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Decision Contr.} } @String { cec = {Chem.\ Eng.\ Commun.} } @String { ces = {Chem.\ Eng.\ Sci.} } @String { circuit = {IEEE Transactions on Circuits and Systems} } @String { ctaat = {CONTROL-THEORY AND ADVANCED TECHNOLOGY} } @String { ecc91 = {Proc.\ 1st European {Control} {Conference} ECC'91} } @String { ecc93 = {Proc.\ 2nd European {Control} {Conference} ECC'93} } @String { ecc95 = {Proc.\ 3rd European {Control} {Conference} ECC'95} } @String { ecc97 = {Proc.\ 4rd European {Control} {Conference} ECC'97} } @String { ejc = {Europ.\ J.\ Contr.} } @String { ieee = {IEEE Trans.\ Automat.\ Contr.} } @String { ieepartd = {IEE Proceedings, Part D} } @String { int = {Int.\ J.\ Contr.} } @String { jmsec = {Journal of Mathematical Systems, Estimation, and Control} } @String { jota = {J.\ Opt.\ Theory \ and Appl.} } @String { jpc = {J.\ Proc.\ Contr.} } @String { lett = {Syst.\ Contr.\ Lett.} } @String { linappl = {Lin. Alg. Apps.} } @String { magazin = {IEEE Contr.\ Syst.\ Magazine} } @String { mcss = {Mathematics of Control, Signals, and Systems} } @String { rnc = {Int.\ J.\ of Robust and Nonlinear Control} } @String { rt = {Regelungstechnik} } @String { siam = {SIAM J.\ Contr.\ Optim.} } @String { siam_o = {SIAM J.\ Contr.} } @String { siopt = {SIAM J.\ Optim.} } @String { zamm = {Z.\ angew.\ Math.\ Mech.} } @techreport{el2017general, title={General Proximal Gradient Method: A Case for Non-Euclidean Norms}, author={El Halabi, Marwa and Hsieh, Ya-Ping and Vu, Bang and Nguyen, Quang and Cevher, Volkan}, year={2017} } @inproceedings{kelner2014almost, title={An almost-linear-time algorithm for approximate max flow in undirected graphs, and its multicommodity generalizations}, author={Kelner, Jonathan A and Lee, Yin Tat and Orecchia, Lorenzo and Sidford, Aaron}, booktitle={Proceedings of the twenty-fifth annual ACM-SIAM symposium on Discrete algorithms}, pages={217--226}, year={2014}, organization={SIAM} } @conference{hassani2017gradient, title={Gradient Methods for Submodular Maximization}, author={Hassani, Hamed and Soltanolkotabi, Mahdi and Karbasi, Amin}, booktitle={Conference on Neural Information Processing Systems (NIPS)}, note={Available at \url{https://arxiv.org/abs/1708.03949}}, year={2017} } @article{attouch2010proximal, title={Proximal alternating minimization and projection methods for nonconvex problems: An approach based on the Kurdyka-Lojasiewicz inequality}, author={Attouch, H{\'e}dy and Bolte, J{\'e}r{\^o}me and Redont, Patrick and Soubeyran, Antoine}, journal={Mathematics of Operations Research}, volume={35}, number={2}, pages={438--457}, year={2010}, publisher={INFORMS} } @InProceedings{Argyriou2008a, Title = {An Algorithm for Transfer Learning in a Heterogeneous Environment}, Author = {Andreas Argyriou and Andreas Maurer and Massimiliano Pontil}, Booktitle = {Proc. Eur. Conf. Mach. Learn. and Know. Disc. in Databases}, Year = {2008}, Organization = {Springer}, Pages = {71-85}, Bibsource = {DBLP, http://dblp.uni-trier.de}, Crossref = {DBLP:conf/pkdd/2008-1}, Ee = {http://dx.doi.org/10.1007/978-3-540-87479-9_23}, File = {:Statistical Learning/Multitask/pontil08transferlearning.pdf:PDF}, Owner = {baldazen}, Timestamp = {2009.01.28} } @InProceedings{Micchelli2004, Title = {Kernels for Multi-task Learning}, Author = {Charles A. Micchelli and Massimiliano Pontil}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2004}, Bibsource = {DBLP, http://dblp.uni-trier.de}, Crossref = {DBLP:conf/nips/2004}, Ee = {http://books.nips.cc/papers/files/nips17/NIPS2004_0809.pdf}, File = {micchelli04kernels.pdf:Statistical Learning/Multitask/micchelli04kernels.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.02.29} } @InProceedings{Shivaswamy2008, Title = {Relative Margin Machines}, Author = {Pannagadatta K. Shivaswamy and Tony Jebara}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2008}, Editor = {Daphne Koller and Dale Schuurmans and Yoshua Bengio and Léon Bottou}, Pages = {1481-1488}, Publisher = {MIT Press}, Biburl = {http://www.bibsonomy.org/bibtex/2934d5e4c34becb6ad9f400767e829d0d/dblp}, Crossref = {conf/nips/2008}, Date = {2009-04-15}, Description = {dblp}, Ee = {http://books.nips.cc/papers/files/nips21/NIPS2008_0839.pdf}, File = {shivaswamy2008relative.pdf:Statistical Learning/EBB/shivaswamy2008relative.pdf:PDF}, Interhash = {e3e871a996a7cf734a247efd838a9487}, Intrahash = {934d5e4c34becb6ad9f400767e829d0d}, Keywords = {dblp}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://dblp.uni-trier.de/db/conf/nips/nips2008.html#ShivaswamyJ08} } @Article{dAspremont2008, Title = {Optimal Solutions for Sparse Principal Component Analysis}, Author = {d'Aspremont, Alexandre and Bach, Francis and Ghaoui, Laurent El}, Journal = {J. Mach. Learn. Res.}, Year = {2008}, Pages = {1269--1294}, Volume = {9}, Address = {Cambridge, MA, USA}, File = {aspremont08OptSPCA.pdf:Statistical Learning\\SPARSITY\\aspremont08OptSPCA.pdf:PDF}, ISSN = {1533-7928}, Owner = {baldassarre}, Publisher = {MIT Press}, Timestamp = {2009.05.22} } @Article{Abbeloos2011, Title = {Nested multigrid methods for time-periodic, parabolic optimal control problems}, Author = {Abbeloos, Dirk and Diehl, Moritz and Hinze, Michael and Vandewalle, Stefan}, Journal = {Comp. Visualiz. in Sci.}, Year = {2011}, Note = {10.1007/s00791-011-0158-4}, Pages = {27-38}, Volume = {14}, Affiliation = {Department of Computer science, K. U. Leuven, Celestijnenlaan 200, 3001 Heverlee, Belgium}, File = {Abbeloos2011.pdf:Abbeloos2011.pdf:PDF}, ISSN = {1432-9360}, Issue = {1}, Keyword = {Engineering}, Owner = {quoctd}, Publisher = {Springer Berlin / Heidelberg}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/s00791-011-0158-4} } @Article{Abbott2007, Title = {Thinning Out Redundant Empirical Data}, Author = {John Abbott and Claudia Fassino and Maria-Laura Torrente}, Year = {2007}, File = {Abbott07Thinning.pdf:Statistical Learning/Abbott07Thinning.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.21} } @InBook{Abdi2003, Title = {Encyclopedia for research methods for the social sciences}, Author = {Herve' Abdi}, Chapter = {Partial least squares regression (PLS-regression)}, Editor = {Lewis-Beck, M. and Bryman, A. and Futing, F.}, Pages = {792-795}, Publisher = {Thousand Oaks (CA): Sage}, Year = {2003}, File = {abdi03pls.pdf:Statistical Learning/abdi03pls.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.06.18} } @TechReport{Abel1995, Title = {{V}ergleich konventioneller und pr\"adiktiver {R}egelung am {B}eispiel eines absatzweise betriebenen {R}eaktors}, Author = {Abel, O. and Daszkowski, T. and Marquardt, W.}, Institution = {Lehrstuhl f\"ur Prozesstechnik, RWTH Aachen}, Year = {1995}, Number = {1995-07}, Keywords = {chemistry NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Abernethy2009, Title = {A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization}, Author = {Abernethy, J. and Bach,F. and Evgeniou, T. and Vert, J.-P.}, Journal = {J. Mach. Learn. Res.}, Year = {2009}, Pages = {803-826}, Volume = {10}, File = {:Statistical Learning/abernethy09a.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2009.07.15} } @InProceedings{Abernethy2007, Title = {Multitask learning with expert advice}, Author = {Abernethy, J. and Bartlett, P. and Rakhlin, A.}, Booktitle = {Proc. Annual Conf. Learn. Theory}, Year = {2007}, Organization = {Springer-Verlag}, Pages = {484--498}, File = {abernethy2007multitask.pdf:Statistical Learning/Multitask/abernethy2007multitask.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Adamczak2011, Title = {Sharp bounds on the rate of convergence of the empirical covariance matrix}, Author = {Adamczak, Rados{\l}aw and Litvak, Alexander E. and Pajor, Alain and Tomczak-Jaegermann, Nicole}, Journal = {C. R. Acad. Sci. Paris, Ser. I}, Year = {2011}, Pages = {195--200}, Volume = {349}, Owner = {yhli}, Timestamp = {2014.08.19} } @Unpublished{Adcock2013, Title = {Breaking the coherence barrier: A new theory for compressed sensing}, Author = {Ben Adcock and Anders C. Hansen and Clarice Poon and Bogdan Roman}, Note = {http://arxiv.org/abs/1302.0561}, Month = {Feb.}, Year = {2013}, Owner = {jms265}, Timestamp = {2014.08.18} } @Article{Adcock2013a, Title = {Breaking the coherence barrier: asymptotic incoherence and asymptotic sparsity in compressed sensing}, Author = {Adcock, Ben and Hansen, Anders C and Poon, Clarice and Roman, Bogdan}, Journal = {preprint}, Year = {2013}, File = {adcock2013breaking.pdf:adcock2013breaking.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Agarwal2011, Title = {A reliable effective terascale linear learning system}, Author = {Agarwal, Alekh and Chapelle, Olivier and Dud{\'\i}k, Miroslav and Langford, John}, Journal = {arXiv preprint arXiv:1110.4198}, Year = {2011}, File = {agarwal2011reliable.pdf:agarwal2011reliable.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Agarwal2010, Title = {Learning Multiple Tasks Using Manifold Regularization}, Author = {Agarwal, A. and Daume' III, H. and Gerber, S.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2010}, File = {agarwal2010learning.pdf:Statistical Learning\\Multitask\\agarwal2010learning.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2011.02.16} } @Misc{Aggarwal2004, Title = {A system identification approach for video-based face recognition}, Author = {G. Aggarwal and A. Roy-Chowdhury and R. Chellappa}, Year = {2004}, File = {Aggarwal04SystemVideoFaceRecognition.pdf:VC/Aggarwal04SystemVideoFaceRecognition.pdf:PDF}, Owner = {jmscarlett}, Text = {G. Aggarwal, A. Roy-Chowdhury, and R. Chellappa. A system identification approach for video-based face recognition. Internation Conference on Pattern Recognition, Cambridge, UK, August 2004.}, Timestamp = {2014.11.25}, Url = {citeseer.ist.psu.edu/aggarwal04system.html} } @InProceedings{Ahn2012, Title = {Graph sketches: sparsification, spanners, and subgraphs}, Author = {Ahn, Kook Jin and Guha, Sudipto and McGregor, Andrew}, Booktitle = {Proc. Symp. Principles of Database Systems}, Year = {2012}, Organization = {ACM}, Pages = {5--14}, File = {ahn2012graph.pdf:COMPRESSIVE SENSING/ahn2012graph.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Aiolli2005, Title = {Multiclass Classification with Multi-Prototype Support Vector Machines}, Author = {Fabio Aiolli and Alessandro Sperduti}, Journal = {J. Mach. Learn. Res.}, Year = {2005}, Pages = {817–850}, Volume = {6}, File = {Aiolli05MultiPrototypeSVM.pdf:Statistical Learning/Multiclass/Aiolli05MultiPrototypeSVM.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.27} } @InProceedings{Akaike1973, Title = {Information theory and extension of the maximum likelihood principle}, Author = {Akaike, Hirotogu}, Booktitle = {IEEE Int. Symp. Inf. Theory}, Year = {1973}, Address = {Budapest}, Editor = {Petrov, B. N. and Caski, F.}, Pages = {267--281}, Publisher = {Akademiai Kiado}, Owner = {yhli}, Timestamp = {2014.07.07} } @Unpublished{Aksoylar2013, Title = {Sparse Signal Processing with Linear and Non-Linear Observations: A Unified {S}hannon Theoretic Approach}, Author = {Cem Aksoylar and George Atia and Venkatesh Saligrama}, Note = {http://arxiv.org/abs/1304.0682}, Month = {April}, Year = {2013}, Owner = {Jono}, Timestamp = {2014.08.21} } @Article{Alamo2008, Title = {A set-membership state estimation algorithm based on DC programming}, Author = {T. Alamo and J.M. Bravo and M.J. Redondo and E.F. Camacho}, Journal = {Automatica}, Year = {2008}, Number = {1}, Pages = {216--224}, Volume = {44}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Book{Alber2006, Title = {Nonlinear ill-posed problems of monotone type}, Author = {Alber, Yakov and Ryazantseva, Irina}, Publisher = {Springer}, Year = {2006}, Address = {Dordrecht}, Owner = {yhli}, Timestamp = {2014.04.11} } @Article{Alber1998, Title = {On the projected subgradient method for nonsmooth convex optimization in a Hilbert space}, Author = {Ya. I. Alber and Alfredo N. Iusem and Mikhail V. Solodov}, Journal = {Math. Prog.