getVariants.php
No OneTemporary
Actions

Subscribers

None

File Metadata

	<?php

	//select variant_id
	//from shrine_ont.genomic_annotations
	//where variant_annotations ->> 'Start_Position' = '5239176'

	$conn = pg_connect("host=localhost port=5432 dbname=i2b2 user=postgres password=admin");

	if (!$conn) {
	echo "Error while connecting to the postgres database";
	exit;
	}

	// get the row which contains all the values of the passed annotation
	$query =
	"SELECT variant_id
	FROM shrine_ont.genomic_annotations
	WHERE variant_annotations ->> '". htmlspecialchars($_GET["annotation_name"]) . "' = '" . htmlspecialchars($_GET["annotation_value"]) ."'";

	$result = pg_query($conn, $query);
	if (!$result) {
	echo "An error occurred.\n";
	exit;
	}

	// In json format return both the panel number and the list of variants
	echo "{ \"panel_number\" :" . $_GET["panel_number"] . ", \"variants\" : ";
	$variantList = "";
	while ($row = pg_fetch_row($result)) {
	$variantList .= "\"$row[0]\",";
	}
	// drop the last comma
	echo "[" . substr($variantList, 0, -1) . "]}";