("select bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS "
	"where bibrec = %s "
	"and personid = %s "
	"and flag = %s"
	, (bib[2], pid, 2))
	for bib in (bib for lpid, bib in cluster if not lpid))
	problem = list(chain.from_iterable(problem))

	if problem:
	print "A personid has claimed a paper from an inspireid cluster and a contradictory paper."
	print "Personid %d" % pid
	print "Inspireid cluster %s" % str(map(itemgetter(1), cluster))
	print "Contradicting claims: %s" % str(problem)
	print

	def get_all_bibrecs():
	'''
	Get all record ids present in aidPERSONIDPAPERS
	'''
	return set([x[0] for x in run_sql("select bibrec from aidPERSONIDPAPERS")])

	def get_bibrefrec_to_pid_flag_mapping():
	'''
	create a map between signatures and personid/flag
	'''
	whole_table = run_sql("select bibref_table,bibref_value,bibrec,personid,flag from aidPERSONIDPAPERS")
	gc.disable()
	ret = {}
	for x in whole_table:
	sig = (x[0], x[1], x[2])
	pid_flag = (x[3], x[4])
	ret[sig] = ret.get(sig , []) + [pid_flag]
	gc.collect()
	gc.enable()
	return ret

	def remove_all_bibrecs(bibrecs):
	'''
	Remove give record ids from aidPERSONIDPAPERS table
	@param bibrecs:
	@type bibrecs:
	'''
	bibrecs_s = list_2_SQL_str(bibrecs)
	run_sql("delete from aidPERSONIDPAPERS where bibrec in %s" % bibrecs_s)


	def empty_results_table():
	'''
	Get rid of all tortoise results
	'''
	run_sql("TRUNCATE aidRESULTS")


	def save_cluster(named_cluster):
	'''
	Save a cluster in aidRESULTS
	@param named_cluster:
	@type named_cluster:
	'''
	name, cluster = named_cluster
	for bib in cluster.bibs:
	run_sql("INSERT INTO aidRESULTS "
	"(personid, bibref_table, bibref_value, bibrec) "
	"VALUES (%s, %s, %s, %s) "
	, (name, str(bib[0]), bib[1], bib[2]))


	def remove_result_cluster(name):
	'''
	Remove result cluster using name string
	@param name:
	@type name:
	'''
	run_sql("DELETE FROM aidRESULTS "
	"WHERE personid like '%s.%%'"
	% name)


	def personid_name_from_signature(sig):
	'''
	Find personid and name string of a signature
	@param sig:
	@type sig:
	'''
	ret = run_sql("select personid, name "
	"from aidPERSONIDPAPERS "
	"where bibref_table = %s and bibref_value = %s and bibrec = %s "
	"and flag > '-2'"
	, sig)
	assert len(ret) < 2, ret
	return ret

	def personid_from_signature(sig):
	'''
	Find personid owner of a signature
	@param sig:
	@type sig:
	'''
	ret = run_sql("select personid, flag "
	"from aidPERSONIDPAPERS "
	"where bibref_table = %s and bibref_value = %s and bibrec = %s "
	"and flag > '-2'"
	, sig)
	assert len(ret) < 2, ret
	return ret

	def get_signature_info(sig):
	'''
	Get personid and flag relative to a signature
	@param sig:
	@type sig:
	'''
	ret = run_sql("select personid, flag "
	"from aidPERSONIDPAPERS "
	"where bibref_table = %s and bibref_value = %s and bibrec = %s "
	"order by flag"
	, sig)
	return ret

	def get_claimed_papers(pid):
	'''
	Find all papers which have been manually claimed
	@param pid:
	@type pid:
	'''
	return run_sql("select bibref_table, bibref_value, bibrec "
	"from aidPERSONIDPAPERS "
	"where personid = %s "
	"and flag > %s",
	(pid, 1))


