Homec4science
Diffusion LocalizeJ (master)

Edit
LocalizeJ
  • Restricted Project
InactivePublic

Branch: master
Actions
Clone

LOCALIZEJ

A. Seitz, O. Burri, R. Guiet

ImageJ plugin for the Simulation of localization-based nanoscopy

DESCRIPTION

Within the last decade various approaches have been established for probing biological structures at the nanoscale level. Precise localization of individual fluorophores is one promising approach in order to achieve high spatial resolution. We present an ImageJ plugin which allows the efficient numerical simulation of temporal image stacks resulting from blinking fluorophores seen in a classical diffraction limited imaging setup. Due to its openness and modularity the plugin can be easily modified and extended. In addition it is well suited to serve as didactical tool in multi user facilities helping to introduce and promote localization based super-resolution nanoscopy.

LocalizeJ (master)

.gitignore
README.md
pom.xml
src/

Recent Commits

CommitAuthorDetailsCommitted
73e661e724dcoburri
Forked from minimal-ij, edited pom and added dependencies 
Jun 24 2016
c366f1d545e5oburri
Modified to make it generic again 
Apr 29 2016
ddb4bc29ac3cromainGuiet
add more comments 
Apr 28 2016
4df1c6950f9dromainGuiet
prefix and suffix(es), roiNbr start at 1 (not 0) 
Apr 27 2016
4297c0d9fbearomainGuiet
if diameter is NaN make a point (instead of nothing) 
Apr 27 2016
4b34dfe98ba9romainGuiet
no more 2 images required. The active image should be the one that contains… 
Apr 27 2016
50aa878280d4romainGuiet
add some comments 
Apr 27 2016
1f5eb892d696romainGuiet
Now the plugin is macro recordable, the ROIs can have names defined by a string… 
Apr 27 2016
f8d4f2365085romainGuiet
BIOP menu and little stuff 
Apr 26 2016
a23c95ab7a7aromainGuiet
Initial commit of Parallel_Roi_Creator. 
Apr 26 2016
c991ec5509f6romainGuiet
Modify the plugin name (src...) and the pom 
Apr 26 2016
d2a130c7f50fCurtis Rueden
Merge pull request #5 from Dokthar/substring-patch 
Apr 12 2016
10cfab2117aeJules Maselbas
make substring args less confusing 
Apr 12 2016
7405f20cafe6Mark Hiner
Clarify underscore in artifactId 
Apr 7 2016
780286866ee6Kota Miura
Merge pull request #4 from lacan/patch-1 
Nov 26 2015

README.md

#LOCALIZEJ

A. Seitz, O. Burri, R. Guiet

ImageJ plugin for the Simulation of localization-based nanoscopy

DESCRIPTION

Within the last decade various approaches have been established for probing biological structures at the nanoscale level. Precise localization of individual fluorophores is one promising approach in order to achieve high spatial resolution. We present an ImageJ plugin which allows the efficient numerical simulation of temporal image stacks resulting from blinking fluorophores seen in a classical diffraction limited imaging setup. Due to its openness and modularity the plugin can be easily modified and extended. In addition it is well suited to serve as didactical tool in multi user facilities helping to introduce and promote localization based super-resolution nanoscopy.

c4science · Help