}, Year = {1998}, Pages = {23--35}, Volume = {81}, Doi = {10.1007/BF01584842}, File = {alber1997.pdf:Optimization\\alber1997.pdf:PDF}, Masid = {2154623}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Albersmeyer2008, Title = {{S}ensitivity {G}eneration in an {A}daptive {BDF}-{M}ethod}, Author = {J. Albersmeyer and H.G. Bock}, Booktitle = {Modeling, Sim. and Opt. of Complex Processes}, Year = {2008}, Editor = {H.G. Bock and E. Kostina and X.H. Phu and R. Rannacher}, Pages = {15--24}, Publisher = {{S}pringer}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Alberts2002, Title = {{M}olecular {B}iology of the {C}ell}, Author = {B. Alberts and A. Johnson and J. Lewis and M. Raff and Keith Roberts and Peter Walter}, Publisher = {Garland Science}, Year = {2002}, Address = {New York}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Conference{Aldrich2005, Title = {Time-energy optimal control of hyper-actuated mechanical systems with geometric path constraints}, Author = {J.B. Aldrich and R.E. Skelton}, Booktitle = {Decision and Control and 2005 European Control Conference}, Year = {2005}, Month = {December}, Pages = {8246--8253}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Alessandri2008, Title = {Moving-horizon state estimation for nonlinear discrete-time systems: New stability results and approximation schemes}, Author = {A. Alessandri and M. Baglietto and G. Battistelli}, Journal = {Automatica}, Year = {2008}, Number = {7}, Pages = {1753 - 1765}, Volume = {44}, Doi = {10.1016/j.automatica.2007.11.020}, File = {:Alessandri2008.pdf:PDF}, ISSN = {0005-1098}, Keywords = {State estimation}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0005109807004888} } @Article{Alessandri2010, Title = {Advances in moving horizon estimation for nonlinear systems}, Author = {A. Alessandri and M. Baglietto and G. Battistelli and V.Zavala}, Journal = {IEEE Conf. Decision and Control}, Year = {2010}, Month = {dec.}, Pages = {5681-- 5688}, Booktitle = {Decision and Control (CDC), 2010 49th IEEE Conference on}, Doi = {10.1109/CDC.2010.5718126}, File = {:Alessandri2010.pdf:PDF}, ISSN = {0743-1546}, Keywords = {dynamic system;estimation cost function minimization;moving horizon estimation;nonlinear programming sensitivity calculations;nonlinear systems;observability conditions;sliding window;stability analysis;weight matrix;nonlinear programming;nonlinear systems;observability;}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Alexandre2008, Title = {First-order methods for sparse covariance selection}, Author = {d'A. Alexandre and B. Onureena and E.G. Laurent}, Journal = {SIAM J. Matrix Anal. App.}, Year = {2008}, Number = {1}, Pages = {56--66}, Volume = {30}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Allen-Zhu2014, Title = {A novel, simple interpretation of {N}esterov's accelerated method as a combination of gradient and mirror descent}, Author = {Allen-Zhu, Zeyuan and Orecchia, Lorenzo}, Year = {2014}, Note = {arXiv:1407.1537v1 [cs.DS]}, Owner = {yhli}, Timestamp = {2014.07.24} } @InCollection{Allgoewer1999, Title = {{N}onlinear {P}redictive {C}ontrol and {M}oving {H}orizon {E}stimation -- {An} {I}ntroductory {O}verview}, Author = {Allg\"ower, F. and Badgwell, T.A. and Qin, J.S. and Rawlings, J.B. and Wright, S.J.}, Booktitle = {Advances in Control, Highlights of {ECC'99}}, Publisher = {Springer}, Year = {1999}, Editor = {P. M. Frank}, Pages = {391--449}, Keywords = {NMPC optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Allgoewer2000, Title = {{E}fficient {N}onlinear {M}odel {P}redictive {C}ontrol for {L}arge {S}cale {C}onstrained {P}rocesses}, Author = {Allg\"ower, F. and Findeisen, R. and Nagy, Z. and Diehl, M. and Bock, H.G. and Schl\"oder, J.P.}, Booktitle = {Proc. Int. Conf. Methods and Models in Automation and Robotics}, Year = {2000}, Pages = {43--54}, Publisher = {Miedzyzdroje, Poland}, In = {S. Domek, R. Kaszynski}, Keywords = {NMPC optimal control optimal control NMPC agbock}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Allgoewer2000a, Title = {{N}onlinear {P}redictive {C}ontrol}, Author = {F. Allg\"ower and A. Zheng}, Publisher = {Birkh\"auser}, Year = {2000}, Address = {Basel Boston Berlin}, Series = {Progress in Systems Theory}, Volume = {26}, Key = {ISBN 3-7643-6297-9}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Allgower1992, Title = {Continuation and path-following}, Author = {E. Allgower and K. Georg}, Journal = {Acta Numer.}, Year = {1992}, Pages = {1--64}, Volume = {2}, Owner = {quoctd}, Timestamp = {2014.06.21} } @TechReport{Alvarez2011, Title = {Kernels for Vector-Valued Functions: a Review}, Author = {Mauricio A. Alvarez and Lorenzo Rosasco, and Neil D. Lawrence}, Institution = {MIT-CSAIL}, Year = {2011}, File = {alvarez2011kernels.pdf:Statistical Learning/Vector-valued/alvarez2011kernels.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2012.01.09} } @InProceedings{Alvarez2009, Title = {Latent Force Models}, Author = {Alvarez, M. and Luengo, D. and Lawrence, N.}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2009}, Pages = {9-16}, Volume = {5}, File = {:Statistical Learning/Multitask/alvarez09latentforcemodels.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2009.09.30} } @Article{Amaldi1998, Title = {On the Approximability of Minimizing Nonzero Variables or Unsatisfied Relations in Linear Systems}, Author = {Edoardo Amaldi and Viggo Kann}, Journal = {Theor. Comput. Sci.}, Year = {1998}, Number = {1-2}, Pages = {237-260}, Volume = {209}, Bibsource = {DBLP, http://dblp.uni-trier.de}, Ee = {http://dx.doi.org/10.1016/S0304-3975(97)00115-1}, File = {amaldi98approx.pdf:Statistical Learning\\SPARSITY\\amaldi98approx.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.09.03} } @Book{Amann1983, Title = {{G}ew\"ohnliche {D}ifferentialgleichungen}, Author = {Amann, H.}, Publisher = {de Gruyter}, Year = {1983}, Address = {Berlin; New York}, Keywords = {ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Amann2002, Title = {{A}nalysis {I}}, Author = {H. Amann and J. Escher}, Publisher = {Birkh\"auser}, Year = {2002}, Address = {Basel Boston Berlin}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Amelunxen2014, Title = {Living on the edge: Phase transitions in convex programs with random data}, Author = {Amelunxen, Dennis and Lotz, Martin and McCoy, Michael B. and Tropp, Joel A.}, Journal = {Information and Inference}, Year = {2014}, Note = {arXiv:1303.6672v2 [cs.IT]}, Pages = {224--294}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.07.18} } @Article{Amini2011, Title = {Compressibility of deterministic and random infinite sequences}, Author = {Amini, Arash and Unser, Michael and Marvasti, Farokh}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2011}, Number = {11}, Pages = {5193--5201}, Volume = {59}, Owner = {yhli}, Timestamp = {2014.11.11} } @Conference{Amit2007, Title = {Uncovering shared structures in multiclass classification}, Author = {Amit, Y. and Fink, M. and Srebro, N. and Ullman, S.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2007}, Organization = {ACM}, Pages = {17--24}, File = {amit2007uncovering.pdf:Statistical Learning\\Multitask\\amit2007uncovering.pdf:PDF}, Keywords = {sparsity, regularization, multitask, multiclass}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Anandkumar2012, Title = {Tensor decompositions for learning latent variable models}, Author = {Anandkumar, Anima and Ge, Rong and Hsu, Daniel and Kakade, Sham M and Telgarsky, Matus}, Journal = {arXiv preprint arXiv:1210.7559}, Year = {2012}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Andersen2011, Title = {Interior-point methods for large-scale cone programming}, Author = {M. S. Andersen and J. Dahl and Z. Liu and L. Vandenberghe}, Journal = {.In: S. Sra, S. Nowozin, S. J. Wright (Editors) Optimization for Machine Learning, MIT Press}, Year = {2011}, Pages = {55--83}, Owner = {quoctd}, Timestamp = {2013.09.26} } @Book{Anderson1995, Title = {{L}apack {U}sers' {G}uide}, Author = {E. Anderson and Z. Bai and C. Bischof and J.W. Demmel and J.J. Dongarra and J. Du Croz and A. Greenbaum and S. Hammarling and A. McKenney and S. Ostrouchov and D. Sorensen}, Publisher = {{SIAM}}, Year = {1995}, Address = {Philadelphia}, Edition = {2nd Edition}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Anderson1987, Title = {Generation of random orthogonal matrices}, Author = {Anderson, T. W. and Olkin, I. and Underhill, L. G.}, Journal = {SIAM J. Sci. Stat. Comp.}, Year = {1987}, Number = {4}, Pages = {625--629}, Volume = {8}, Owner = {yhli}, Timestamp = {2014.07.22} } @InProceedings{Andersson2011, Title = {Integration of {CasADi} and {JModelica.org}}, Author = {J. Andersson and J. {\AA}kesson and F. Casella and M. Diehl}, Booktitle = {8th International Modelica Conference}, Year = {2011}, File = {Andersson2011.pdf:Andersson2011.pdf:PDF}, Owner = {joel}, Timestamp = {2012.02.29} } @InProceedings{Andersson2012, Title = {{CasADi} -- {A} symbolic package for automatic differentiation and optimal control}, Author = {J. Andersson and J. {\AA}kesson and M. Diehl}, Booktitle = {Recent Advances in Algorithmic Differentiation}, Year = {2012}, Address = {Berlin}, Editor = {S. Forth and P. Hovland and E. Phipps and J. Utke and A. Walther}, Publisher = {Springer}, Series = {{L}ecture {N}otes in {C}omputational {S}cience and {E}ngineering}, File = {Andersson2012.pdf:Andersson2012.pdf:PDF}, Owner = {joel}, Timestamp = {2012.02.28} } @Article{Andreani2013, Title = {A {G}auss–{N}ewton approach for solving constrained optimization problems using differentiable exact penalties}, Author = {R. Andreani and E.H. Fukuda and P.J.S. Silva}, Journal = {J. Opt. Theory and Apps.}, Year = {2013}, Pages = {1--33}, Volume = {xx}, File = {:Papers/Andreani2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Book{Andreasson2006, Title = {Introduction to Continuous Optimization: Foundations and Fundamental Algorithms}, Author = {N. Andreasson and A. Evgrafov and M. Patriksson}, Publisher = {Studentlitteratur AB}, Year = {2006}, Owner = {quoctd}, Timestamp = {2014.04.08} } @Book{Andrews2000, Title = {{F}oundations of {M}ultithreaded, {P}arallel, and {D}istributed {P}rogramming}, Author = {G.R. Andrews}, Publisher = {Addison-Wesley}, Year = {2000}, Address = {University of Arizona}, Owner = {quoctd}, Timestamp = {2012.10.11} } @InProceedings{Angst2011, Title = {The generalized trace-norm and its application to structure-from-motion problems}, Author = {Angst, R. and Zach, C. and Pollefeys, M.}, Booktitle = {Computer Vision ICCV}, Year = {2011}, Organization = {IEEE}, Pages = {2502--2509}, File = {angst2011generalized.pdf:COMPUTER VISION\\angst2011generalized.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Anguita2004, Title = {A new method for multiclass support vector machines}, Author = {Anguita, D. and Ridella, S. and Sterpi, D.}, Booktitle = {Proc. IEEE International Joint Conference on Neural Networks}, Year = {2004}, Month = {25-29 July}, Volume = {1}, File = {anguita2004new.pdf:Statistical Learning\\Multiclass\\anguita2004new.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.27} } @Article{Anh2012, Title = {An {A}rmijo-type method for pseudomonotone equilibrium problems and its applications}, Author = {P.N. Anh and L.T.H. An}, Journal = {J. Global Opt.}, Year = {2012}, Pages = {1--18}, File = {:Papers/Anh2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Article{Anstreicher2012, Title = {On convex relaxations for quadratically constrained quadratic programming}, Author = {K. M. Anstreicher}, Journal = {Math. Program.}, Year = {2012}, Volume = {xx}, File = {:Papers/Anstreicher2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.01} } @Misc{Antsaklis1998, Title = {{O}n hybrid control of complex systems: {A} survey}, Author = {P. Antsaklis and X. Koutsoukos}, HowPublished = {In 3rd International Conference ADMP'98, Automation of Mixed Processes: Dynamic Hybrid Systems, pages 1--8, Reims, France, March 1998.}, Year = {1998}, File = {Antsaklis1998.pdf:Antsaklis1998.pdf:PDF}, Keywords = {hybrid}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Apkarian2000, Title = {Robust Control via Concave Minimization - Local and Global Algorithms}, Author = {Apkarian, P. and Tuan, H.D.}, Journal = {IEEE Trans. Aut. Control}, Year = {2000}, Number = {2}, Pages = {299--305}, Volume = {45}, Owner = {quoctd}, Timestamp = {2012.08.17} } @InProceedings{Apkarian1998, Title = {Robust control via concave optimization: local and global algorithms}, Author = {Apkarian, P. and Tuan, H.D.}, Booktitle = {Proc. IEEE Conference on Decision and Control}, Year = {1998}, Keywords = {optec}, Owner = {quoctd}, Timestamp = {2009.08.21} } @Book{Arfken2005, Title = {Mathematical methods for physicists}, Author = {Arfken, G. B. and Weber, H.-J.