Homec4science
Diffusion PySONIC (old) (master) Graph

R4670/tests
master

History Graph

CommitAuthorDetailsCommitted
4ca2ae140d75tlemaire
added test_Qovertones.py test script 
May 11 2021
bebce73d9405tlemaire
updated MANIFEST file. 
Jun 3 2020
93d5100bbbcetlemaire
introduced lambda function for test.execute calls 
Apr 22 2020
8f0bbde630a7tlemaire
renamed fibers point-neuron models for better interpretability. completed fiber… 
Mar 27 2020
27d8aafffa88tlemaire
Created Drive objects inheritance scheme (now used in all model classes). 
Feb 3 2020
9d0666784d2dtlemaire
Created AcousticSource class to be used for US simulations. 
Feb 3 2020
c995e8999df7tlemaire
Modified Lookup class (new properties, corrected methods). 
Jan 26 2020
a29eea02e330tlemaire
changed Lookup repr method. added test_lkp test file. 
Dec 4 2019
bc1800471252tlemaire
created Timeprotocol and PulsedProtocol classes, now used in pneuron, nbls and… 
Nov 13 2019
bd840351d13ftlemaire
corrected SweeneyNode alpham equation according to Basser and Roth, 1991. 
Sep 10 2019
4c34c2a9dc9atlemaire
adapted test_sims (avoiding sweeney neuron) 
Aug 29 2019
22abb7710105tlemaire
created separate test module with TestBase class. renamed test_basic into… 
Jun 28 2019
d909927fd268tlemaire
defined TestBase class with smart subset handling (inherited by TestSims) 
Jun 27 2019
eb0324a5cd27tlemaire
rewrote test_basic into a class 
Jun 27 2019
fdebb58e8442tlemaire
refefined derEffstates construction to return a dictionary of function. 
Jun 19 2019
1a9277e6bbb4tlemaire
corrected error in subset parsing 
Jun 19 2019
d4798d527ccctlemaire
added custom parsing to paper figure scripts 
Jun 17 2019
66eaf2f41fbatlemaire
corrected y, t order error in nbls.fullDerivatives. added custom parsing in… 
Jun 17 2019
b0f51febd195tlemaire
updated constants 
Jun 13 2019
b42a0de93240tlemaire
updated all file headers 
Jun 12 2019
6e017b421f3etlemaire
replaced "neuron" by "pneuron" for all PointNeuron instances 
Jun 12 2019
af6f9a02ed42Theo Lemaire
reformatted simulate methods of bls, pneuron and nbls classes to return output… 
May 31 2019
e08e8c736efaTheo Lemaire
replaced progressbar2 by tqdm 
May 29 2019
440f5459adf4Theo Lemaire
added HybridSimulator used for nbls.runHybrid 
May 29 2019
9f09f2fdc039Theo Lemaire
Changed titration functions (now using generic titrate), Implemented Xinf… 
Apr 4 2019
2f63e4926c36tlemaire
improved plotRheobaseAmps function. improved arguments parsing in command line… 
Nov 22 2018
fe08c7f79e09tlemaire
moved run_tests.sh to tests folder 
Sep 28 2018
8819bbb0e66ftlemaire
cleaned up deprecated folder. added notebook about balance quasi-steady… 
Sep 25 2018
954e545fa6actlemaire
turned intermolecular pressure test script into notebook. removed Input error… 
Sep 24 2018
de613ac9c35atlemaire
replaced SonicNeuron by NeuronalBilayerSonophore 
Sep 23 2018
2a334b211bfftlemaire
major changes to the package (PointNeuron, SonicNeuron, ...) 
Sep 23 2018
4404c3e28711tlemaire
merged BLS_lookups file into 1 file with 2D (a, Qm0) lookup 
Sep 12 2018
54c29644be81tlemaire
replaced runEffective by runSONIC and 'effective' keyword by 'sonic'. 
Aug 25 2018
043172721a44tlemaire
changed package name to PySONIC. 
Aug 21 2018
2267460a3b52tlemaire
removed NEURON related code from package (runNEURON method, NMODL folder), used… 
Aug 21 2018
1f7dfe26adabtlemaire