	def copy_personids():
	'''
	Make a copy of aidPERSONID tables to aidPERSONID*_copy tables for later comparison/restore
	'''
	run_sql("DROP TABLE IF EXISTS `aidPERSONIDDATA_copy`")
	run_sql("CREATE TABLE `aidPERSONIDDATA_copy` ( "
	"`personid` BIGINT( 8 ) UNSIGNED NOT NULL , "
	"`tag` VARCHAR( 64 ) NOT NULL , "
	"`data` VARCHAR( 256 ) NOT NULL , "
	"`opt1` MEDIUMINT( 8 ) DEFAULT NULL , "
	"`opt2` MEDIUMINT( 8 ) DEFAULT NULL , "
	"`opt3` VARCHAR( 256 ) DEFAULT NULL , "
	"KEY `personid-b` ( `personid` ) , "
	"KEY `tag-b` ( `tag` ) , "
	"KEY `data-b` ( `data` ) , "
	"KEY `opt1` ( `opt1` ) "
	") ENGINE = MYISAM DEFAULT CHARSET = utf8")
	run_sql("INSERT INTO `aidPERSONIDDATA_copy` "
	"SELECT * "
	"FROM `aidPERSONIDDATA`")

	run_sql("DROP TABLE IF EXISTS `aidPERSONIDPAPERS_copy`")
	run_sql("CREATE TABLE `aidPERSONIDPAPERS_copy` ( "
	"`personid` bigint( 8 ) unsigned NOT NULL , "
	"`bibref_table` enum( '100', '700' ) NOT NULL , "
	"`bibref_value` mediumint( 8 ) unsigned NOT NULL , "
	"`bibrec` mediumint( 8 ) unsigned NOT NULL , "
	"`name` varchar( 256 ) NOT NULL , "
	"`flag` smallint( 2 ) NOT NULL DEFAULT '0', "
	"`lcul` smallint( 2 ) NOT NULL DEFAULT '0', "
	"`last_updated` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP , "
	"KEY `personid-b` ( `personid` ) , "
	"KEY `reftable-b` ( `bibref_table` ) , "
	"KEY `refvalue-b` ( `bibref_value` ) , "
	"KEY `rec-b` ( `bibrec` ) , "
	"KEY `name-b` ( `name` ) , "
	"KEY `timestamp-b` ( `last_updated` ) , "
	"KEY `ptvrf-b` ( `personid` , `bibref_table` , `bibref_value` , `bibrec` , `flag` ) "
	") ENGINE = MyISAM DEFAULT CHARSET = utf8")
	run_sql("INSERT INTO `aidPERSONIDPAPERS_copy` "
	"SELECT * "
	"FROM `aidPERSONIDPAPERS")

	def delete_empty_persons():
	'''
	find and eliminate empty persons (not holding papers nor any other information that canonical_name
	'''
	pp = run_sql("select personid from aidPERSONIDPAPERS")
	pp = set(p[0] for p in pp)
	pd = run_sql("select personid from aidPERSONIDDATA")
	pd = set(p[0] for p in pd)
	fpd = run_sql("select personid from aidPERSONIDDATA where tag <> 'canonical_name'")
	fpd = set(p[0] for p in fpd)
	to_delete = pd - (pp \| fpd)
	if to_delete:
	run_sql("delete from aidPERSONIDDATA where personid in %s" % list_2_SQL_str(to_delete))


	def restore_personids():
	'''
	Restore personid tables from last copy saved with copy_personids
	'''
	run_sql("TRUNCATE `aidPERSONIDDATA`")
	run_sql("INSERT INTO `aidPERSONIDDATA` "
	"SELECT * "
	"FROM `aidPERSONIDDATA_copy`")

	run_sql("TRUNCATE `aidPERSONIDPAPERS`")
	run_sql("INSERT INTO `aidPERSONIDPAPERS` "
	"SELECT * "
	"FROM `aidPERSONIDPAPERS_copy")

	def resolve_affiliation(ambiguous_aff_string):
	"""
	This is a method available in the context of author disambiguation in ADS
	only. No other platform provides the db table used by this function.
	@warning: to be used in an ADS context only.
	@param ambiguous_aff_string: Ambiguous affiliation string
	@type ambiguous_aff_string: str
	@return: The normalized version of the name string as presented in the database
	@rtype: str
	"""
	if not ambiguous_aff_string or not bconfig.CFG_ADS_SITE:
	return "None"