}, Publisher = {Elsevier}, Year = {2005}, Owner = {baldassarre}, Timestamp = {2010.02.04} } @Article{Argyriou2008, Title = {Convex multi-task feature learning}, Author = {Argyriou, A. and Evgeniou, T. and Pontil, M.}, Journal = {Mach. Learn.}, Year = {2008}, Number = {3}, Pages = {243--272}, Volume = {73}, Doi = {10.1007/s10994-007-5040-8}, File = {:Statistical Learning/Multitask/pae08convexmtl.pdf:PDF}, Owner = {baldazen}, Publisher = {Springer}, Timestamp = {2008.09.24} } @InProceedings{Argyriou2007, Title = {Multi-task feature learning}, Author = {Andreas Argyriou and Theodoros Evgeniou and Massimiliano Pontil}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2007}, Publisher = {MIT Press}, File = {:Statistical Learning/Multitask/argyriou07multitask.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.09.02} } @InProceedings{Argyriou2012, Title = {Sparse Prediction with the $ k $-Support Norm}, Author = {Argyriou, Andreas and Foygel, Rina and Srebro, Nathan}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2012}, Pages = {1457--1465}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Argyriou2006, Title = {Combining graph Laplacians for semi-supervised learning}, Author = {Argyriou, A. and Herbster, M. and Pontil, M.}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2006}, Pages = {67}, Volume = {18}, File = {argyriou2006combining.pdf:Statistical Learning\\Kernel Learning\\argyriou2006combining.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Citeseer}, Timestamp = {2014.11.25} } @Article{Argyriou2005, Title = {Learning convex combinations of continuously parameterized basic kernels}, Author = {Argyriou, A. and Micchelli, C.A. and Pontil, M.}, Journal = {Conf. Learning Theory}, Year = {2005}, Pages = {338--352}, File = {argyriou2005learning.pdf:Statistical Learning\\Kernel Learning\\argyriou2005learning.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Argyriou2011, Title = {Efficient first order methods for linear composite regularizers}, Author = {Argyriou, A. and Micchelli, C. and Pontil, M. and Shen, L. and Xu, Y.}, Journal = {arXiv preprint arXiv:1104.1436}, Year = {2011}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Argyriou2007a, Title = {A Spectral Regularization Framework for Multi-Task Structure Learning}, Author = {Argyriou, A. and Micchelli, C.A. and Pontil, M. and Ying, Y.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2007}, File = {argyriou07spectralmtl.pdf:Statistical Learning/Multitask/argyriou07spectralmtl.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Arlot2010, Title = {A survey of cross-validation procedures for model selection}, Author = {Arlot, Sylvain and Celisse, Alain}, Journal = {Stat. Surv.}, Year = {2010}, Pages = {40--79}, Volume = {4}, Owner = {yhli}, Timestamp = {2014.07.10} } @InProceedings{Arnold2007, Title = {Trajectory Tracking for Boom Cranes Based on Nonlinear Control and Optimal Trajectory Generation}, Author = {E. Arnold and J. Neupert and O. Sawodny and K. Schneider}, Booktitle = {IEEE Int. Conf. Control Apps.}, Year = {2007}, Pages = {1444--1449}, Doi = {10.1109/CCA.2007.4389439}, Keywords = {LIEBHERR harbor mobile crane;boom cranes;crane automation;load sway reduction;model-based optimal trajectory generation;nonlinear control;radial load movement;trajectory tracking;cranes;nonlinear control systems;position control;tracking;}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Aronszajn1950, Title = {Theory of Reproducing Kernels}, Author = {Aronszajn, N.}, Journal = {Trans. Amer. Math. Soc.}, Year = {1950}, Number = {3}, Pages = {337--404}, Volume = {68}, Copyright = {Copyright © 1950 American Mathematical Society}, ISSN = {00029947}, Jstor_articletype = {primary_article}, Jstor_formatteddate = {May, 1950}, Owner = {baldazen}, Publisher = {American Mathematical Society}, Timestamp = {2008.09.04}, Url = {http://www.jstor.org/stable/1990404} } @Book{Arora2009, Title = {Computational complexity: a modern approach}, Author = {Arora, Sanjeev and Barak, Boaz}, Publisher = {Cambridge University Press}, Year = {2009}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Arrow1958, Title = {Studies in linear and non-linear programming}, Author = {K. J. Arrow and L. Hurwicz and H. Uzawa}, Journal = {With contributions by H. B. Chenery, S. M. Johnson, S. Karlin, T. Marschak, R. M. Solow. Stanford Mathematical Studies in the Social Sciences, vol. II.}, Year = {1958}, Volume = {Stanford University Press, Stanford, Calif.}, Owner = {quoctd}, Timestamp = {2013.08.20} } @Book{Ascher1988, Title = {{N}umerical {S}olution of {B}oundary {V}alue {P}roblems for {D}ifferential {E}quations}, Author = {Ascher, U. and Mattheij, R. and Russell, R.D.}, Publisher = {Prentice Hall}, Year = {1988}, Address = {Engelwood Cliffs, NJ}, Keywords = {ODE collocation multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Ashburner2000, Title = {Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.}, Author = {M. Ashburner and C. A. Ball and J. A. Blake and D. Botstein and H. Butler and J. M. Cherry and A. P. Davis and K. Dolinski and S. S. Dwight and J. T. Eppig and M. A. Harris and D. P. Hill and L. Issel-Tarver and A. Kasarskis and S. Lewis and J. C. Matese and J. E. Richardson and M. Ringwald and G. M. Rubin and G. Sherlock}, Journal = {Nat Genet}, Year = {2000}, Month = {May}, Number = {1}, Pages = {25--29}, Volume = {25}, Doi = {10.1038/75556}, File = {GOcons00GOtools.pdf:/home/baldazen/Desktop/Scienza/BIO/GOcons00GOtools.pdf:PDF}, Keywords = {Animals; Computer Communication Networks; Databases, Factual; Eukaryotic Cells; Genes; Humans; Metaphysics; Mice; Molecular Biology; Sequence Analysis, DNA; Terminology}, Owner = {baldazen}, Pmid = {10802651}, Timestamp = {2007.10.15}, Url = {http://dx.doi.org/10.1038/75556} } @Article{Asplund1967, Title = {Positivity of duality mappings}, Author = {Asplund, Edgar}, Journal = {Bull. Amer. Math. Soc}, Year = {1967}, Number = {2}, Pages = {191--273}, Volume = {73}, Owner = {yhli}, Timestamp = {2014.04.16} } @Article{Assa2012, Title = {Hedging, pareto optimality and good deals}, Author = {H. Assa and K.M. Karai}, Journal = {J. Theory Opt. Apps.}, Year = {2012}, Pages = {1--18}, Volume = {xx}, File = {:Papers/Assa2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.13} } @Misc{Asuncion2007, Title = {{UCI} Machine Learning Repository}, Author = {Asuncion, A. and Newman, D.J.}, Year = {2007}, Institution = {University of California, Irvine, School of Information and Computer Sciences}, Owner = {baldazen}, Timestamp = {2008.09.24}, Url = {http://www.ics.uci.edu/$\sim$mlearn/{MLR}epository.html} } @Article{Atia2012, Title = {Boolean Compressed Sensing and Noisy Group Testing}, Author = {Atia, G.K. and Saligrama, V.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2012}, Month = {March}, Number = {3}, Pages = {1880-1901}, Volume = {58}, ISSN = {0018-9448}, Owner = {jmscarlett} } @Article{Attouch1996, Title = {A general duality principle for the sum of two operators}, Author = {Attouch, H. and Th{\'{e}}ra, M.}, Journal = {J. Convex Anal.}, Year = {1996}, Number = {1}, Pages = {1--24}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.08.26} } @Book{Aubin1991, Title = {Viability Theory}, Author = {J.P.~Aubin}, Publisher = {Birkh\"auser Boston}, Year = {1991}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Audibert2009, Title = {Exploration-exploitation tradeoff using variance estimates in multi-armed bandits}, Author = {Audibert, J.Y. and Munos, R. and Szepesv{\'a}ri, C.}, Journal = {Theoretical Computer Science}, Year = {2009}, Number = {19}, Pages = {1876--1902}, Volume = {410}, File = {audibert2009exploration.pdf:Statistical Learning/EBB/audibert2009exploration.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Conference{Audibert2007, Title = {Tuning Bandit Algorithms in Stochastic Environments}, Author = {Audibert, J.Y. and Munos, R. and Szepesv{\'a}ri, C.}, Booktitle = {Algorithmic Learning Theory}, Year = {2007}, Organization = {Springer}, Pages = {150--165}, File = {audibert2007tuning.pdf:Statistical Learning/EBB/audibert2007tuning.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Auslender2012, Title = {An extended sequential quadratically constrained quadratic programming algorithm for nonlinear, semidefinite and second-order cone programming}, Author = {A. Auslender}, Journal = {J. Opt. Theory and Apps.}, Year = {2012}, Pages = {1--30}, Volume = {xx}, File = {:Papers/Auslender2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.13} } @Article{Auslender2012a, Title = {A very simple {SQCQP} method for a class of smooth convex constrained minimization problems with nice convergence results}, Author = {A. Auslender}, Journal = {Math. Program.}, Year = {2012}, Pages = {1--21}, Volume = {xx}, File = {:Papers/Auslender2012a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Book{Auslender1976, Title = {{O}ptimisation: {M}\'{e}thodes {N}um\'{e}riques}, Author = {A. Auslender}, Publisher = {Masson}, Year = {1976}, Address = {Paris}, Owner = {quoctd}, Timestamp = {2014.04.02} } @Article{Auslender2006, Title = {Interior gradient and proximal methods for convex and conic optimization}, Author = {Auslender, Alfred and Teboulle, Marc}, Journal = {SIAM J. Opt.}, Year = {2006}, Number = {3}, Pages = {697--725}, Volume = {16}, Owner = {yhli}, Timestamp = {2014.11.06} } @TechReport{Averick1993, Title = {{C}omputing {L}arge {S}parse {J}acobian {M}atrices {U}sing {A}utomatic {D}ifferentiation}, Author = {Averick, B. M. and Mor{\'e}, J. J. and Bischof C. H.}, Institution = {Mathematics and Computer Science Division}, Year = {1993}, Address = {Argonne, IL}, Note = {Preprint MCS-P348-0193}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Aybat2012, Title = {A unified approach for minimizing composite norms}, Author = {N.S. Aybat and G. Iyengar}, Journal = {Math. Program.}, Year = {2012}, Pages = {1--46}, Volume = {xx}, File = {:Papers/Aybat2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.13} } @Article{Buehlmann2013, Title = {Statistical significance in high-dimensional linear models}, Author = {B\"{u}hlmann, Peter}, Journal = {Bernoulli}, Year = {2013}, Number = {4}, Pages = {1212--1242}, Volume = {19}, Owner = {yhli}, Timestamp = {2014.07.28} } @Book{Buehlmann2011, Title = {Statistics for High-Dimensional Data}, Author = {B\"{u}hlmann, Peter and van de Geer, Sara}, Publisher = {Springer}, Year = {2011}, Address = {Berlin}, Owner = {yhli}, Timestamp = {2014.01.21} } @Article{Buehlmann2002, Title = {Boosting with the l2 -loss: Regression and classification}, Author = {B\"uhlmann, P. and Yu, B.}, Journal = {J. Amer. Stat. Assoc.}, Year = { 2002 }, Pages = {324-340}, Volume = {98}, File = {:Statistical Learning/bulmann02boosting.ps:PostScript;bulmann02boosting.pdf:Statistical Learning/bulmann02boosting.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.02.08} } @MastersThesis{Buerner2002, Title = {{A}lgorithmen zur {L}\"osung von {O}ptimalsteuerungsproblemen bei der {S}ystemsch\"atzung in {E}chtzeit}, Author = {T. B\"urner}, School = {Universit\"at Heidelberg}, Year = {2002}, Keywords = {realtime}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bach2013a, Title = {Adaptivity of averaged stochastic gradient descent to local strong convexity for logistic regression}, Author = {F. Bach}, Year = {2013}, File = {:Papers/Bach2013a.pdf:PDF}, Institution = {HAL 00804431}, Owner = {quoctd}, Timestamp = {2012.11.05}, Type = {Tech. Report} } @Article{Bach2011, Title = {Learning with submodular functions: A convex optimization perspective}, Author = {Bach, Francis}, Journal = {arXiv preprint arXiv:1111.6453}, Year = {2011}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Bach2011b, Title = {Shaping Level Sets with Submodular Functions.}, Author = {Bach, F.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2011}, Pages = {10--18}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bach2010, Title = {Self-concordant analysis for logistic regression}, Author = {Bach, Francis}, Journal = {Elec. J. Stats.}, Year = {2010}, Pages = {384--414}, Volume = {4}, Owner = {yhli}, Timestamp = {2014.06.04} } @Article{Bach2010a, Title = {Convex Analysis and Optimization with Submodular Functions: a Tutorial}, Author = {Bach, F.}, Journal = {HAL Technical Report}, Year = {2010}, File = {bach2010convex.pdf:Statistical Learning/SPARSITY/bach2010convex.