R4670/plotmaster
R4670/plot
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
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487fd2f0db0a | tlemaire | validated IB neuron gating kinetics for E-STIM | Apr 17 2018 | |||
a5aaa17fbd90 | tlemaire | removed dependency on colorlover in plotComp | Apr 14 2018 | |||
d5e56c2f9c40 | tlemaire | replaced detectSpikes by the more robust findPeaks. added a plot_spikes script… | Apr 4 2018 | |||
1ac82339eaf3 | tlemaire | modified plotComp to take only 1 input variable and added option to plot inset | Mar 30 2018 | |||
377594fb12b0 | tlemaire | added prominence threshold constant for spike detection. added skeleton for IB… | Mar 29 2018 | |||
3bee78ffb4bc | tlemaire | added extra options to plotComp (custom ticks, black legend with colored plots) | Mar 21 2018 | |||
3fabf680de73 | tlemaire | added detailed docstring to detectPeaks | Mar 20 2018 | |||
1c8f0234e7e7 | tlemaire | changes to plotComp function allowing to customize linestyles, colors and… | Mar 19 2018 | |||
4ffaa73494ea | tlemaire | introduced custom defined InputError exceptions (instead of assert statements)… | Mar 15 2018 | |||
01238213b788 | tlemaire | Switched from ode (lsoda) to odeint for classic method to see if it solves… | Mar 13 2018 | |||
1b6d6a579519 | tlemaire | implemented neuron-specific charge interval for lookup creation. | Mar 13 2018 | |||
edd5594d9646 | Theo Lemaire | replaced channels by neurons | Mar 12 2018 | |||
63c842041ef8 | tlemaire | updated README and LICENCSE files. added extra BLS lookups. corrected titration… | Mar 7 2018 | |||
89d20f6d2cb6 | tlemaire | updated titration methods and generated LeechP lookups | Feb 28 2018 | |||
c59a8267c97e | tlemaire | corrected LeechP implementation using dynamic Nernst potentials for Sodium and… | Jan 9 2018 | |||
33ee63af70aa | tlemaire | Lots of corrections and improvements to the LeechP model implementation. E-STIM… | Dec 12 2017 | |||
ae51b3bafaec | tlemaire | Added sonophore diameter to ASTIM files naming, and changed DF to 2 decimals… | Nov 29 2017 | |||
1bb50e8f0025 | tlemaire | validated effective method for LeechT neuron, added that neuron to test_values. | Nov 27 2017 | |||
c9dad3d35684 | tlemaire | corrected code for LeechT neuron, and validated it on electrical stimuli | Nov 22 2017 | |||
6be1756dda64 | tlemaire | added biomech and biophys parameters directly as BilayerSonophore class… | Sep 12 2017 | |||
c67c8c39a93b | tlemaire | added input pltvars checking to plot functions | Sep 10 2017 | |||
43647159e654 | tlemaire | replaced print statements with logging statements in internal modules | Sep 10 2017 | |||
b0a231289d69 | tlemaire | added standardized plotEffCoeffs function to pltutils | Sep 2 2017 | |||
08165e6a06f3 | tlemaire | replaced eval statements from plotGatingKinetics & plotRateConstants by getattr… | Sep 1 2017 | |||
43f0618daa4a | tlemaire | removed old plot_RS_rate_constants script | Sep 1 2017 | |||
4c66e98d971e | tlemaire | added standardized plotRateConstants method | Sep 1 2017 | |||
3f5921510ae9 | tlemaire | added plotGatingKinetics method to plot the steady-sate and time constant… | Sep 1 2017 | |||
32c77b1353fa | tlemaire | added temporary code to delay last pulse during PW stimuli in runEffective… | Sep 1 2017 | |||
e2ff032a6759 | tlemaire | added option to specify labels in plotComp | Sep 1 2017 | |||
c61b8e3492f6 | tlemaire | renamed LoadParams to load_BLS_params | Aug 28 2017 | |||
b50efb81b3cb | tlemaire | updated test_basic.py with more thorough tests. Added more thorough input… | Aug 28 2017 | |||
06127af4b669 | tlemaire | included default plotting scheme inside neuron classes definition. Modified… | Aug 25 2017 | |||
c30d03edb7cc | tlemaire | adapted plotComp to deal with pulsed ESTIM outputs and MECH outputs. corrected… | Aug 25 2017 | |||
0a89dde7f847 | tlemaire | implemented runMechBatch function. adapted plotBatch function to deal with MECH… | Aug 25 2017 | |||
3c218a52595b | tlemaire | Added pulsed stimuli handling to SolverElec. Implemented moved titration… | Aug 25 2017 | |||
3e6f232a2a2e | tlemaire | debugging of plot functions | Aug 24 2017 | |||
af10a48546b7 | tlemaire | created plotting module inside package, with plotComp and plotBatch functions | Aug 23 2017 | |||
abfba2e921d7 | tlemaire | first commit to c4science | Aug 23 2017 |
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