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History Graph
History Graph
Commit | Author | Details | Committed | ||||
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afdde67646ea | tlemaire | moved example scripts to examples folder and defined README.mdpp markdown… | Apr 4 2020 | ||||
cc5348bc40ca | tlemaire | added __eq__ methods to pneuron and nbls classes | Apr 3 2020 | ||||
9239911c1f35 | tlemaire | added ASTIM_REL_CONV_THR to constants file. | Mar 31 2020 | ||||
9dcd3884ae33 | tlemaire | added TC fs lookup. | Mar 30 2020 | ||||
4e96a816343e | tlemaire | added MRG fs lookup. | Mar 30 2020 | ||||
8a68be82c2d8 | tlemaire | added MRG lookup. | Mar 27 2020 | ||||
8f0bbde630a7 | tlemaire | renamed fibers point-neuron models for better interpretability. completed fiber… | Mar 27 2020 | ||||
a43249c6ecf1 | tlemaire | tested MRG lookups generation | Mar 26 2020 | ||||
a4eafd9f8059 | tlemaire | corrected typo in SweeneyNode description. | Mar 26 2020 | ||||
cf163f8c94cb | tlemaire | added addExcitationInset to pltutils | Mar 24 2020 | ||||
678f3f5e229d | tlemaire | added getLogStartPoint to utils | Mar 23 2020 | ||||
84694f9507f6 | tlemaire | added x axis sharing in GroupedTimeSeries | Mar 21 2020 | ||||
066e8e416305 | tlemaire | added polyfit amd extrapolate capabilities to Lookup class. | Mar 19 2020 | ||||
8f4b9911c0d3 | tlemaire | Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic | Feb 28 2020 | ||||
c8a9ea2beb92 | tlemaire | added extra functionalities to Lookup class. continued fiber nodes notebook. | Feb 28 2020 | ||||
7d61ef15bd3b | vicari | Merge solved | Feb 28 2020 | ||||
be6c868e4e5f | vicari | Correction in drives | Feb 28 2020 | ||||
edc36b1686d6 | tlemaire | added fiber ndoes analysis notebook | Feb 27 2020 | ||||
a46f7227e040 | tlemaire | added better handling of ybounds in timeseries. added MRG neuron class. | Feb 27 2020 | ||||
165caa8bf488 | tlemaire | moved getMeta to utils | Feb 20 2020 | ||||
7f8a3be5ceb4 | tlemaire | changed meta property of model classes to return solely model information. | Feb 20 2020 | ||||
b7d520b9ed42 | tlemaire | added LogBatch class | Feb 18 2020 | ||||
b68fc5d800ef | tlemaire | added isPickable function. corrected install_requires list in setup file. | Feb 18 2020 | ||||
683ec602313d | tlemaire | added gaussian function to utils. | Feb 14 2020 | ||||
31cc2d15993a | tlemaire | updated README (added instructions for git-lfs install) | Feb 14 2020 | ||||
68961385d17e | tlemaire | added copy method to all model classes. added TI US notebook. updated… | Feb 11 2020 | ||||
b62507055396 | tlemaire | adapted simAndSave function to work also with source-based titration cases. | Feb 5 2020 | ||||
478c17a7e098 | tlemaire | changed erroneous calls to parseAmp to parseAmplitude in parsers module | Feb 5 2020 | ||||
96d3c580ee81 | tlemaire | replaced erroneous "return NotImplementedError" statements by "raise… | Feb 5 2020 | ||||
8907f78b742a | tlemaire | correctd mismatch in ElectricDrive | Feb 5 2020 | ||||
892f924d6e9e | tlemaire | renamed ElectricDrive A to I | Feb 5 2020 | ||||
31ef6228207a | tlemaire | introduced properties in classes of drives and protocols modules. | Feb 5 2020 | ||||
073e28b388f6 | tlemaire | added xkey property to XDrive class and Arange property to pneuron and nbls… | Feb 3 2020 | ||||
27d8aafffa88 | tlemaire | Created Drive objects inheritance scheme (now used in all model classes). | Feb 3 2020 | ||||