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2013.01.23} } @Article{Bach2010b, Title = {Structured sparsity-inducing norms through submodular functions}, Author = {Bach, Francis}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2010}, Pages = {118--126}, File = {bach2010structured.pdf:Statistical Learning\\SPARSITY\\bach2010structured.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bach2008a, Title = {Consistency of trace norm minimization}, Author = {Bach, F.R.}, Journal = {J. Mach. Learn. Res.}, Year = {2008}, Pages = {1019--1048}, Volume = {9}, File = {bach2008trace.pdf:Statistical Learning/MATRIX COMPLETION/bach2008trace.pdf:PDF}, Owner = {jmscarlett}, Publisher = {JMLR. org}, Timestamp = {2014.11.25} } @Article{Bach2008b, Title = {Consistency of the group Lasso and multiple kernel learning}, Author = {Bach, F.R.}, Journal = {J. Fourier Anal. and Apps.}, Year = {2008}, Pages = {1179--1225}, Volume = {9}, File = {bach2008consistency.pdf:Statistical Learning\\Kernel Learning\\bach2008consistency.pdf:PDF}, ISSN = {1532-4435}, Owner = {jmscarlett}, Publisher = {JMLR. org}, Timestamp = {2014.11.25} } @InBook{Bach2011a, Title = {Optimization for Machine Learning}, Author = {Bach, F. and Jenatton, R. and Mairal, J. and Obozinski, G.}, Chapter = {Convex optimization with sparsity-inducing norms}, Editor = {Sra, S. and Nowozin, S. and Wright, S.J.}, Pages = {19--54}, Publisher = {MIT Press}, Year = {2011}, Journal = {Optimization for Machine Learning}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bach2012, Title = {Optimization with sparsity-inducing penalties}, Author = {Bach, Francis and Jenatton, Rodolphe and Mairal, Julien and Obozinski, Guillaume}, Journal = {Found. Trends Mach. Learn.}, Year = {2012}, Number = {1}, Pages = {1--106}, Volume = {4}, Owner = {yhli}, Timestamp = {2014.09.05} } @TechReport{Bach2011c, Title = {Structured sparsity through convex optimization}, Author = {Bach, F. and Jenatton, R. and Mairal, j. and Obozinski, G.}, Institution = {Arxiv preprint:1109.2397}, Year = {2011}, File = {bach2011structured.pdf:Statistical Learning\\SPARSITY\\bach2011structured.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2012.01.12} } @InProceedings{Bach2004, Title = {Multiple kernel learning, conic duality, and the SMO algorithm}, Author = {Bach, F.R. and Lanckriet, G.R.G. and Jordan, M.I.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2004}, Organization = {ACM New York, NY, USA}, Owner = {baldassarre}, Timestamp = {2010.02.16} } @Unpublished{Bach2013, Title = {Non-strongly-convex smooth stochastic approximation with convergence rate ${O}(1/n)$}, Author = {Bach, Francis and Moulines, Eric}, Note = {hal-00831977, version 1}, Month = jan, Year = {2013}, Owner = {yhli}, Timestamp = {2014.04.02} } @InProceedings{Bach2008, Title = {{B}olasso: Model consistent {L}asso estimation throught the bootstrap}, Author = {Bach, Francis R.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2008}, Owner = {yhli}, Timestamp = {2014.07.11} } @InProceedings{Baes2009, Title = {{S}emidefinite representability of the trace of totally positive{L}aurent polynomial matrix functions}, Author = {M. Baes}, Booktitle = {Proc. Conf. Sci. Comp.}, Year = {2009}, Pages = {412--418}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Baes2007, Title = {{C}onvexity and differentiability properties of spectral functions and spectral mappings on {E}uclidean {J}ordan algebras}, Author = {M. Baes}, Journal = {Lin. Alg. Apps.}, Year = {2007}, Number = {2-3}, Pages = {664--700}, Volume = {422}, Owner = {quoctd}, Timestamp = {2013.08.23} } @PhdThesis{Baes2006, Title = {{S}pectral {F}unctions and {S}moothing {T}echniques in {J}ordan{A}lgebras}, Author = {M. Baes}, School = {Universit{\'e} Catholique de Louvain, Louvain-la-Neuve, Belgium}, Year = {2006}, Month = {September}, Keywords = {OPTEC-library}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Baes2012, Title = {Minimizing {L}ipschitz-continuous strongly convex functions over integer points in polytopes}, Author = {M. Baes and A. Del Pia and Y. Nesterov and S. Onn and R. Weismantel}, Journal = {Math. Program.}, Year = {2012}, Number = {1}, Pages = {305--322}, Volume = {134}, File = {:Papers/Baes2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Bagirov2013, Title = {Subgradient method for nonconvex nonsmooth optimization}, Author = {A.M. Bagirov and L. Jin and N. Karmitsa and A. Al Nuaimat and N. Sultanova}, Journal = {J. Opt. Theory and Apps.}, Year = {2013}, Pages = {1--20}, Volume = {xx}, File = {:Papers/Bagirov2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @InProceedings{Bah2014, Title = {Model-based Sketching and Recovery with Expanders}, Author = {Bah, B. and Baldassarre, L. and Cevher, V.}, Booktitle = {Proc. ACM-SIAM Symp. Disc. Alg.}, Year = {2014}, Number = {EPFL-CONF-187484}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Bajwa2007, Title = {Toeplitz-structured compressed sensing matrices}, Author = {Bajwa, Waheed U and Haupt, Jarvis D and Raz, Gil M and Wright, Stephen J and Nowak, Robert D}, Booktitle = {IEEE/SP Workshop Stat. Sig. Proc.}, Year = {2007}, Organization = {IEEE}, Pages = {294--298}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bakker2003, Title = {Task clustering and gating for bayesian multitask learning}, Author = {Bakker, B. and Heskes, T.}, Journal = {J. Mach. Learn. Res.}, Year = {2003}, Pages = {83--99}, Volume = {4}, Address = {Cambridge, MA, USA}, File = {bakker03mtl.pdf:Statistical Learning/Multitask/bakker03mtl.pdf:PDF}, ISSN = {1533-7928}, Owner = {baldassarre}, Publisher = {MIT Press}, Timestamp = {2009.04.14} } @Article{Balakrishnan2008, Title = {Asymptotic properties of the ratio of order statistics}, Author = {Balakrishnan, N and Stepanov, A}, Journal = {Statistics \& Probability Letters}, Year = {2008}, Number = {3}, Pages = {301--310}, Volume = {78}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @TechReport{Baldassarre2012a, Title = {A general framework for structured sparsity via proximal optimization}, Author = {L. Baldassarre}, Institution = {LIONS, EPFL, Switzerland}, Year = {2012}, Type = {Tech. Report}, File = {:Papers/Baldassarre2012b.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.05} } @PhdThesis{Baldassarre2010, Title = {Multi-Output Learning with Spectral Filters}, Author = {L. Baldassarre}, School = {Dipartimento di Fisica Universit\`{a} degli Studi di Genova}, Year = {2010}, Type = {PhD thesis}, File = {:Theses/Baldassarre2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.05} } @InProceedings{Baldassarre2008, Title = {Vector valued regression for iron overload estimation}, Author = {Baldassarre, L. and Barla, A. and Gianesin, B. and Marinelli, M.}, Booktitle = {Int. Conf. Pattern Recog.}, Year = {2008}, Month = {Dec.}, Doi = {10.1109/ICPR.2008.4761759}, File = {:Statistical Learning/Vector-valued/baldassarre08vvr.pdf:PDF}, ISSN = {1051-4651}, Keywords = {biology computing, regression analysisanthropometric characteristics, body-iron burden, body-iron overload, iron overload estimation, magnetic iron detector, magnetic track, non-invasive assessment, scalar-valued regression task, vector valued regression, vector-valued feature map, vector-valued function}, Owner = {baldassarre}, Timestamp = {2009.07.01} } @InProceedings{Baldassarre2010a, Title = {Learning how to grasp objects}, Author = {Baldassarre, L. and Barla, A. and Noceti, N. and Odone, F.}, Booktitle = {Proc. European Symp. Art. Neural Networks}, Year = {2010}, Owner = {baldassarre}, Timestamp = {2010.01.21} } @Article{Baldassarre2013, Title = {Group-Sparse Model Selection: Hardness and Relaxations}, Author = {Baldassarre, L. and Bhan, N. and Cevher, V. and Kyrillidis, A.}, Journal = {arXiv preprint arXiv:1303.3207}, Year = {2013}, File = {:WORK/2012 - LIONS - PERSONAL SVN/trunk/STRUCTURED SPARSITY/IEEE TRANS IT/GroupSparse-IT.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Baldassarre2012b, Title = {A general framework for structured sparsity via proximal optimization}, Author = {Baldassarre, L. and Morales, J. and Argyriou, A. and Pontil, M.}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2012}, File = {baldassarre2012general.pdf:Statistical Learning\\SPARSITY\\baldassarre2012general.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Baldassarre2012, Title = {Multi-output learning via spectral filtering}, Author = {L. Baldassarre and L. Rosasco and A. Barla and A. Verri}, Journal = {Mach. Learn.}, Year = {2012}, Pages = {259--301}, Volume = {87}, File = {:Papers/Baldassarre2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.05} } @InProceedings{Baldassarre2010b, Title = {Vector Field Learning via Spectral Filtering}, Author = {Baldassarre, L. and Rosasco, L. and Barla, A. and Verri, A.}, Booktitle = {The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD)}, Year = {2010}, Pages = {56--71}, File = {baldassarre2010vector.pdf:Statistical Learning\\Multitask\\baldassarre2010vector.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Baldi2001, Title = {BIOINFORMATICS: The Machine Learning Approach}, Author = {Pierre Baldi and Søren Brunak}, Publisher = {The MIT Press}, Year = {2001}, File = {Baldi,Pierre Bioinformatics The Machine Learning Approach 2001.2Nd Ed Ocr 6.0.pdf:BIO/Baldi,Pierre Bioinformatics The Machine Learning Approach 2001.2Nd Ed Ocr 6.0.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @Article{Balsa-Canto2010, Title = {An iterative identification procedure for dynamic modeling of biochemical networks}, Author = {Balsa-Canto, E. and Alonso, A.A. and Banga, J.R.}, Journal = {BMC Systems Biology}, Year = {2010}, Volume = {4}, Issue = {11}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Balsa-Canto2008, Title = {Computing Optimal Dynamic Experiments for Model Calibration in Predictive Microbiology}, Author = {Balsa-Canto, E. and Alonso, A.A. and Banga, J.R.}, Journal = {J. Food. Proc. Eng.}, Year = {2008}, Pages = {186--206}, Volume = {31}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Banaszek1999, Title = {Maximum-likelihood estimation of the density matrix}, Author = {K. Banaszek and G. M. D’Ariano and M. G. A. Paris and M. F. Sacchi}, Journal = {Phys. Rev. A.}, Year = {1999}, Number = {010304}, Pages = {010304-1 -- 010304-4}, Volume = {61}, Owner = {quoctd}, Timestamp = {2014.04.11} } @Article{Bandara2007, Title = {A Mathematical Model for the Transport of Paclitaxel (Taxol) Across the Blood-Brain Barrier}, Author = {S. Bandara and M. Diehl and G. Fricker}, Journal = {Chem. Eng. Res. Design}, Year = {2007}, Number = {7}, Pages = {1065 - 1071}, Volume = {85}, Doi = {10.1205/cherd06238}, File = {Bandara2007.PDF:Bandara2007.PDF:PDF}, ISSN = {0263-8762}, Keywords = {blood-brain barrier}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S026387620773143X} } @Article{Banerjee2008, Title = {Model selection through sparse maximum likelihood estimation for multivariate gaussian or binary data}, Author = {Banerjee, O. and El Ghaoui, L. and d'Aspremont, A.}, Journal = {J. Mach. Learn. Res.}, Year = {2008}, Pages = {485--516}, Volume = {9}, Owner = {quoctd}, Publisher = {JMLR. org}, Timestamp = {2013.01.10} } @Article{Bansal2007, Title = {Inference of gene networks from temporal gene expression profiles}, Author = {Bansal, M. and di Bernardo, D.}, Journal = {Systems Biology, IET}, Year = {2007}, Pages = {306-312}, Volume = {1}, File = {:/Users/baldassarre/Documents/Scienza/BIO/Gene Expression/bansal07genetworklin.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2009.04.29} } @Article{Bansal2004, Title = {{C}orrelation {C}lustering}, Author = {N. Bansal and A. Blum and S. Chawla}, Journal = {Mach. Learn.}, Year = {2004}, Pages = {89--113}, Volume = {56}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bansal2002a, Title = {Correlation clustering}, Author = {N. Bansal and A. Blum and S. Chawla}, Booktitle = {Proc. Symp. Found. Computer Science}, Year = {2002}, Owner = {quoctd}, Timestamp = {2013.03.15} } @Article{Baraniuk2007, Title = {Compressive sensing}, Author = {Baraniuk, R.G.}, Journal = {IEEE Sig. Proc. Mag.}, Year = {2007}, Number = {4}, Pages = {118--121}, Volume = {24}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @InProceedings{Baraniuk1999, Title = {Optimal tree approximation with wavelets}, Author = {Baraniuk, R.}, Booktitle = {SPIE's International Symposium on Optical Science, Engineering, and Instrumentation}, Year = {1999}, Organization = {International Society for Optics and Photonics}, Pages = {196--207}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Baraniuk2010, Title = {Model-Based Compressive Sensing}, Author = {Baraniuk, R.G. and Cevher, V. and Duarte, M.F. and Hegde, C.