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plot_FR_profile.py
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Fri, May 10, 15:29

plot_FR_profile.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
# @Author: Theo Lemaire
# @Date: 2017-02-13 12:41:26
# @Email: theo.lemaire@epfl.ch
# @Last Modified by: Theo Lemaire
# @Last Modified time: 2018-12-09 10:07:56
''' Plot firing rate temporal profile of specific simulation outputs. '''
import logging
from argparse import ArgumentParser
import matplotlib.pyplot as plt
from PySONIC.utils import logger, OpenFilesDialog
from PySONIC.plt import plotFRProfile
# Set logging level
logger.setLevel(logging.INFO)
def main():
ap = ArgumentParser()
# Runtime options
ap.add_argument('-v', '--verbose', default=False, action='store_true', help='Increase verbosity')
ap.add_argument('-i', '--inputfiles', type=str, nargs='+', default=None, help='Input files')
ap.add_argument('--var', type=str, default='Vm', help='Variable to plot')
ap.add_argument('--nooffset', default=False, action='store_true',
help='Discard post-offset spikes')
ap.add_argument('--nofirst', default=False, action='store_true',
help='Discard first spike')
ap.add_argument('--log', action='store_true', default=False,
help='Log color scale')
ap.add_argument('-c', '--cmap', type=str, default=None,
help='Colormap name')
ap.add_argument('--ref', type=str, default='A',
help='Color code reference')
# Parse arguments
args = {key: value for key, value in vars(ap.parse_args()).items() if value is not None}
zscale = 'log' if args['log'] else 'lin'
cmap = args.get('cmap', None)
zref = args.get('ref', None)
filepaths = args['inputfiles'] if 'inputfiles' in args else OpenFilesDialog('pkl')[0]
if not filepaths:
logger.error('No input file')
return
loglevel = logging.DEBUG if args['verbose'] else logging.INFO
logger.setLevel(loglevel)
# Plot phase-plane diagram
plotFRProfile(filepaths, args['var'], no_offset=args['nooffset'], no_first=args['nofirst'],
zref=zref, zscale=zscale, cmap=cmap)
plt.show()
if __name__ == '__main__':
main()

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