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R4670/PySONIC/core/lookup.py
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lookup.py
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# -*- coding: utf-8 -*-
# @Author: Theo Lemaire
# @Email: theo.lemaire@epfl.ch
# @Date: 2019-06-27 13:59:02
# @Last Modified by: Theo Lemaire
# @Last Modified time: 2019-06-27 14:22:05
import re
import numpy as np
from scipy.interpolate import interp1d
from ..utils import isWithin, isIterable
class Lookup:
''' Lookup object. '''
def __init__(self, refs, tables):
self.refs = refs
self.tables = SmartDict(tables)
for k, v in self.items():
if v.shape != self.dims():
raise ValueError('{} Table dimensions {} does not match references {}'.format(
k, v.shape, self.dims()))
def __repr__(self):
return 'Lookup{}D({})'.format(self.ndims(), ', '.join(self.inputs()))
def __getitem__(self, key):
return self.tables[key]
def __delitem__(self, key):
del self.tables[key]
def __setitem__(self, key, value):
self.tables[key] = value
def keys(self):
return self.tables.keys()
def values(self):
return self.tables.values()
def items(self):
return self.tables.items()
def refitems(self):
return self.refs.items()
def pop(self, key):
x = self.tables[key]
del self.tables[key]
return x
def rename(self, key1, key2):
self.tables[key2] = self.tables.pop(key1)
def dims(self):
return tuple([x.size for x in self.refs.values()])
def ndims(self):
return len(self.refs)
def inputs(self):
return list(self.refs.keys())
def outputs(self):
return list(self.keys())
def squeeze(self):
new_tables = {k: v.squeeze() for k, v in self.items()}
new_refs = {}
for k, v in self.refitems():
if v.size > 1:
new_refs[k] = v
return self.__class__(new_refs, new_tables)
def getAxisIndex(self, key):
assert key in self.inputs(), 'Unkown input dimension: {}'.format(key)
return self.inputs().index(key)
def project(self, key, value):
''' Interpolate tables at specific value(s) along a given dimension. '''
if not isIterable(value):
delete_input_dim = True
else:
delete_input_dim = False
value = np.asarray(value)
value = isWithin(key, value, (self.refs[key].min(), self.refs[key].max()))
axis = self.getAxisIndex(key)
# print('interpolating lookup along {} (axis {}) at {}'.format(key, axis, value))
new_tables = {}
for k, v in self.items():
new_tables[k] = interp1d(self.refs[key], v, axis=axis)(value)
new_refs = self.refs.copy()
if delete_input_dim:
# print('removing {} input dimension'.format(key))
del new_refs[key]
else:
# print('updating {} reference values'.format(key))
new_refs[key] = value
return self.__class__(new_refs, new_tables)
def projectN(self, projections):
lkp = self.__class__(self.refs, self.tables)
for k, v in projections.items():
lkp = lkp.project(k, v)
return lkp
def move(self, key, index):
if index == -1:
index = self.ndims() - 1
iref = self.getAxisIndex(key)
for k in self.keys():
self.tables[k] = np.moveaxis(self.tables[k], iref, index)
refkeys = list(self.refs.keys())
del refkeys[iref]
refkeys = refkeys[:index] + [key] + refkeys[index:]
self.refs = {k: self.refs[k] for k in refkeys}
def interpVar(self, ref_value, ref_key, var_key):
return np.interp(
ref_value, self.refs[ref_key], self.tables[var_key], left=np.nan, right=np.nan)
def interpolate1D(self, key, value):
return SmartDict({k: self.interpVar(value, key, k) for k in self.outputs()})
class SmartLookup(Lookup):
def __repr__(self):
return 'Smart' + super().__repr__()
def projectOff(self):
# Interpolate at zero amplitude
lkp0 = self.project('A', 0.)
