Description

singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.

This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.

PyPi: https://pypi.python.org/pypi/singularity-pipeline/

Installing

pip install singularity-pipeline

Running

See usage instructions with

singularity-pipeline help