singularity-pipeline

Description

singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.

This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.

Source: https://github.com/kav2k/singularity-pipeline/

PyPi: https://pypi.python.org/pypi/singularity-pipeline/

Note that the script is still rough around the edges.

Installing

bash
pip install singularity-pipeline

Running

See usage instructions with

bash
singularity-pipeline help