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injected_screens.html
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Created
Mon, Jul 21, 07:25
Size
10 KB
Mime Type
text/html
Expires
Wed, Jul 23, 07:25 (2 d)
Engine
blob
Format
Raw Data
Handle
27503842
Attached To
R4897 i2b2-webclient
injected_screens.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
<html>
<body>
<div
id=
'MedCo-mainDiv'
>
<div
id=
"MedCo-TABS"
class=
"yui-navset"
>
<!--tabs definitions-->
<ul
class=
"yui-nav"
>
<li
id=
"MedCo-TAB0"
class=
"selected"
><a
href=
"#MedCo-TAB0"
><em>
Secure Query Dashboard
</em></a></li>
<!--<li id="MedCo-TAB1"><a href="#MedCo-TAB1"><em>Genomic Annotations Attributes</em></a></li>-->
<!--<li id="MedCo-TAB2"><a href="#MedCo-TAB2"><em>Clinical Ontology Attributes</em></a></li>-->
<li
id=
"MedCo-TAB3"
><a
href=
"#MedCo-TAB3"
><em>
Plugin Help
</em></a></li>
</ul>
<!-- tabs definition -->
<div
class=
"yui-content"
id=
"MedCo-CONTENT"
>
<!-- Secure Query DashBoard tab -->
<div
class=
"MedCo-Dashboard"
>
<!-- run - reset - drop patient set - query for query status - decrypt result -->
<div
class=
"MedCo-ControlButtons"
>
<!-- old popup todo delete <!– Popup –>-->
<!--<div id="annoMessage" class="popupMessage">-->
<!--<div>-->
<!--<h1>Annotations</h1>-->
<!--<div style="margin: 5px 10px 10px 10px">-->
<!--<label>-->
<!--Select an annotation:-->
<!--<input type="search" id="searchAnnotationBox">-->
<!--<select id="annotationList" onchange="i2b2.MedCo.ctrlr.loadAnnotationValues()">-->
<!--</select>-->
<!--</label>-->
<!--<br>-->
<!--<label>-->
<!--Select a value:-->
<!--<input type="search" id="searchAnnotationValueBox">-->
<!--<!–<div id="MED-loadingValues" style="float:left;"></div>–>-->
<!--<!–todo often too many values (20 000) the select is useless and slow–>-->
<!--<!–<select id="annotationValueList">–>-->
<!--<!–</select>–>-->
<!--<!–use span for inline text–>-->
<!--<span id="selectedAnnotationValue"></span>-->
<!--</label>-->
<!--<!–<br>–>-->
<!--<!–a textbox to write down annotations–>-->
<!--<!–<label>–>-->
<!--<!–Write the annotations separated by a ';':–>-->
<!--<!–<input–>-->
<!--<!–id="written_annotations"–>-->
<!--<!–type="text"–>-->
<!--<!–value="annotation x"–>-->
<!--<!–onkeypress="i2b2.MedCo.popupEnterPressed(event)">–>-->
<!--<!–</label>–>-->
<!--<div>-->
<!--<input type="button" value="Ok" onclick="i2b2.MedCo.popupOk()" style="float: left">-->
<!--<input type="button" value="Cancel" onclick="i2b2.MedCo.popupHide()" style="float: right">-->
<!--</div>-->
<!--</div>-->
<!--</div>-->
<!--</div>-->
<!--<!– –>-->
<input
type=
"button"
onclick=
"i2b2.MedCo.ctrlr.popups.ByGene.show(1);"
value=
"show gene popup"
/>
<input
type=
"button"
onclick=
"i2b2.MedCo.ctrlr.popups.ByVariantName.show(1);"
value=
"show variant name popup"
/>
<input
type=
"button"
onclick=
"tryPHP();"
value=
"check php"
/>
<input
type=
"button"
onclick=
"tryMedCoQuery();"
value=
"hardcoded query"
/>
<h2
class=
"medcoQryToolTitle"
>
Drop concepts here
</h2>
<div
class=
"medcoQryToolPanels"
>
<div>
<!--<div class="droptrgtlbl">Drop concepts here</div>-->
<div
id=
"medcoQryToolPanel1"
class=
"medcoQryToolPanel droptrgt SDX-PRS"
>
<p
id=
"panel1content"
>
</p>
</div>
<div
id=
"medcoQryToolPanel2"
class=
"medcoQryToolPanel droptrgt SDX-PRS"
>
<p
id=
"panel2content"
>
</p>
</div>
<div
id=
"medcoQryToolPanel3"
class=
"medcoQryToolPanel droptrgt SDX-PRS"
>
<p
id=
"panel3content"
>
</p>
</div>
<!--<!–Show chosen annotations–>-->
<!--<div style="background-color: aliceblue; height: 100%; " class="medcoQryToolPanel">-->
<!--<h3>Chosen annotations: </h3>-->
<!--<p id="chosen_annotations"> </p>-->
<!--<input type="button" value="Clear" onclick="i2b2.MedCo.Clear()">-->
<!--</div>-->
<!--<!– –>-->
</div>
</div>
