R6289/motion_metric_test.m
678da7fa12b2workstation

motion_metric_test.m
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			fnIJ='/Applications/MATLAB_R2016a.app/java/jar/ij.jar'; % Path to "ij.jar"
			fnMIJ='/Applications/MATLAB_R2016a.app/java/jar/mij.jar'; % Path to "mij.jar"
			javaaddpath(fnIJ);
			javaaddpath(fnMIJ);
			addpath('code');
			addpath('code/external/utils');
			addpath(genpath('code/external/InvPbLib'));

			seq_unregistered = mijread_stack('/Users/florianaymanns/PhD/Data_R57C10s/4_170609_fly1_001/tdTom.tif');
			seq_registered = mijread_stack('/Users/florianaymanns/PhD/Registration/results_cluster/4_170609_fly1_001/warped2.tif');

			[cY_unregistered, mY_unregistered, ng_unregistered] = motion_metrics(seq_unregistered);
			[cY_registered, mY_registered, ng_registered] = motion_metrics(seq_registered);
			cY_unregistered
			cY_registered
			ng_unregistered
			ng_registered