dba63f835a31 | tlemaire | corrected docstring errors in pneuron Cm0 and Qm0 | Feb 3 2020 | ||||
a42d9f542bed | tlemaire | added FH fs lookups | Feb 3 2020 | ||||
062e541857dc | tlemaire | added lookups files in separate lookups folder using LFS. | Feb 3 2020 | ||||
ed7412335d9f | tlemaire | Initialized LFS. deleted lookup files from neuron folder. | Feb 3 2020 | ||||
9d0666784d2d | tlemaire | Created AcousticSource class to be used for US simulations. | Feb 3 2020 | ||||
eec847e65a7a | tlemaire | added sundt fs lookups. adapted RS fs lookups. adapted nbls.getLookup2D method… | Jan 26 2020 | ||||
6846298198d4 | tlemaire | added interp_method Lookup attribute to enable choice of lookup interpolation… | Jan 26 2020 | ||||
c995e8999df7 | tlemaire | Modified Lookup class (new properties, corrected methods). | Jan 26 2020 | ||||
38dc94d61fe7 | tlemaire | added DQ_LOOKUP constant (used in run_lookups.py) | Jan 26 2020 | ||||
1919e3105ee4 | tlemaire | added toDict, toJson, fromDict and fromJson methods to Lookup class. | Jan 23 2020 | ||||
f4ea3f48765e | vicari | Merge completed | Jan 22 2020 | ||||
e4f4732ffbab | vicari | Extra entry in bls lookup | Jan 22 2020 | ||||
5e77509ee19d | tlemaire | added membrane area attributes to IB and STN neurons | Jan 22 2020 | ||||
fdde4affcc90 | tlemaire | improved modularity of TestBase class | Jan 17 2020 | ||||
8478fde7a5d4 | tlemaire | Automated getModel using automatically generated dictionary of models with… | Jan 14 2020 | ||||
382b41779471 | tlemaire | Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic | Dec 14 2019 | ||||
a0b6724a45a5 | tlemaire | removed plotVarQSSDynamics function from QSS and plot_QSS | Dec 14 2019 | ||||
dd4bcd97ad83 | vicari | Merge solved | Dec 13 2019 | ||||
cad5a41a29b0 | vicari | Correction in of the find_tpeaks function in postpro.py | Dec 13 2019 | ||||
5c9777d249d7 | tlemaire | updated STN neuron notebook with correct model parameters and enabled… | Dec 10 2019 | ||||
4a918211cc11 | tlemaire | added boundDataframe method to postpro module | Dec 9 2019 | ||||
d0b57c5e137d | tlemaire | re-ran and completed STN notebook | Dec 6 2019 | ||||
82b1e406d267 | tlemaire | updated README with instructions on how to cite. | Dec 4 2019 | ||||
bac984960467 | tlemaire | corrected nbls fullDerivatives, simFull and simHybrid methods (removed phi… | Dec 4 2019 | ||||
a29eea02e330 | tlemaire | changed Lookup repr method. added test_lkp test file. | Dec 4 2019 | ||||
f8107574d0a8 | tlemaire | added threshold module with isolated threshold function (now used for all… | Dec 2 2019 | ||||
19881e729753 | tlemaire | mofified SPIKE_MIN_QAMP and SPIKE_MIN_VAMP from 5 (nC/cm2 - mV) to 3 | Nov 27 2019 | ||||
d27e95459175 | tlemaire | added sundt lookups | Nov 27 2019 | ||||
6797e5e1f52b | tlemaire | moved pushbullet key file to package root | Nov 26 2019 | ||||
977bea19e55e | tlemaire | commented useless parameters in Sundt class | Nov 26 2019 | ||||
6deb0da8868d | tlemaire | added internal bls.simUntilConvergence method (without decorators) to enable… | Nov 26 2019 | ||||
647c007ad5d7 | tlemaire | added Eleak logging upon Sundt class creation. | Nov 25 2019 | ||||
974a5f7d7fef | tlemaire | cleaned up Sundt class | Nov 22 2019 | ||||
b46ab57b16d3 | tlemaire | corrected borg-graham formalism methods | Nov 22 2019 | ||||