removed stimulation parameters assignment in MOD files 
Jul 24 2018
e18d135cbc54tlemaire
new lookups for RS, FS, LTS, RE and TC neurons with extended charge range (down… 
Jul 24 2018
9a37cd335585tlemaire
replaced titrateEStim and titrateAStim funcitons by EStimTitrator and… 
Jul 24 2018
b1b868c26791tlemaire
replaced runAStim function by AStimWorker class, added multiprocessing option… 
Jul 23 2018
8e3d2db927b5tlemaire
grouped mod files in single directory. defined stimonoff procedure in separate… 
Jul 18 2018
3b9d8b293e8atlemaire
minor modifications to plotEffVars, rescale and test_intermolecular_pressure.py 
Jun 18 2018
7d33ab6ec1f9tlemaire
added script to test intermoleulcar pressure approximation. 
May 25 2018
70d9c59ab1d9tlemaire
added IB testing in test_values script 
Apr 18 2018
d5e56c2f9c40tlemaire
replaced detectSpikes by the more robust findPeaks. added a plot_spikes script… 
Apr 4 2018
dd51b4283191tlemaire
corrected TOFF integration error in SolverElec. added PW tests to test_basic.py 
Mar 19 2018
5b8f09fbd295tlemaire
renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to… 
Mar 16 2018
50e85131e3d9tlemaire
added runMechSingle to simutils and MECH_run script 
Mar 15 2018
1edd575f6465Theo Lemaire
replaced DF by DC, and added pandas dataframes to store and retrieve simulation… 
Mar 13 2018
edd5594d9646Theo Lemaire
replaced channels by neurons 
Mar 12 2018
63c842041ef8tlemaire
updated README and LICENCSE files. added extra BLS lookups. corrected titration… 
Mar 7 2018
1bb50e8f0025tlemaire
validated effective method for LeechT neuron, added that neuron to test_values. 
Nov 27 2017
6249b5298f4ctlemaire
debugged double printing issue of logging statements 
Sep 12 2017
6be1756dda64tlemaire
added biomech and biophys parameters directly as BilayerSonophore class… 
Sep 12 2017
ffed8b864bbftlemaire
replaced getopt with argparse in test scripts 
Sep 6 2017
7fff2117cd10tlemaire
replaced printPct by progressbar 
Sep 6 2017
6688904b2a82tlemaire
added smart loading of derived parameters from lookup file at BLS initiation 
Sep 3 2017
9015dddabee1tlemaire
test pre-commit hook 
Sep 3 2017
f51d67fdf64atlemaire
updated test_values 
Sep 3 2017
92e2cd326a4etlemaire
added profiling option for each method inside test_basic.py, using cProfile and… 
Sep 3 2017
f875411afd08tlemaire
separated test into test_basic (initiating solvers and running simple… 
Sep 2 2017
cf8e6794b04ctlemaire
debugged and validated new runEffective method: interpolation datasets at… 
Aug 30 2017
c5cad185b222tlemaire
added getNeuronsDict function to utils 
Aug 29 2017
1ea422ad10ebtlemaire
optimized effective method: 2D (amp, charge) coefficients interpolators are… 
Aug 28 2017
90c71fb8d8e5tlemaire
updated run functions to deal with zero offset. updated test_graphs 
Aug 28 2017
3120330fdccdtlemaire
updated test_graphs.py 
Aug 28 2017
c61b8e3492f6tlemaire
renamed LoadParams to load_BLS_params 
Aug 28 2017
b50efb81b3cbtlemaire
updated test_basic.py with more thorough tests. Added more thorough input… 
Aug 28 2017
c9053e689690tlemaire
added titrateEStim and titrateEStimBatch functions 
Aug 25 2017
3c218a52595btlemaire
Added pulsed stimuli handling to SolverElec. Implemented moved titration… 
Aug 25 2017
4f9a8fd2aed4tlemaire
moved some utils functions into simutils & pltutils modules 
Aug 23 2017
abfba2e921d7tlemaire
first commit to c4science 
Aug 23 2017
c4science · Help