	aff_id = run_sql("select aff_id from ads_affiliations where affstring=%s", (ambiguous_aff_string,))

	if aff_id:
	return aff_id[0][0]
	else:
	return "None"

	def get_free_pids():
	'''
	Returns an iterator with all free personids.
	It's cool, because it fills holes.
	'''
	all_pids = frozenset(x[0] for x in chain(
	run_sql("select personid from aidPERSONIDPAPERS") ,
	run_sql("select personid from aidPERSONIDDATA")))
	return ifilter(lambda x: x not in all_pids, count())


	def remove_results_outside(many_names):
	'''
	Delete results from aidRESULTS not including many_names
	@param many_names:
	@type many_names:
	'''
	many_names = frozenset(many_names)
	res_names = frozenset(x[0].split(".")[0] for x in run_sql("select personid from aidRESULTS"))

	for name in res_names - many_names:
	run_sql("delete from aidRESULTS where personid like '%s.%%'" % name)


	def get_signatures_from_bibrefs(bibrefs):
	'''
	@param bibrefs:
	@type bibrefs:
	'''
	bib10x = ifilter(lambda x: x[0] == 100, bibrefs)
	bib10x_s = list_2_SQL_str(bib10x, lambda x: x[1])
	bib70x = ifilter(lambda x: x[0] == 700, bibrefs)
	bib70x_s = list_2_SQL_str(bib70x, lambda x: x[1])
	valid_recs = set(get_all_valid_bibrecs())

	if bib10x_s != '()':
	sig10x = run_sql("select 100, id_bibxxx, id_bibrec "
	"from bibrec_bib10x "
	"where id_bibxxx in %s"
	% (bib10x_s,))
	else:
	sig10x = ()

	if bib70x_s != '()':
	sig70x = run_sql("select 700, id_bibxxx, id_bibrec "
	"from bibrec_bib70x "
	"where id_bibxxx in %s"
	% (bib70x_s,))
	else:
	sig70x = ()

	return ifilter(lambda x: x[2] in valid_recs, chain(set(sig10x), set(sig70x)))


	def get_all_valid_bibrecs():
	'''
	Returns a list of valid record ids
	'''
	collection_restriction_pattern = " or ".join(["980__a:\"%s\"" % x for x in bconfig.LIMIT_TO_COLLECTIONS])
	return perform_request_search(p="%s" % collection_restriction_pattern, rg=0)


	def get_coauthor_pids(pid, exclude_bibrecs=None):
	'''
	Find personids sharing bibrecs with given pid, eventually excluding a given set of common bibrecs.
	@param pid:
	@type pid:
	@param exclude_bibrecs:
	@type exclude_bibrecs:
	'''
	papers = get_person_bibrecs(pid)
	if exclude_bibrecs:
	papers = set(papers) - set(exclude_bibrecs)

	if not papers:
	return []

	papers_s = list_2_SQL_str(papers)

	pids = run_sql("select personid,bibrec from aidPERSONIDPAPERS "
	"where bibrec in %s and flag > -2" % papers_s)


	pids = set((int(p[0]), int(p[1])) for p in pids)
	pids = sorted([p[0] for p in pids])
	pids = groupby(pids)
	pids = [(key, len(list(val))) for key, val in pids if key != pid]
	pids = sorted(pids, key=lambda x: x[1], reverse=True)

	return pids

	def get_doi_from_rec(recid):
	"""
	Returns the doi of the paper like str if found.
	Otherwise returns None.
	0247 $2 DOI $a id
	"""
	idx = run_sql("SELECT id_bibxxx, field_number FROM bibrec_bib02x WHERE id_bibrec = %s", (recid,))
	if idx:
	doi_id_s = list_2_SQL_str(idx, lambda x: x[0])
	doi = run_sql("SELECT id, tag, value FROM bib02x WHERE id in %s " % doi_id_s)
	if doi:
	grouped = groupby(idx, lambda x: x[1])
	doi_dict = dict((x[0],x[1:]) for x in doi)
	for group in grouped:
	elms = [x[0] for x in list(group[1])]
	found = False
	code = None
	for el in elms:
	if doi_dict[el][0] == '0247_2' and doi_dict[el][1] == 'DOI':
	found = True
	elif doi_dict[el][0] == '0247_a':
	code = doi_dict[el][1]
	if found and code:
	return code
	return None

	def export_person(person_id):
	'''list of records table: personidpapers and personiddate check existing function for getting the records!!!
	exports a structure of dictunaries of tuples of [...] if strings, like:

	{'name':('namestring',),
	'repeatable_field':({'field1':('val1',)},{'field1':'val2'})}
	'''

	person_info = defaultdict(defaultdict)

	full_names = get_person_db_names_set(person_id)
	if full_names:
	splitted_names = [split_name_parts(n[0]) for n in full_names]
	splitted_names = [x+[len(x[2])] for x in splitted_names]
	max_first_names = max([x[4] for x in splitted_names])
	full_name_candidates = filter(lambda x: x[4] == max_first_names, splitted_names)
	full_name = create_normalized_name(full_name_candidates[0])


	person_info['names']['full_name'] = (full_name,)
	person_info['names']['surname'] = (full_name_candidates[0][0],)
	if full_name_candidates[0][2]:
	person_info['names']['first_names'] = (' '.join(full_name_candidates[0][2]),)
	person_info['names']['name_variants'] = ('; '.join([create_normalized_name(x) for x in splitted_names]),)

	bibrecs = get_person_bibrecs(person_id)

	recids_data = []
	for recid in bibrecs:
	recid_dict = defaultdict(defaultdict)
	recid_dict['INSPIRE-record-id'] = (str(recid),)
	recid_dict['INSPIRE-record-url'] = ('%s/record/%s' % (CFG_SITE_URL, str(recid)),)
	rec_doi = get_doi_from_rec(recid)
	if rec_doi:
	recid_dict['DOI']= (str(rec_doi),)
	recids_data.append(recid_dict)

	person_info['records']['record'] = tuple(recids_data)


	person_info['identifiers']['INSPIRE_person_ID'] = (str(person_id),)


	canonical_names = get_canonical_names_by_pid(person_id)
	if canonical_names:
	person_info['identifiers']['INSPIRE_canonical_name'] = (str(canonical_names[0][0]),)
	person_info['profile_page']['INSPIRE_profile_page'] = ('%s/author/%s' % (CFG_SITE_URL,canonical_names[0][0]),)
	else:
	person_info['profile_page']['INSPIRE_profile_page'] = ('%s/author/%s' % (CFG_SITE_URL,str(person_id)),)

	orcids = get_orcids_by_pids(person_id)
	if orcids:
	person_info['identifiers']['ORCID'] = tuple(str(x[0]) for x in orcids)


	inspire_ids = get_inspire_ids_by_pids(person_id)
	if inspire_ids:
	person_info['identifiers']['INSPIREID'] = tuple(str(x[0]) for x in inspire_ids)


	return person_info


	def export_person_to_foaf(person_id):
	'''
	Exports to foaf xml a dictionary of dictionaries or tuples of strings as retured by export_person
	'''

	infodict = export_person(person_id)

	def export(val, indent=0):
	if isinstance(val, dict):
	contents = list()
	for k,v in val.iteritems():
	if isinstance(v,tuple):
	contents.append( ''.join( [ X[str(k)](indent=indent, body=export(c)) for c in v] ))
	else:
	contents.append( X[str(k)](indent=indent,body=export(v, indent=indent+1)) )
	return ''.join(contents)
	elif isinstance(val, str):
	return str(X.escaper(val))
	else:
	raise Exception('WHAT THE HELL DID WE GET HERE? %s' % str(val) )

	return X['person'](body=export(infodict, indent=1))

dbinterface.pyNo OneTemporaryActions

File Metadata

dbinterface.pyView Options

Event Timeline

dbinterface.py
No OneTemporary
Actions

dbinterface.py
View Options