Diffusion PySONIC (old) (master) History

R4670/PySONIC/multicomp
master

Jun 20 2021

added full_output option to simAndSave function
888fa278603f
·tlemaire on Jun 20 2021, 16:31.

Jun 19 2021

replaced gamma indications by axvspans in FiberBenchmark.plotQm
2372e0a6dd73
·tlemaire on Jun 19 2021, 14:14.

Jun 18 2021

corrected gamma indicators plotting in FiberBenchmark.plotQm
8b1c341f8737
·tlemaire on Jun 18 2021, 20:34.

Jun 17 2021

updated transient divergence evaluation in passive benchmark
41830bd40849
·tlemaire on Jun 17 2021, 18:45.
added XYMap.extrapolate method. modified XYMap.getOutput to return (nx, nz)…
4792bed35eeb
·tlemaire on Jun 17 2021, 13:33.

Jun 16 2021

modified exponential build up assessment in passive benchmark
1e6c565cde54
·tlemaire on Jun 16 2021, 23:08.
removed clip_on statements
d84713700744
·tlemaire on Jun 16 2021, 19:20.

Jun 9 2021

added os_name as logbal variable in utils. now using it also to output LogBatch.
f456a30eea93
·tlemaire on Jun 9 2021, 17:25.
added workaround to coupled_nbls simAndSave method to handle long filepaths on…
41522f45c0c7
·tlemaire on Jun 9 2021, 00:39.

Jun 8 2021

worked on benchmark plotting modularity
82b931897c27
·tlemaire on Jun 8 2021, 22:12.
corrected benchmarks plotting and evaluation methods
4f17c4046cf6
·tlemaire on Jun 8 2021, 21:30.

Jun 3 2021

added subset argument to FiberBenchmark.runSimsOverAmplitudeSpace in order to…
a182936772ae
·tlemaire on Jun 3 2021, 10:51.

May 31 2021

added benchmark nodecolors and periodicity line patterns
1ee42570341d
·tlemaire on May 31 2021, 18:19.

May 28 2021

updated pandas requirements (now >=1.2.4) to ensure TimeSeries object are…
0a593ebe88fb
·tlemaire on May 28 2021, 17:03.

May 27 2021

added factor to Qnorm pltvar.
47f7640b7bcb
·tlemaire on May 27 2021, 20:49.

May 26 2021

replaced computeDiffAreaUnderCurve by computeMeanNormDifference (more robust…
417a3bd45505
·tlemaire on May 26 2021, 18:56.
corrected nan values handling in XYMap.
87ed4cd909be
·tlemaire on May 26 2021, 16:33.
improved FiberBenchmark
fde48404e155
·tlemaire on May 26 2021, 13:44.
added new divmaps module.
02b5fdf9949f
·tlemaire on May 26 2021, 10:36.

May 25 2021

added divergence computation methods to benchmarks
a4d16de1fb6a
·tlemaire on May 25 2021, 21:08.
improved naming, access and iterating of DriveArray objects.
c187b85f3573
·tlemaire on May 25 2021, 15:19.

May 20 2021

modified xscale in benchmark 2D plot
b4ccaf49772d
·tlemaire on May 20 2021, 11:20.

May 19 2021

modified coupled_nbls.simAndSave to just simulate if no output directory is…
41fde2c39385
·tlemaire on May 19 2021, 22:07.
added option to initialize passive neuron from name code. added initFromMeta…
35b4216f3b21
·tlemaire on May 19 2021, 12:22.
added workaround solution for passive generic lookup name
40ac2cbf792f
·tlemaire on May 19 2021, 11:26.

May 18 2021

added dump and dumpOutputsOtherThan methods to TimeSeries classes
3d60eae04053
·tlemaire on May 18 2021, 14:25.

May 17 2021

added half-cycle offset and interpolation in timeseries cycle averaging
66afa784ef55
·tlemaire on May 17 2021, 22:21.
started implementing gamma evaluation method
9b83a80b55f5
·tlemaire on May 17 2021, 20:25.

May 15 2021

started working on coupled_nbls module
23adeab812fd
·tlemaire on May 15 2021, 20:47.

May 14 2021

started working on coupled_nbls module
6aadfe75ac22
·tlemaire on May 14 2021, 19:50.

Mar 23 2021

added array-typed charge input (i.e. US-periodic profile) option to…
e7842427f677
·tlemaire on Mar 23 2021, 13:46.

Sep 30 2020

adjusted benchmark classes
405697583757
·tlemaire on Sep 30 2020, 19:29.

Sep 25 2020

added SonicBenchmark.phaseplotQnorm method
b89adb5fba58
·tlemaire on Sep 25 2020, 19:54.
removed OldDriveDivergenceMap, added GammaDivergenceMap
3e45a355b863
·tlemaire on Sep 25 2020, 14:43.
resolved numerical errors on multicomp benchmark (npc = 100, atol = 1e-10)
6b0629b0479c
·tlemaire on Sep 25 2020, 13:10.

Sep 24 2020

added multicomp module
6aa3e623b782
·tlemaire on Sep 24 2020, 20:49.