6197f85f0709 | tlemaire | corrected Astim factor error in pneuron desc. added extra parsing methods | Nov 20 2019 | ||||
456fa71d226b | tlemaire | added qss_vars and pulse-avg run options to nbls simSonic method. | Nov 20 2019 | ||||
d14a124a4078 | tlemaire | implemented GenericPlot.wraptitle method | Nov 15 2019 | ||||
681033068b15 | tlemaire | updated titrations log | Nov 15 2019 | ||||
5da540f0f401 | tlemaire | moved model.simAndSave to utils to facilitate use in ExSONIC | Nov 14 2019 | ||||
36119dd01aec | tlemaire | moved filecode function to utils | Nov 14 2019 | ||||
de255e65bccc | tlemaire | Major update: | Nov 14 2019 | ||||
a26469ca67dc | tlemaire | added equality operators to TimeProtocol and PulsedProtocol classes. | Nov 14 2019 | ||||
4a5626da478c | tlemaire | improved filecodes generation from meta dictionary in Model.filecode | Nov 13 2019 | ||||
bc1800471252 | tlemaire | created Timeprotocol and PulsedProtocol classes, now used in pneuron, nbls and… | Nov 13 2019 | ||||
fa8f94b4198c | tlemaire | checked iM taup against ref. (Yamada 1989) | Nov 7 2019 | ||||
f1d2ab4cfb4b | tlemaire | added PointNeuron alphaBorgGaham and betaBorgGraham methods, now used for sundt… | Nov 7 2019 | ||||
163afcce99af | tlemaire | renamed PhaseDiagram to SpikePlot (more appropriate). simplified Sundt model… | Nov 6 2019 | ||||
a2c1e3e2eb02 | tlemaire | modified nbls.QSSderivatives and nbls.__simQSS to work with any specified… | Nov 6 2019 | ||||
7a48bab58176 | tlemaire | renamed iKm to iM and kmk gate to p in Sundt to match formalism ot Cortical… | Nov 5 2019 | ||||
54b7854b35c3 | tlemaire | parametrized Caiinf in sundt model (checked for correct equivalence at Vm0) | Nov 5 2019 | ||||
15f0e82253ac | tlemaire | corrected error in effvars for plotGatingKinetics | Nov 5 2019 | ||||
7a4a9166c1ad | tlemaire | corrected Ikd kinetics (n and l zeta signs matching those of Borg-Graham 1991… | Nov 5 2019 | ||||
58e5ce4415c8 | vicari | Sign correction and comments | Nov 5 2019 | ||||
fc00bf556d5f | vicari | Correction in potassium kinetics | Nov 5 2019 | ||||
a35753429a7e | vicari | Correction of the delayed rectifier potassium kinetics | Nov 5 2019 | ||||
83ea55354a98 | tlemaire | added time step reduction to sundt class. code is running but simulations and… | Nov 1 2019 | ||||
894410e31f4a | tlemaire | debugged sundt class (estim now running) | Nov 1 2019 | ||||
3d652adfb7ce | tlemaire | further corrections to the sundt class, and implementation of Eleak computation… | Nov 1 2019 | ||||
5a508487f9f1 | tlemaire | identified parameters in Sundt expressions and highlighted discrepancies with… | Nov 1 2019 | ||||
eb70f6afb883 | tlemaire | corrected errors in sundt class (now compiling). minf and taum both seem off… | Nov 1 2019 | ||||
ab186ad4e8bf | tlemaire | Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic | Nov 1 2019 | ||||
0394f06c57fd | tlemaire | modified README | Nov 1 2019 | ||||
1a18aaa3abec | vicari | implemented Sundt model | Nov 1 2019 | ||||
0638d724be40 | tlemaire | added sundt import to neurons. corrected pushbullet requirement in setup | Oct 15 2019 | ||||
aee2c4e6cb21 | tlemaire | added Lookup.tile and modified SmartLookup.projectDC. modified nbls. | Oct 10 2019 | ||||
20f96c135bce | tlemaire | defined Lookup algorihtmic operators. defined OnOffSimulator class. defined… | Oct 7 2019 |
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