Diffusion Motion correction paper (master)
Recent Commits
Recent Commits
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| 6862d18c2c4d | aymanns | for mac | Jun 24 2018 | ||||
| d373ff55171c | aymanns | removed .m from gitignore | Apr 30 2018 | ||||
| d082bec21dd8 | aymanns | moved lamda and gamma to json | Apr 30 2018 | ||||
| 3876c32ff3a7 | aymanns | update | Apr 30 2018 | ||||
| 5b22e434b4a9 | aymanns | fix wrong name of tdTom file | Apr 27 2018 | ||||
| c63e9d46b588 | aymanns | fixed yellow unregistered panel | Apr 27 2018 | ||||
| 497030a84af2 | aymanns | run and json files for three more experiments | Apr 26 2018 | ||||
| 4583e59708e8 | aymanns | reduced time for 200frames to 10min | Apr 25 2018 | ||||
| 98d639f7a2e3 | aymanns | parallelized preprocessing and moved json specification to pipeline.run | Apr 18 2018 | ||||
| 5acb45c9dcb6 | aymanns | fixed difference in brighness | Apr 17 2018 | ||||
| a073f8747d03 | aymanns | removed extra slices | Apr 16 2018 | ||||
| 3e35ee179701 | aymanns | pipeline ready for data analysis | Apr 16 2018 | ||||
| 1ee37a48d7fe | aymanns | revert master branch to original release code | Apr 16 2018 | ||||
| a19ef641815e | aymanns | for the moment last commit for translation to python | Apr 16 2018 | ||||
| ff9f520a76c9 | aymanns | use matlab parts in of_l1_l2_fm_admm | Mar 16 2018 |
README.rtf
README.rtf
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\f0\fs24 \cf0 #### Description\
\
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\cf0 This directory contains the source code of the motion compensation algorithm described in the article \'93Imaging neural activity in the ventral nerve cord of behaving adult Drosophila\'94 by C. L. Chen, L. Hermans, M. C. Viswanathan, D. Fortun, M. Unser, A. Cammarato, M. H. Dickinson and P. Ramdya. The code is only for scientific or personal use.\
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
\cf0 \
#### How to use\
\
- Install the MIJ library (http://bigwww.epfl.ch/sage/soft/mij/): copy the files \'93ij.jar\'94 and \'93mij.jar\'94 in the java folder of MATLAB (should be <path-to-Matlab>/java/jar).\
- Edit \'93setPath.m\'94: set the paths of the MIJ library\
- Run \'93setPath.m\'94\
- Edit \'93test.m\'94, Section \'93Input - Output\'94\
- Run \'93test.m\'94\
}
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\f0\fs24 \cf0 #### Description\
\
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
\cf0 This directory contains the source code of the motion compensation algorithm described in the article \'93Imaging neural activity in the ventral nerve cord of behaving adult Drosophila\'94 by C. L. Chen, L. Hermans, M. C. Viswanathan, D. Fortun, M. Unser, A. Cammarato, M. H. Dickinson and P. Ramdya. The code is only for scientific or personal use.\
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
\cf0 \
#### How to use\
\
- Install the MIJ library (http://bigwww.epfl.ch/sage/soft/mij/): copy the files \'93ij.jar\'94 and \'93mij.jar\'94 in the java folder of MATLAB (should be <path-to-Matlab>/java/jar).\
- Edit \'93setPath.m\'94: set the paths of the MIJ library\
- Run \'93setPath.m\'94\
- Edit \'93test.m\'94, Section \'93Input - Output\'94\
- Run \'93test.m\'94\
}
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