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2010}, Month = {April}, Number = {4}, Pages = {1982-2001}, Volume = {56}, ISSN = {0018-9448}, Owner = {jmscarlett} } @Article{Baraniuk2010b, Title = {Low-dimensional models for dimensionality reduction and signal recovery: A geometric perspective}, Author = {Baraniuk, R.G. and Cevher, V. and Wakin, M.B.}, Journal = {Proc. IEEE}, Year = {2010}, Number = {6}, Pages = {959--971}, Volume = {98}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Baraniuk2008, Title = {A simple proof of the restricted isometry property for random matrices}, Author = {Baraniuk, Richard and Davenport, Mark and DeVore, Ronald and Wakin, Michael}, Journal = {Constructive Approx.}, Year = {2008}, Number = {3}, Pages = {253--263}, Volume = {28}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Baraniuk2002, Title = {Near best tree approximation}, Author = {Baraniuk, R. and DeVore, R. and Kyriazis, G. and Yu, X.}, Journal = {Adv. Comp. Math.}, Year = {2002}, Number = {4}, Pages = {357--373}, Volume = {16}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Baraniuk1994, Title = {A signal-dependent time-frequency representation: fast algorithm for optimal kernel design}, Author = {Baraniuk, R.G. and Jones, D.L.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {1994}, Number = {1}, Pages = {134-146}, Volume = {42}, Doi = {10.1109/78.258128}, ISSN = {1053-587X}, Keywords = {linear programming;linear systems;signal processing;time-frequency analysis;tree data structures;bilinear time-frequency distributions;fast algorithm;linear program;optimal kernel design;optimization formulation;running time;signal-dependent time-frequency representation;sorting;tree structure;Algorithm design and analysis;Constraint optimization;Cost function;Distributed computing;Kernel;Signal analysis;Signal design;Sorting;Time frequency analysis;Tree data structures}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Barbero2011, Title = {Fast Newton-type methods for total variation regularization}, Author = {Barbero, A. and Sra, S.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2011}, Pages = {313--320}, File = {barbero2011fast.pdf:Optimization\\barbero2011fast.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Barlett2002, Title = {{R}ademacher and {G}aussian complexities: Risk bounds and structural results}, Author = {Barlett, Peter L. and Mendelson, Shahar}, Journal = {J. Mach. Learn. Res.}, Year = {2002}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.07.02} } @Book{Barner2002, Title = {{A}nalysis {I}}, Author = {M. Barner and F. Flohr}, Publisher = {de Gruyter}, Year = {2002}, Address = {Berlin}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Baron2011, Title = {Universal {MAP} estimation in compressed sensing}, Author = {Baron, D. and Duarte, M.F.}, Booktitle = {Allerton Conf. on Comm., Control and Comp.}, Year = {2011}, Month = {Sept.}, Pages = {768-775}, Owner = {jmscarlett} } @Book{Barrett1994, Title = {Templates for the Solution of Linear Systems: Building Blocks for Iterative Methods.}, Author = {Barrett, R. and Berry, M. and Chan, T. and Demmel, J. and Donato, J. and Dongarra, Jack and Eijkhout, V. and Pozo, R. and Romine, C. and Der, H.}, Publisher = {Philadalphia: Society for Industrial and Applied Mathematics. Also available as postscript file on http://www.netlib.org\/templates\/Templates.html}, Year = {1994}, Abstract = {how the templates and {BLAS} software can be obtained. A glossary of important terms used in the book is also provided. The field of iterative methods for solving systems of linear equations is in constant flux, with new methods and approaches continually being created, modified, tuned, and some eventually discarded. We expect the material in this book to undergo changes from time to time as some of these new approaches mature and become the state-ofthe -art. Therefore, we plan to update the...}, File = {Barrett1994.pdf:Barrett1994.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.56.3809} } @Article{Barron1994, Title = {Performance of optical flow techniques}, Author = {Barron, JL and Fleet, DJ and Beauchemin, SS}, Journal = {Int. J. Comp. Vision}, Year = {1994}, Number = {1}, Pages = {43--77}, Volume = {12}, File = {:VC/barron94performance.pdf:PDF}, Owner = {baldassarre}, Publisher = {Springer}, Timestamp = {2009.08.18} } @Article{Bartlett2002a, Title = {Rademacher and Gaussian complexities: Risk bounds and structural results}, Author = {Bartlett, P.L. and Mendelson, S.}, Journal = {J. Mach. Learn. Res.}, Year = {2002}, Number = {3}, Pages = {463--482}, Volume = {3}, File = {bartlett2002rademacher.pdf:Statistical Learning/bartlett2002rademacher.pdf:PDF}, Owner = {baldassarre}, Publisher = {Springer}, Timestamp = {2010.01.05} } @Article{Bartlett2006, Title = {Convexity, classification, and risk bounds}, Author = {Bartlett, Peter L. and Jordan, Michael I. and McAuliffe, Jon D.}, Journal = {J. Amer. Math. Assoc.}, Year = {2006}, Month = mar, Number = {473}, Pages = {138--156}, Volume = {101}, Owner = {yhli}, Timestamp = {2014.07.24} } @TechReport{Bartlett2003, Title = {Convexity, Classification, and Risk Bounds}, Author = {P. L. Bartlett and M. I. Jordan and J. D. McAuliffe}, Institution = {University of California, Berkeley}, Year = {2003}, File = {Bartlett03ConvexityBounds.pdf:Statistical Learning/Bartlett03ConvexityBounds.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @Article{Barzilai1988, Title = {{Two-Point Step Size Gradient Methods}}, Author = {Barzilai, J. and Borwein, J. M.}, Journal = {IMA J. Numer. Anal.}, Year = {1988}, Month = jan, Number = {1}, Pages = {141--148}, Volume = {8}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Batschelet1980, Title = {{E}inf\"uhrung in die {M}athematik f\"ur {B}iologen}, Author = {E. Batschelet}, Publisher = {Springer}, Year = {1980}, Address = {Heidelberg}, Note = {Sehr sch\"one Beispiele}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bauer2005, Title = {Estimating Linear Dynamical Systems Using Subspace Methods}, Author = {Bauer, Dietmar}, Journal = {Econometric Theory}, Year = {2005}, Month = {February}, Note = {available at http://ideas.repec.org/a/cup/etheor/v21y2005i01p181-211.html}, Number = {01}, Pages = {181-211}, Volume = {21}, File = {Bauer05Subspace.pdf:Statistics/Bauer05Subspace.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bauer2007, Title = {On regularization algorithms in learning theory}, Author = {Bauer, Frank and Pereverzev, Sergei and Rosasco, Lorenzo}, Journal = {J. Complex.}, Year = {2007}, Number = {1}, Pages = {52--72}, Volume = {23}, Address = {Orlando, FL, USA}, Doi = {http://dx.doi.org/10.1016/j.jco.2006.07.001}, File = {:Statistical Learning/bauer07regularization.pdf:PDF}, ISSN = {0885-064X}, Owner = {Luca}, Publisher = {Academic Press, Inc.}, Timestamp = {2008.08.13} } @PhdThesis{Bauer1999, Title = {{N}umerische {V}erfahren zur {L}\"osung von {A}nfangswertaufgaben und zur {G}enerierung von ersten und zweiten {A}bleitungen mit {A}nwendungen bei {O}ptimierungsaufgaben in {C}hemie und {V}erfahrenstechnik}, Author = {I. Bauer}, School = {Universit\"at Heidelberg}, Year = {1999}, File = {Bauer1999.pdf:Bauer1999.pdf:PDF}, Keywords = {agbock DAE}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.ub.uni-heidelberg.de/archiv/1513} } @Article{Bauer2000, Title = {{N}umerical methods for optimum experimental design in {DAE} systems}, Author = {I. Bauer and H.G. Bock and S. K\"orkel and J.P. Schl\"oder}, Journal = {J. Comp. App. Math.}, Year = {2000}, Number = {1-2}, Pages = {1--15}, Volume = {120}, File = {Bauer2000.pdf:Bauer2000.pdf:PDF}, Keywords = {agbock DAE experimental design}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Misc{Bauer1999a, Title = {{DAESOL} -- a {BDF}-code for the numerical solution of differential algebraic equations}, Author = {I. Bauer and H.G. Bock and J.P. Schl\"oder}, HowPublished = {Internal report, IWR, SFB 359, Universit\"at Heidelberg}, Year = {1999}, File = {Bauer1999a.pdf:Bauer1999a.pdf:PDF}, Keywords = {agbock DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bauer1997, Title = {{S}imulation of chemical reactions and dust destruction in protoplanetary accretion discs}, Author = {I. Bauer and F. Finocchi and W.J. Duschl and H.-P. Gail and J.P. Schl\"oder}, Journal = {Astron. Astrophys.}, Year = {1997}, Pages = {273--289}, Volume = {317}, Keywords = {agbock DAE chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bausa2001, Title = {{D}etailed {M}odeling of {S}tationary and {T}ransient {M}ass {T}ransfer {A}cross {P}ervaporation {M}embranes}, Author = {J. Bausa and W. Marquardt}, Journal = {{AIChE} Journal}, Year = {2001}, Number = {6}, Pages = {1318--1332}, Volume = {47}, Keywords = {chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Bauschke2011, Title = {Convex analysis and monotone operator thoery in {H}ilbert spaces}, Author = {Bauschke, Heinz H. and Combettes, Patrick L.}, Publisher = {Springer}, Year = {2011}, Address = {New York, NY}, Owner = {yhli}, Timestamp = {2014.11.07} } @Book{Baxevanis2001, Title = {Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Second Edition}, Author = {Andreas D. Baxevanis and B. F. Francis Ouellette}, Publisher = {Wiley-Interscience}, Year = {2001}, File = {Bioinformatics - Computational Genetics - Wiley.pdf:BIO/Bioinformatics - Computational Genetics - Wiley.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @Article{Baxter2000, Title = {A model of inductive bias learning}, Author = {Baxter, J.}, Journal = {J. Art. Int. Res.}, Year = {2000}, Pages = {149--198}, Volume = {12}, File = {baxter2000model.pdf:Statistical Learning/Multitask/baxter2000model.pdf:PDF}, Owner = {baldassarre}, Publisher = {Citeseer}, Timestamp = {2010.01.05} } @Book{Bazaara1979, Title = {{N}onlinear {P}rogramming: {T}heory and {A}pplications}, Author = {Bazaara, M.S. and C.M. Shetty}, Publisher = {Wiley}, Year = {1979}, Address = {New York}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Beal2005, Title = {A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.}, Author = {Matthew J Beal and Francesco Falciani and Zoubin Ghahramani and Claudia Rangel and David L Wild}, Journal = {Bioinformatics}, Year = {2005}, Month = {Feb}, Number = {3}, Pages = {349--356}, Volume = {21}, Abstract = {MOTIVATION: We have used state-space models (SSMs) to reverse engineer transcriptional networks from highly replicated gene expression profiling time series data obtained from a well-established model of T cell activation. SSMs are a class of dynamic Bayesian networks in which the observed measurements depend on some hidden state variables that evolve according to Markovian dynamics. These hidden variables can capture effects that cannot be directly measured in a gene expression profiling experiment, for example: genes that have not been included in the microarray, levels of regulatory proteins, the effects of mRNA and protein degradation, etc. RESULTS: We have approached the problem of inferring the model structure of these state-space models using both classical and Bayesian methods. In our previous work, a bootstrap procedure was used to derive classical confidence intervals for parameters representing 'gene-gene' interactions over time. In this article, variational approximations are used to perform the analogous model selection task in the Bayesian context. Certain interactions are present in both the classical and the Bayesian analyses of these regulatory networks. The resulting models place JunB and JunD at the centre of the mechanisms that control apoptosis and proliferation. These mechanisms are key for clonal expansion and for controlling the long term behavior (e.g. programmed cell death) of these cells. AVAILABILITY: Supplementary data is available at http://public.kgi.edu/wild/index.htm and Matlab source code for variational Bayesian learning of SSMs is available at http://www.cse.ebuffalo.edu/faculty/mbeal/software.html.}, Doi = {10.1093/bioinformatics/bti014}, File = {Beal05.pdf:BIO/Beal05.pdf:PDF}, Keywords = {Bayes Theorem; Computer Simulation; Gene Expression Profiling; Gene Expression Regulation; Markov Chains; Models, Genetic; Models, Statistical; Oligonucleotide Array Sequence Analysis; Signal Transduction; Transcription Factors}, Owner = {luca}, Pii = {bti014}, Pmid = {15353451}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1093/bioinformatics/bti014} } @InProceedings{Beccuti2006, Title = {A distributed solution approach to centralized emergency voltage control}, Author = {Beccuti, A.G. and Morari, M.