<div>
<div
style=
"padding-top: 10px"
>
<div
class=
"MED-Buttons"
>
<div
class=
"runButton"
><a
href=
"JavaScript:i2b2.MedCo.ctrlr.run()"
>
Run Query
</a></div>
<div
class=
"resetButton"
><a
href=
"JavaScript:i2b2.MedCo.ctrlr.clear()"
>
Clear
</a></div>
</div>
<table
class=
"MED-resultTable"
>
<tbody>
<tr>
<td>
Number of patients
</td>
</tr>
<tr>
<td
id=
"MED-plainResult"
>
-
</td>
</tr>
</tbody>
</table>
<!--<div class="statusBox"><a href="JavaScript:i2b2.MedCo.ctrlr.queryStatus()">Query Status</a></div>-->
<!-- status info goes into lower status div in i2b2 -->
</div>
</div>
<pre
id=
"mylog"
style=
"overflow: scroll; width: 100%; height: 100%;"
>
</pre>
</div>
</div>
<!-- Genomic Annotations Attributes tab -->
<!--<div>-->
<!--<div id="byGene" style="disply:block;">-->
<!--<div class="label">Genomic Annotations Search</div>-->
<!--<input type="string" name="gene_input" id="gene_input" class="medco-input"/>-->
<!--</div>-->
<!--<div id="annotations_display">-->
<!--<!– dynamically inserted annotations text –>-->
<!--<!– TODO: autocompletion in text bow –>-->
<!--</div>-->
<!--</div>-->
<!-- Clinical Ontology Attributes tab -->
<!--<div>-->
<!--<div id="secure_ontology_selector">-->
<!--<!– dynamically inserted ontology query builder –>-->
<!--</div>-->
<!--</div>-->
<!-- Plugin Help tab -->
<div>
<div
class=
"MedCo-MainContent"
>
<div
class=
"MedCo-MainContentPad"
>
</div>
</div>
</div>
<!-- gene popup -->
<div
id=
"MedCo_genePopup"
style=
"visibility: collapse;"
>
<div
class=
"hd"
>
Search by Gene
</div>
<div
class=
"bd"
>
<p>
Use the gene name box to specify the variant for which to search. When you
begin typing in the search box below, the dropdown list will be populated with
some matching options. Regular expressions are accepted.
</p>
<table
class=
"MedCo_popupTable"
>
<tr>
<th>
Gene Name*
</th>
<td>
<input
type=
"search"
id=
"searchGeneInputBox"
>
</td>
<td>
<!-- todo I should update too when the user clicks the already selected option -->
<select
id=
"geneList"
onchange=
"
document.querySelector('#searchGeneInputBox').value = this.options[this.selectedIndex].text;"
>
</select>
</td>
</tr>
<tr>
<th>
Zygosity*
</th>
<td
colspan=
"2"
>
<div
id=
"zygosityListGenePopup"
>
<label><input
type=
"checkbox"
id=
"heterozygousGenePopup"
>
Heterozygous
</label>
<label><input
type=
"checkbox"
id=
"homozygousGenePopup"
>
Homozygous
</label>
<label><input
type=
"checkbox"
id=
"unknownGenePopup"
>
Unknown
</label>
</div>
</td>
</tr>
</table>
</div>
</div>
<!-- -->
<!-- variant name popup -->
<div
id=
"MedCo_variantNamePopup"
style=
"visibility: collapse;"
>
<div
class=
"hd"
>
Search by variant name
</div>
<div
class=
"bd"
>
<p>
Use the variant name box to specify the variant for which to search. When you
begin typing in the search box below, the dropdown list will be populated with
some matching options. Regular expressions are accepted.
</p>
<table
class=
"MedCo_popupTable"
>
<tr>
<th>
Variant Name*
</th>
<td>
<input
type=
"search"
id=
"searchVariantNameInputBox"
>
</td>
<td>
<!-- todo I should update too when the user clicks the already selected option -->
<select
id=
"variantNameList"
onchange=
"
document.querySelector('#searchVariantNameInputBox').value = this.options[this.selectedIndex].text;"
>
</select>
</td>
</tr>
<tr>
<th>
Zygosity*
</th>
<td
colspan=
"2"
>
<div
id=
"zygosityListVariantNamePopup"
>
<label><input
type=
"checkbox"
id=
"heterozygousVariantNamePopup"
>
Heterozygous
</label>
<label><input
type=
"checkbox"
id=
"homozygousVariantNamePopup"
>
Homozygous
</label>
<label><input
type=
"checkbox"
id=
"unknownVariantNamePopup"
>
Unknown
</label>
</div>
</td>
</tr>
</table>
</div>
</div>
<!-- -->
</div>
</div>
</div>
</body>
</html>
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