# Move charge axis to end in all tables
Qaxis = lkp0.getAxisIndex('Q')
for k, v in lkp0.items():
lkp0.tables[k] = np.moveaxis(v, Qaxis, -1)
# Iterate along dimensions and take first value along corresponding axis
for i in range(lkp0.ndims() - 1):
for k, v in lkp0.items():
lkp0.tables[k] = v[0]
# Keep only charge vector in references
lkp0.refs = {'Q': lkp0.refs['Q']}
return lkp0
def projectDCs(self, amps=None, DCs=1.):
if amps is None:
amps = self.refs['A']
elif not isIterable(amps):
amps = np.array([amps])
if not isIterable(DCs):
DCs = np.array([DCs])
# project lookups at zero and defined amps
if amps is None:
amps = self.refs['A']
lkp0 = self.project('A', 0.)
lkps = self.project('A', amps)
# Retrieve amplitude axis index, and move amplitude to first axis
A_axis = lkps.getAxisIndex('A')
lkps.move('A', 0)
# Define empty tables dictionary
tables_DCavg = {}
# For each variable
for var_key in lkp0.outputs():
# Get OFF and ON (for all amps) variable values
x_on, x_off = lkps.tables[var_key], lkp0.tables[var_key]
# Initialize empty table to gather DC-averaged variable (DC size + ON table shape)
x_avg = np.empty((DCs.size, *x_on.shape))
# Compute the DC-averaged variable for each amplitude-DC combination
for iA, Adrive in enumerate(amps):
for iDC, DC in enumerate(DCs):
x_avg[iDC, iA] = x_on[iA] * DC + x_off * (1 - DC)
# Assign table in dictionary
tables_DCavg[var_key] = x_avg
refs_DCavg = {**{'DC': DCs}, **lkps.refs}
lkp = self.__class__(refs_DCavg, tables_DCavg)
# Move DC ot last axis and amplitude back to its original axis
lkp.move('DC', -1)
lkp.move('A', A_axis)
return lkp
class SmartDict():
# Key patterns
suffix_pattern = '[A-Za-z0-9_]+'
xinf_pattern = re.compile('^({})inf$'.format(suffix_pattern))
taux_pattern = re.compile('^tau({})$'.format(suffix_pattern))
def __init__(self, d):
self.d = d
def __repr__(self):
return 'SmartDict(' + ', '.join(self.d.keys())
def items(self):
return self.d.items()
def keys(self):
return self.d.keys()
def values(self):
return self.d.values()
def alphax(self, x):
return self.d['alpha{}'.format(x)]
def betax(self, x):
return self.d['beta{}'.format(x)]
def taux(self, x):
return 1 / (self.alphax(x) + self.betax(x))
def xinf(self, x):
return self.alphax(x) * self.taux(x)
def __getitem__(self, key):
if key in self.d:
return self.d[key]
else:
m = self.taux_pattern.match(key)
if m is not None:
return self.taux(m.group(1))
else:
m = self.xinf_pattern.match(key)
if m is not None:
return self.xinf(m.group(1))
else:
raise KeyError(key)
def __setitem__(self, key, value):
self.d[key] = value
def pop(self, key):
return self.d.pop(key)
if __name__ == '__main__':
refs = {
'a': np.logspace(np.log10(16), np.log10(64), 5) * 1e-9,
'f': np.array([100, 200, 500, 1e3, 2e3, 3e3, 4e3]) * 1e3,
'A': np.logspace(np.log10(1), np.log10(600), 100) * 1e3,
'Q': np.arange(-80, 50)
}
dims = [refs[x].shape for x in refs.keys()]
tables = {
'alpham': np.ones(dims) * 2,
'betam': np.ones(dims) * 3
}
lkp4d = SmartLookup(refs, tables)
print(lkp4d, lkp4d.dims())
lkp1d = lkp4d.projectN({'a': 32e-9, 'f': 500e3, 'A': 100e3})
print(lkp1d, lkp1d.dims())
for k in ['alpham', 'betam', 'taum', 'minf']:
print(k, lkp1d[k])
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