}, Booktitle = {Amer. Control Conf. (ACC)}, Year = {2006}, Month = {june}, Pages = {6}, Doi = {10.1109/ACC.2006.1657251}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Beck2010, Title = {A sequential parametric convex approximation method with applications to nonconvex truss topology design problems}, Author = {A. Beck and A. Ben-Tal and L. Tetruashvili}, Journal = {J. Global Opt.}, Year = {2010}, Pages = {29--51}, Volume = {47}, File = {:Papers/Beck2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Beck2012b, Title = {Sparsity Constrained Nonlinear Optimization: Optimality Conditions and Algorithms}, Author = {A. Beck and Y.C. Eldar}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Beck2012b.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Beck2012, Title = {On the solution of the {GPS} localization and circle fitting problems}, Author = {A. Beck and D. Pan}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {1}, Pages = {108--134}, Volume = {22}, File = {:Papers/Beck2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Beck2014, Title = {A fast dual proximal gradient algorithm for convex minimization and applications}, Author = {A. Beck and M. Teboulle}, Journal = {Oper. Res. Lett.}, Year = {2014}, Number = {1}, Pages = {1--6}, Volume = {42}, Owner = {quoctd}, Timestamp = {2014.03.14} } @Article{Beck2012a, Title = {Smoothing and First Order Methods: A Unified Framework}, Author = {A. Beck and M. Teboulle}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {2}, Pages = {557--580}, Volume = {22}, File = {:Papers/Beck2012a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Beck2009, Title = {A fast iterative shrinkage-thresholding algorithm for linear inverse problems}, Author = {Beck, Amir and Teboulle, Marc}, Journal = {SIAM J. Imaging Sci.}, Year = {2009}, Number = {1}, Pages = {183--202}, Volume = {2}, Owner = {yhli}, Timestamp = {2014.03.13} } @Article{Beck2009a, Title = {{A} {F}ast {I}terative {S}hrinkage-{T}hresholding {A}lgorithm for {L}inear {I}nverse {P}roblems}, Author = {Beck, A. and Teboulle, M.}, Journal = {SIAM J. Imaging Sciences}, Year = {2009}, Number = {1}, Pages = {183--202}, Volume = {2}, Owner = {quoctd}, Timestamp = {2012.06.28} } @Article{Beck2009b, Title = {Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems}, Author = {A. Beck and M. Teboulle}, Journal = {IEEE Trans. Image Proc.}, Year = {2009}, Number = {11}, Pages = {2419--2434}, Volume = {18}, Owner = {quoctd}, Timestamp = {2013.03.15} } @Article{Beck2003, Title = {Mirror descent and nonlinear projected subgradient methods for convex optimization}, Author = {Beck, Amir and Teboulle, Marc}, Journal = {Oper. Res. Lett.}, Year = {2003}, Pages = {167--175}, Volume = {31}, Owner = {yhli}, Timestamp = {2014.03.18} } @Book{Beck-Bornholdt2001, Title = {{D}er {H}und, der {E}ier legt. {E}rkennen von {F}ehlinformation durch {Q}uerdenken}, Author = {H.-P. Beck-Bornholdt and H.-H. Dubben and I. Hoffmann}, Publisher = {Rowohlt Taschenbuch}, Year = {2001}, Address = {Reinbek}, Edition = {2}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Becker2004, Title = {{N}umerical parameter estimation for chemical models in multidimensional reactive flows}, Author = {R. Becker and M. Braack and B. Vexler}, Journal = {Combustion Theory and Modelling}, Year = {2004}, Number = {4}, Pages = {661--682}, Volume = {8}, Keywords = {chemistry parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Becker2011c, Title = {NESTA: a fast and accurate first-order method for sparse recovery}, Author = {Becker, S. and Bobin, J. and Cand{\`e}s, E.J.}, Journal = {SIAM Journal on Imaging Sciences}, Year = {2011}, Number = {1}, Pages = {1--39}, Volume = {4}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Becker2011b, Title = {{NESTA}: a fast and accurate first-order method for sparse recovery}, Author = {S. Becker and J. Bobin and E.J. Cand\`{e}s}, Journal = {SIAM J. Imaging Sci.}, Year = {2011}, Number = {1}, Pages = {1--39}, Volume = {4}, File = {:Papers/Becker2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.10} } @Article{Becker2011, Title = {Templates for convex cone problems with applications to sparse signal recovery}, Author = {Becker, Stephen and Candès, Emmanuel and Grant, Michael}, Journal = {Math. Prog. Comp.}, Year = {2011}, Note = {10.1007/s12532-011-0029-5}, Pages = {1-54}, Affiliation = {Applied and Computational Mathematics, California Institute of Technology, Pasadena, CA 91125, USA}, File = {becker2010templates.pdf:Optimization/becker2010templates.pdf:PDF}, ISSN = {1867-2949}, Keyword = {Mathematics}, Owner = {jmscarlett}, Publisher = {Springer Berlin / Heidelberg}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1007/s12532-011-0029-5} } @Article{Becker2012c, Title = {Sparse projections onto the simplex}, Author = {Becker, S. and Cevher, V. and Koch, C. and Kyrillidis, A.}, Journal = {arXiv preprint arXiv:1206.1529}, Year = {2012}, File = {becker2012sparse.pdf:Optimization/becker2012sparse.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Becker2013, Title = {An Algorithm for Splitting Parallel Sums of Linearly Composed Monotone Operators, with Applications to Signal Recovery}, Author = {Becker, Stephen and Combettes, Patrick L}, Journal = {arXiv preprint arXiv:1305.5828}, Year = {2013}, File = {becker2013algorithm.pdf:Optimization/becker2013algorithm.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Conference{Becker2012, Title = {A quasi-{N}ewton proximal splitting method}, Author = {S. Becker and M.J. Fadili}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2012}, File = {:Papers/Becker2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.10} } @TechReport{Becker2012a, Title = {A quasi-Newton proximal splitting method}, Author = {S. Becker and M.J. Fadili}, Institution = {LJLL, CNRS-UPMC, Paris France}, Year = {2012}, Type = {Tech. Report}, Owner = {quoctd}, Timestamp = {2013.01.30} } @Article{Beer2004, Title = {Predicting gene expression from sequence.}, Author = {Michael A Beer and Saeed Tavazoie}, Journal = {Cell}, Year = {2004}, Month = {Apr}, Number = {2}, Pages = {185--198}, Volume = {117}, Abstract = {We describe a systematic genome-wide approach for learning the complex combinatorial code underlying gene expression. Our probabilistic approach identifies local DNA-sequence elements and the positional and combinatorial constraints that determine their context-dependent role in transcriptional regulation. The inferred regulatory rules correctly predict expression patterns for 73\% of genes in Saccharomyces cerevisiae, utilizing microarray expression data and sequences in the 800 bp upstream of genes. Application to Caenorhabditis elegans identifies predictive regulatory elements and combinatorial rules that control the phased temporal expression of transcription factors, histones, and germline specific genes. Successful prediction requires diverse and complex rules utilizing AND, OR, and NOT logic, with significant constraints on motif strength, orientation, and relative position. This system generates a large number of mechanistic hypotheses for focused experimental validation, and establishes a predictive dynamical framework for understanding cellular behavior from genomic sequence.}, File = {Beer04Predicting Gene Expr from Seq.pdf:BIO/Beer04Predicting Gene Expr from Seq.pdf:PDF}, Keywords = {Animals; Base Sequence; Bayes Theorem; Cae; Gene Expression Profiling; Gene Expression Regulation; Genes; Genome; Models, Statistical; Multigene Family; Oligonu; Predictive Value of Tests; Recombination, Genetic; Reproducibility of Results; Saccharomyces cerevisiae; Transcription Factors; cleotide Array Sequence Analysis; norhabditis elegans}, Owner = {luca}, Pii = {S0092867404003046}, Pmid = {15084257}, Timestamp = {2007.01.25} } @PhdThesis{Belkin2003, Title = {Problems of Learning on Manifolds}, Author = {Belkin}, School = {University of Chicago}, Year = {2003}, File = {Belkin - Problems of learning on manifolds.pdf:Statistical Learning/Belkin - Problems of learning on manifolds.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @TechReport{Belkin2002, Title = {Laplacian Eigenmaps for Dimensionality Reduction and Data Representation}, Author = {Belkin and Niyogi}, Year = {2002}, File = {BelkinNiyogi03Laplacian.pdf:Statistical Learning/BelkinNiyogi03Laplacian.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Belloni2011, Title = {Square-root lasso: {P}ivotal recovery of sparse signals via conic programming}, Author = {A. Belloni and V. Chernozhukov and L. Wang}, Journal = {Biometrika}, Year = {2011}, Number = {4}, Pages = {791--806}, Volume = {94}, Owner = {quoctd}, Timestamp = {2014.01.27} } @Article{Belloni2013, Title = {Honest confidence regions for a regression parameter in logistic regression with a large number of controls}, Author = {Belloni, Alexandre and Chernozhukov, Victor and Wei, Ying}, Year = {2013}, Month = aug, Note = {arXiv:1304.3996v2 [stat.ME]}, Owner = {yhli}, Timestamp = {2014.08.13} } @Article{Bemporad2003, Title = {{M}in-max {C}ontrol of {C}onstrained {U}ncertain {D}iscrete-{T}ime {L}inear {S}ystems}, Author = {Bemporad, A. and F. Borrelli and M. Morari}, Journal = {IEEE Trans. Aut. Control}, Year = {2003}, Note = {in press}, File = {Bemporad2003.pdf:Bemporad2003.pdf:PDF}, Keywords = {optimal control robust hybrid}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bemporad2002, Title = {{M}odel {P}redictive {C}ontrol {B}ased on {L}inear {P}rogramming - {T}he {E}xplicit {S}olution}, Author = { Bemporad, A. and Borrelli, F. and Morari, M.}, Journal = {IEEE Trans. Aut. Control}, Year = {2002}, Number = {12}, Pages = {1974--1985}, Volume = {47}, Keywords = {optimal control robust hybrid NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bemporad1999, Title = {{T}he {E}xplicit {S}olution of {C}onstrained {LP}-{B}ased {R}eceding {H}orizon {C}ontrol}, Author = {A. Bemporad and F. Borrelli and M. Morari}, Booktitle = {Proc. {IEEE} Conf. Decision and Control}, Year = {1999}, Address = {Sydney, Australia}, Keywords = {optimal control robust hybrid realtime}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bemporad2000, Title = {{P}redictive {C}ontrol of {C}onstrained {H}ybrid {S}ystems}, Author = {Bemporad, A. and Morari, M.}, Booktitle = {Nonlinear Predictive Control}, Year = {2000}, Address = {Basel Boston Berlin}, Editor = {F. Allg\"ower and A. Zheng}, Pages = {71--98}, Publisher = {Birkh\"auser}, Series = {Progress in Systems Theory}, Volume = {26}, Key = {ISBN 3-7643-6297-9}, Keywords = {optimal control robust hybrid NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Bemporad1999a, Title = {{R}obust model predictive control: {A} survey}, Author = {A. Bemporad and M. Morari}, Booktitle = {Robustness in Identification and Control}, Publisher = {Springer-Verlag}, Year = {1999}, Editor = {A. Garulli and A. Tesi and A. Vicino}, Number = { 245}, Pages = { 207--226}, Series = {Lecture Notes in Control and Information Sciences}, Keywords = {optimal control robust hybrid}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bemporad1999b, Title = {{C}ontrol of systems integrating logic, dynamics, and constraints}, Author = {A. Bemporad and M. Morari}, Journal = {Automatica}, Year = {1999}, Number = {3}, Pages = {407--427}, Volume = {35}, File = {Bemporad1999b.pdf:Bemporad1999b.pdf:PDF}, Keywords = {optimal control robust hybrid}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bemporad2009, Title = {Multiobjective model predictive control}, Author = {Alberto Bemporad and David Muñoz de la Peña}, Journal = {Automatica}, Year = {2009}, Number = {12}, Pages = {2823 - 2830}, Volume = {45}, Doi = {10.1016/j.automatica.2009.09.032}, File = {Bemporad2009.pdf:Bemporad2009.pdf:PDF}, ISSN = {0005-1098}, Keywords = {Model predictive control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0005109809004427} } @Article{Bengio2009, Title = {Learning deep architectures for {AI}}, Author = {Bengio, Y.}, Journal = {Found. Trends Mach. Learn.}, Year = {2009}, Number = {1}, Pages = {1--127}, Volume = {2}, Owner = {jmscarlett}, Publisher = {Now Publishers Inc.