R3744/scenario_treatFg.R
76bc7dbf8fd7HCV_reinfection

scenario_treatFg.R
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			#########treatment uptake
			# In this scenario individuals will be treated if they are in 2014 or more, and they have fibrosis F2 or more,
			# also if they have fibrosis less than F2, they will be treated if they are in 2018 or more.
			treat.fun <- function(bl, history)
			{
			source("index_block_fs_stage.r")
			lr = 0
			index = stage_identifier(lr , bl, history)
			index_fs = index[2]
			state = index[3]

			if (is.element(state, c(31:36)) )
			index_fs = 6 # DC

			if (is.element(state, c(37:42)) )
			index_fs = 7 # HCC

			if (is.element(state, c(43:48)) )
			index_fs = 8 #LT
			#############################################
			Year_infection = bl[ "BirthYear"] + bl["Age"]
			epsi = runif(1, 0, 1)
			res <- ifelse(index_fs >= 3, (2014 - (sum(history) + Year_infection)),
			(2018 - (sum(history) + Year_infection))) # treat in F2 or above
			res <- max(0, res) + epsi
			return(res)
			}