}, Timestamp = {2014.11.25} } @Article{Bengio2013, Title = {Representation Learning: A Review and New Perspectives}, Author = {Bengio, Y. and Courville, A and Vincent, P.}, Journal = {IEEE Trans. Patt. Analysis and Mach. Intel.}, Year = {2013}, Month = {Aug.}, Number = {8}, Pages = {1798-1828}, Volume = {35}, Doi = {10.1109/TPAMI.2013.50}, ISSN = {0162-8828}, Owner = {jmscarlett} } @InBook{Bennett2003, Title = {Advances in Learning Theory, Methods, Models and Applications}, Author = {Bennett, K.P. and Embrechts, M.J.}, Chapter = {An Optimization Perspective on Kernel Partial Least Squares Regression}, Editor = {Suykens, J.A.K. and Horvath, G. and Basu, S. and Micchelli, C. and Vandewalle, J.}, Pages = {227-250}, Publisher = {IOS Press}, Year = {2003}, File = {bennett03kpls.pdf:Statistical Learning/Vector-valued/bennett03kpls.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.06.20} } @Book{Benson1993, Title = {{P}olynomial invariants of finite groups}, Author = {Benson, D.J.}, Publisher = {Cambridge University Press}, Year = {1993}, Address = {Cambridge}, ISBN = {0-521-45886-2}, Keywords = {miscellaneous}, Owner = {quoctd}, Pages = {x+118}, Timestamp = {2013.08.23} } @Article{Ben-Tal2001b, Title = {The ordered subsets mirror descent optimization method with applications to tomography}, Author = {A. Ben-Tal and T. Margalit and A. Nemirovski}, Journal = {SIAM J. Opt.}, Year = {2001}, Pages = {79--108}, Volume = {12}, Owner = {quoctd}, Timestamp = {2014.04.08} } @Book{Ben-Tal2001c, Title = {Lectures on Modern Convex Optimization: Analysis, Algorithms, and Engineering Applications}, Author = {A. Ben-Tal and A.K. Nemirovski}, Editor = {Philadelphia}, Publisher = {SIAM}, Year = {2001}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Ben-Tal2012, Title = {Solving large scale polynomial convex problems on $l_1$/nuclear norm balls by randomized first-order algorithms}, Author = {A. Ben-Tal and A. Nemirovski}, Journal = {Arxiv.org}, Year = {2012}, Number = {Faculty of Industrial Engineering and Management, Technion Technion city, Haifa 32000, Israel}, Pages = {1--29}, Volume = {xx}, File = {:Papers/Ben-Tal2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26}, Url = {http://arxiv.org/abs/1210.6853} } @Article{Ben-Tal1996, Title = {Hidden convexity in some nonconvex quadratically constrained quadratic programming}, Author = {Ben-Tal, A. and Teboulle, M.}, Journal = {Math. Program.}, Year = {1996}, Pages = {51--63}, Volume = {72}, Owner = {quoctd}, Timestamp = {2012.06.28} } @Article{Ben-Tal1997, Title = {Penalty-barrier multiplier methods for convex programming problems}, Author = {A. Ben-Tal and M. Zibulevsky}, Journal = {SIAM J. Opt.}, Year = {1997}, Number = {2}, Pages = {347--366}, Volume = {7}, File = {:Papers/Ben-Tal1997.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Benzi2002, Title = {{P}reconditioning {T}echniques for {L}arge {L}inear {S}ystems: {A} {S}urvey}, Author = {Benzi, M.}, Journal = {J. Comp. Phys.}, Year = {2002}, Pages = {418--477}, Volume = {182}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Benzi2000, Title = {{O}rderings for {F}actorized {S}parse {A}pproximate {I}nverse {P}reconditioners}, Author = {Benzi, M. and Tuma, M.}, Journal = {{SIAM} J. Sci. Comp.}, Year = {2000}, Number = {5}, Pages = {1851--1868}, Volume = {21}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Berg2007, Title = {Sparco: {A} testing framework for sparse reconstruction}, Author = {E. {van den} Berg and M. P. Friedlander and G. Hennenfent and F. Herrmann and R. Saab and {\"O}. Y{\i}lmaz}, Institution = {Dept. Computer Science}, Year = {2007}, Address = {University of British Columbia, Vancouver}, Month = {October}, Number = {TR-2007-20}, Owner = {quoctd}, Timestamp = {2014.04.16} } @Article{Berg2012, Title = {A single-photon sampling architecture for solid-state imaging sensors}, Author = {van den Berg, E. and Candes, E. and Chinn, G. and Levin, C. and Olcott, P. and Sing-Long, C.}, Journal = {Stat - Stanford - Technical Report}, Year = {2012}, File = {vandenberg2012single.pdf:COMPRESSIVE SENSING/vandenberg2012single.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2013.04.22} } @Article{Berg1990, Title = {{C}hemotaxis of {B}acteria in {G}lass {C}apillary {A}rrays}, Author = {H.C. Berg and L. Turner}, Journal = {Biophysical Journal}, Year = {1990}, Pages = {919}, Volume = {58}, File = {Berg1990.pdf:Berg1990.pdf:PDF}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Berinde2008, Title = {Combining geometry and combinatorics: a unified approach to sparse signal recovery}, Author = {Berinde, R. and Gilbert, A. C. and Indyk, P. and Karloff, H. and Strauss, M. J.}, Booktitle = {Allerton Conf. on Comm., Control and Comp.}, Year = {2008}, Month = sep, Pages = {798--805}, Owner = {yhli}, Timestamp = {2014.07.01} } @InProceedings{Berkes2007, Title = {On Sparsity and Overcompleteness in Image Models}, Author = {Berkes, Pietro and Turner, Richard and Sahani, Maneesh}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2007}, File = {berkes07sparsity.pdf:VC/berkes07sparsity.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.02.12} } @Article{Bernaerts2002, Title = {Optimal temperature input design for estimation of the {R}atkowsky {S}quare {R}oot model parameters: parameter accuracy and model validity restrictions}, Author = {Bernaerts, K. and Servaes, R.D. and Kooyman, S. and Versyck, K.J. and Van Impe, J.F.}, Journal = {Int. J. Food. Microbiology}, Year = {2002}, Number = {2--3}, Pages = {145--157}, Volume = {73}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bertsekas2011, Title = {Incremental proximal methods for large scale convex optimization}, Author = {Bertsekas, D.P.}, Journal = {Math. Program.}, Year = {2011}, Number = {2}, Pages = {163--195}, Volume = {129}, Owner = {quoctd}, Timestamp = {2012.08.18} } @Article{Bertsekas2011a, Title = {Incremental gradient, subgradient, and proximal methods for convex optimization: A survey}, Author = {D.P. Bertsekas}, Journal = {Optimization for Machine Learning}, Year = {2011}, Pages = {1--38}, Volume = {xx}, File = {:Papers/Bertsekas2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Bertsekas1982, Title = {Projected Newton methods for optimization problems with simple constraints}, Author = {Bertsekas, D.}, Journal = {SIAM Journal on control and Optimization}, Year = {1982}, Number = {2}, Pages = {221--246}, Volume = {20}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Bertsekas1979, Title = {{C}onvexification {P}rocedures and {D}ecomposition {M}ethods for {N}onconvex {O}ptimization {P}roblems}, Author = {Bertsekas, D.P.}, Journal = {J. Opt. Theory and Apps.}, Year = {1979}, Number = {2}, Pages = {169--197}, Volume = {29}, Owner = {quoctd}, Timestamp = {2012.06.07} } @Book{Bertsekas1996b, Title = {{S}tochastic {O}ptimal {C}ontrol: {T}he {D}iscrete {T}ime {C}ase}, Author = {Bertsekas, D.P. and Shreve, S.E.}, Publisher = {Athena Scientific}, Year = {1996}, Address = {Belmont, MA}, Keywords = {optimal control, OPTEC-library}, Owner = {quoctd}, Timestamp = {2012.11.25} } @Book{Bertsekas1996a, Title = {{N}euro-{D}ynamic {P}rogramming}, Author = {Bertsekas, D.P. and Tsitsiklis, J.N.}, Publisher = {Athena Scientific}, Year = {1996}, Address = {Belmont, MA}, Keywords = {optimal control, OPTEC-library}, Owner = {quoctd}, Timestamp = {2012.11.25} } @Article{Bertsekas1991, Title = {{S}ome {A}spects of {P}arallel and {D}istributed {I}terative {A}lgorithms - {A} {S}urvey}, Author = {D.P. Bertsekas and J.N. Tsitsiklis}, Journal = {Automatica}, Year = {1991}, Number = {1}, Pages = {3--21}, Volume = {27}, File = {:Papers/Bertsekas1991.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.11} } @Book{Bertsekas1996, Title = {{C}onstrained {O}ptimization and {L}agrange {M}ultiplier {M}ethods ({O}ptimization and {N}eural {C}omputation {S}eries)}, Author = {Dimitri P. Bertsekas}, Publisher = {Athena Scientific}, Year = {1996}, Added-at = {2009-08-14T15:59:35.000+0200}, Asin = {1886529043}, Biburl = {http://www.bibsonomy.org/bibtex/2d48c40d4067d2aee63eed3f91cbd5a9b/ahmedjawwad4u}, Description = {Amazon.com: Constrained Optimization and Lagrange Multiplier Methods (Optimization and Neural Comp. Series) (9781886529045): Dimitri P. Bertsekas: Books}, Ean = {9781886529045}, Interhash = {1a85768c18441adba5282c5787939af2}, Intrahash = {d48c40d4067d2aee63eed3f91cbd5a9b}, ISBN = {1886529043}, Keywords = {book lagrange-multiplier optimization distributed}, Owner = {quoctd}, Timestamp = {2012.11.25} } @Article{Bertsekas1982a, Title = {Constrained optimization and Lagrange multiplier methods}, Author = {Bertsekas, Dimitri P}, Journal = {Comp. Sci. App. Math.}, Year = {1982}, Volume = {1}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Bertsekas1981, Title = {Projected Newton methods for optimization problems with simple constraints}, Author = {Dimitri P. Bertsekas}, Booktitle = {Decision and Control including the Symposium on Adaptive Processes, 1981 20th IEEE Conference on}, Year = {1981}, Month = dec., Pages = {762-767}, Volume = {20}, Doi = {10.1109/CDC.1981.269317}, File = {Bertsekas1981.pdf:Bertsekas1981.pdf:PDF}, Keywords = {distributed optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bertsekas1989, Title = {Convergence rate and termination of asynchronous iterative algorithms}, Author = {Bertsekas, Dimitri P. and Tsitsiklis, John N.}, Booktitle = {Proc. Int. Conf. Supercomputing}, Year = {1989}, Address = {New York, NY, USA}, Pages = {461--470}, Publisher = {ACM}, Series = {ICS '89}, Acmid = {318894}, Doi = {http://doi.acm.org/10.1145/318789.318894}, File = {Bertsekas1989a.pdf:Bertsekas1989a.pdf:PDF}, ISBN = {0-89791-309-4}, Keywords = {asynchronous algorithms, distributed algorithms, iterative methods, parallel algorithms, termination detection, distributed optimization}, Location = {Crete, Greece}, Numpages = {10}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://doi.acm.org/10.1145/318789.318894} } @Article{Bertsimas2011, Title = {{T}heory and {A}pplications of {R}obust {O}ptimization}, Author = {Bertsimas, D. Brown, D.B. and Caramanis, C.}, Journal = {SIAM Rev.}, Year = {2011}, Number = {3}, Pages = {464--501}, Volume = {53}, File = {:Papers/Bertsimas2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.06.07} } @Conference{Bhan2013, Title = {Tractability of Interpretability via Selection of Group-Sparse Models}, Author = {Bhan, N. and Baldassarre, L. and Cevher, V.}, Booktitle = {IEEE Int. Symp. Inf. Theory}, Year = {2013}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bhaskar2012, Title = {Atomic norm denoising with applications to line spectral estimation}, Author = {B.N. Bhaskar and G. Tang and B. Recht}, Journal = {arXiv preprint arXiv:1204.0562}, Year = {2012}, Pages = {1--27}, Owner = {quoctd}, Timestamp = {2014.04.04} } @Article{Bickel2009, Title = {Simultaneous analysis of {L}ASSO and {D}antzig selector}, Author = {Bickel, Peter and Ritov, Ya'acov and Tsybakov, Alexandre B.}, Journal = {Ann. Stats.}, Year = {2009}, Number = {4}, Pages = {1705--1732}, Volume = {37}, Owner = {yhli}, Timestamp = {2014.02.14} } @Article{Bickel2006, Title = {Regularization in statistics}, Author = {Bickel, Peter J. and Li, Bo}, Journal = {Test}, Year = {2006}, Number = {2}, Pages = {271--344}, Volume = {15}, Owner = {yhli}, Timestamp = {2014.07.04} } @InProceedings{Biegler2000, Title = {{E}fficient solution of dynamic optimization and {NMPC} problems}, Author = {L.T. Biegler}, Booktitle = {Nonlinear Predictive Control}, Year = {2000}, Address = {Basel Boston Berlin}, Editor = {F. Allg\"ower and A. Zheng}, Pages = {219--244}, Publisher = {Birkh\"auser}, Series = {Progress in Systems Theory}, Volume = {26}, Key = {ISBN 3-7643-6297-9}, Keywords = {collocation optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Biegler1984, Title = {{S}olution of dynamic optimization problems by successive quadratic programming and orthogonal collocation}, Author = {Biegler, L.T.}, Journal = {Comp. Chem. Eng.}, Year = {1984}, Pages = {243--248}, Volume = {8}, Keywords = {collocation optimal control SQP}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Biegler1997, Title = {{N}umerical experience with a reduced {Hessian} method for large scale optimization}, Author = {L. Biegler and J. Nocedal and C. Schmitt and D. Ternet}, Year = {1997}, Address = {Evanston, IL 60208--3119, USA}, Number = {OTC\,97/06}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Biegler1991, Title = {{O}ptimization approaches to nonlinear model predictive control}, Author = {Biegler, L.T. and Rawlings, J.B}, Booktitle = {Proc. Int. Conf. Chemical Process Control}, Publisher = {{AIChE}, CACHE}, Year = {1991}, Editor = {W.H. Ray and Y. Arkun}, Pages = {543--571}, Keywords = {collocation optimal control NMPC}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Biegler2002, Title = {{A}dvances in simultaneous strategies for dynamic process optimization}, Author = {Biegler, L. T. and Cervantes, A. M. and and Waechter, A.}, Journal = {Chem. Eng. Sci.}, Year = {2002}, Number = {57}, Pages = {575--593}, Volume = {4}, Keywords = {collocation multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Biener1995, Title = {{M}athematisches {M}odell zur {B}e\-schrei\-bung des {W}achs\-tums- und {P}ro\-dukt\-bil\-dungs\-ver\-hal\-tens von {\em Streptomyces tendae\/} in einem {B}ioreaktor}, Author = {Biener, R.}, Institution = { ISR, Universit\"at Stuttgart}, Year = {1995}, Note = {Internal report}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bienstock2006, Title = {Approximating fractional packings and coverings in ${O}(1/\epsilon)$ iterations}, Author = {D. Bienstock and G. Iyengar}, Journal = {SIAM J. Comput.}, Year = {2006}, Number = {4}, Pages = {825--854}, Volume = {35}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Bigi2012, Title = {Gap functions and penalization for solving equilibrium problems with nonlinear constraints}, Author = {G. Bigi and M. Passacantando}, Journal = {Comp. Opt. Apps.}, Year = {2012}, Pages = {323--346}, Volume = {53}, File = {:Papers/Bigi2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.01} } @InCollection{Binder2001, Title = {{I}ntroduction to {M}odel {B}ased {O}ptimization of {C}hemical {P}rocesses on {M}oving {H}orizons}, Author = {T. Binder and L. Blank and H.G. Bock and R. Bulirsch and W. Dahmen and M. Diehl and T. Kronseder and W. Marquardt and J.P. Schl\"oder and O.v. Stryk}, Booktitle = {Online {O}ptimization of {L}arge {S}cale Systems: {S}tate of the {A}rt}, Publisher = {Springer}, Year = {2001}, Editor = {M. Gr\"otschel and S.O. Krumke and J. Rambau}, Pages = {295--340}, File = {Binder2001.pdf:Binder2001.pdf:PDF}, Keywords = {chemistry optimal control NMPC agbock}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.kuleuven.be/optec/OLD/research/subgroups/fastMPC/publications/Binder2001.php} } @InCollection{Binder2001a, Title = {{M}ultiscale {C}oncepts for {M}oving {H}orizon {O}ptimization}, Author = {T. Binder and L. Blank and W. Dahmen and W. Marquardt}, Booktitle = {Online {O}ptimization of {L}arge {S}cale Systems: {S}tate of the {A}rt}, Publisher = {Springer}, Year = {2001}, Editor = {M. Gr\"otschel and S.O. Krumke and J. Rambau}, Note = {download at: http://www.zib.de/dfg-echtzeit/Publikationen/Preprints/Preprint-01-17.html}, Pages = {341--361}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @PhdThesis{Bindlish1999, Title = {{M}odelling and {C}ontrol of {P}olymerization {P}rocesses}, Author = {R. Bindlish}, School = {University of Wisconsin-Madison}, Year = {1999}, File = {Bindlish1999.pdf:Bindlish1999.pdf:PDF}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bindlish2003, Title = {{T}arget linearization and model predictive control of polymerization processes}, Author = {R. Bindlish and J.B. Rawlings}, Journal = {{AIChE} Journal}, Year = {2003}, Month = {November}, Number = {11}, Pages = {2885--2899}, Volume = {49}, Keywords = {optimal control chemistry NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bindlish2003a, Title = {{P}arameter estimation for industrial polymerization processes}, Author = {R. Bindlish and J.B. Rawlings and R.E. Young}, Journal = {{AIChE} Journal}, Year = {2003}, Number = {8}, Pages = {2071--2078}, Volume = {49}, Keywords = {optimal control chemistry parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Birge1985, Title = {{D}ecomposition and {P}artitioning {M}ethods for {M}ultistage {S}tochastic {L}inear {P}rograms}, Author = {Birge, J.R.}, Journal = {Oper. Res.}, Year = {1985}, Number = {5}, Pages = {989--1007}, Volume = {33}, File = {:Papers/Birge1985.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.06.07} } @Article{Bischof1992, Title = {{ADIFOR} {G}enerating derivative codes from {F}ortran programs}, Author = {Bischof, C.H. and Carle, A. and Corliss, G. and Griewank, A. and Hovland, P.}, Journal = {Scientific Programming}, Year = {1992}, Pages = {11--29}, Volume = {1}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Bischof1994, Title = {{T}he {ADIFOR} 2.0 {S}ystem for the {A}utomatic {D}ifferentiation of {F}ortran 77 {P}rograms}, Author = {C.H. Bischof and A. Carle and P.M. Khademi and A. Mauer}, Institution = {Mathematics and Computer Science Division, Argonne National Laboratory}, Year = {1994}, Address = {Argonne, Ill.}, Note = {To appear in {IEEE} Computational Science \& Engineering.}, Number = {MCS--P481--1194}, Type = {Preprint}, Ad_tools = {ADIFOR}, Keywords = {automatic differentiation}, Owner = {quoctd}, Referred = {[Bischof1996UEw], [Bischof1996HAt], [Gay1996MAo], [Park1996ADa].}, Timestamp = {2013.08.23} } @InCollection{Bischof2000, Title = {Computing Derivatives of Computer Programs}, Author = {C.~H.~Bischof and H.~M.~B{\"u}cker}, Booktitle = {Modern Methods and Algorithms of Quantum Chemistry: Proceedings, Second Edition}, Publisher = {NIC-Directors}, Year = {2000}, Address = {J{\"u}lich}, Editor = {J. Grotendorst}, Pages = {315--327}, Series = {NIC Series}, Volume = {3}, Abstract = {Automatic differentiation is introduced as a powerful technique to compute derivatives of functions given in the form of a computer program in a high-level programming language such as Fortran, C, or C++. In contrast to traditional approaches such as handcoding of analytic expressions, numerical approximation by divided differences, or manipulation of symbolic algebraic expressions by computer algebra systems, automatic differentiation offers the following substantial benefits: it is accurate up to machine precision, efficient in terms of computational cost, applicable to a 1-line formula as well as to a 100,000-line code, and can be produced with minimal human effort.}, Ad_theotech = {General}, File = {Bischof2000.pdf:Bischof2000.pdf:PDF}, Notes = {Also available as preprint ANL/MCS--P813--0400, Argonne National Laboratory, Mathematics and Computer Science Division, USA, April 2000}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.fz-juelich.de/nic-series/Volume3/bischof.pdf} } @Book{Bishop2006, Title = {Pattern Recognition and Machine Learning}, Author = {Bishop, C.M.}, Publisher = {Springer New York}, Year = {2006}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Bishop2013, Title = {Model-based machine learning}, Author = {Bishop, Christopher M}, Journal = {Phil. Trans. Royal Soc. A}, Year = {2013}, Number = {1984}, Volume = {371}, File = {bishop2013model.pdf:bishop2013model.pdf:PDF}, Owner = {jmscarlett}, Publisher = {The Royal Society}, Timestamp = {2014.11.25} } @Article{Bittanti1984, Title = {{S}tability analysis of linear periodic system via the {L}yapunov equation}, Author = {S. Bittanti and P. Bolzern and P. Colaneri}, Journal = {Proc. 9th IFAC World Congress, Budapest, Hungary}, Year = {1984}, Pages = {169--172}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Bittanti1991, Title = {{T}he periodic {R}iccati {E}quation}, Author = {S. Bittanti and P. Colaneri and G. {De Nicolao}}, Booktitle = {The Riccati Equation}, Publisher = {Springer Verlag}, Year = {1991}, Editor = {Bittanti, Laub, Willems}, Keywords = {optimal control indirect methods}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bjork1970, Title = {{S}olutions of {V}andermonde {S}ystems of {E}quations}, Author = {Bj\:ork, A. and Pereyra, V.}, Journal = {Math. Prog.}, Year = {1970}, Pages = {893--903}, Volume = {24}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Blahut2004, Title = {Theory of remote image formation}, Author = {Blahut, R.}, Publisher = {Cambridge University Press}, Year = {2004}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Blanchard2011, Title = {Compressed Sensing: How Sharp Is the Restricted Isometry Property?}, Author = {J.D. Blanchard and C. Cartis and J. Tanne}, Journal = {SIAM Rev.}, Year = {2011}, Number = {1}, Pages = {105--125}, Volume = {53}, File = {:Papers/Blanchard2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Blondel2009, Title = {Polynomial-time computation of the joint spectral radius for some sets of nonnegative matrices}, Author = {V.D. Blondel and Y. Nesterov}, Journal = {SIAM J. Matrix Anal. App.}, Year = {2009}, Number = {3}, Pages = {865--876}, Volume = {31}, File = {:Papers/Blondel2009.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Blondel1997, Title = {NP-hardness of some linear control design problems}, Author = {V.D. Blondel and J.N. Tsitsiklis}, Journal = {SIAM J. on Control, Signals and Systems}, Year = {1997}, Number = {21}, Pages = {18--27}, Volume = {35}, File = {:Papers/Blondel1997.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.08} } @InProceedings{Blum2001, Title = {Learning from Labeled and Unlabeled Data Using Graph Mincuts}, Author = {Avrim Blum and Shuchi Chawla}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2001}, Pages = {19-26}, Publisher = {Morgan Kaufmann, San Francisco, CA}, Citeseerurl = {citeseer.ist.psu.edu/blum01learning.html}, File = {Statistical Learning\\blum01learning.pdf:Statistical Learning\\blum01learning.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2007.01.29} } @Article{Blum1994, Title = {From optimization and variational inequality to equilibrium problems}, Author = {E. Blum and W. Oettli}, Journal = {Math. Student}, Year = {1994}, Pages = {127--149}, Volume = {63}, Owner = {quoctd}, Timestamp = {2012.11.28} } @Article{Blumensath2013, Title = {Compressed Sensing With Nonlinear Observations and Related Nonlinear Optimization Problems}, Author = {Blumensath, T.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2013}, Month = {June}, Number = {6}, Pages = {3466-3474}, Volume = {59}, ISSN = {0018-9448}, Owner = {jmscarlett} } @Article{Blumensath2009, Title = {Iterative hard thresholding for compressed sensing}, Author = {Blumensath, T. and Davies, M.}, Journal = {App. Comp. Harmon. Anal.}, Year = {2009}, Number = {3}, Pages = {265--274}, Volume = {27}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{Blumensath2009a, Title = {Sampling theorems for signals from the union of finite-dimensional linear subspaces}, Author = {Blumensath, T. and Davies, M.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2009}, Number = {4}, Pages = {1872--1882}, Volume = {55}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Blumensath2008, Title = {Iterative thresholding for sparse approximations}, Author = {Blumensath, Thomas and Davies, Mike E}, Journal = {J. Fourier Anal. and Apps.}, Year = {2008}, Number = {5-6}, Pages = {629--654}, Volume = {14}, File = {blumensath2008iterative.pdf:blumensath2008iterative.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Bobkov1998, Title = {On modified logarithmic {S}obolev inequalities for {B}ernoulli and {P}oisson meausres}, Author = {Bobkov, S. G. and Ledoux, M.}, Journal = {J. Funct. Anal.}, Year = {1998}, Pages = {347--365}, Volume = {156}, Owner = {yhli}, Timestamp = {2014.02.11} } @InCollection{Bock1983, Title = {{R}ecent advances in parameter identification techniques for {ODE}}, Author = {Bock, H.G.}, Booktitle = {Numerical Treatment of Inverse Problems in Differential and Integral Equations}, Publisher = {Birk\-h\"au\-ser}, Year = {1983}, Address = {Boston}, Editor = {P. Deuflhard and E. Hairer}, File = {Bock1983.pdf:Bock1983.pdf:PDF}, Keywords = {agbock parameter estimation multiple shooting ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Bock1981, Title = {{N}umerical treatment of inverse problems in chemical reaction kinetics}, Author = {H.G. Bock}, Booktitle = {Modelling of Chemical Reaction Systems}, Publisher = {Springer}, Year = {1981}, Address = {Heidelberg}, Editor = {K.H. Ebert and P. Deufl\-hard and W. J\"ager}, Pages = {102--125}, Series = {Springer Series in Chemical Physics}, Volume = {18}, Keywords = {agbock parameter estimation multiple shooting chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Bock1987, Title = {{R}andwertproblemmethoden zur {P}arameteridentifizierung in {S}ystemen nichtlinearer {D}ifferentialgleichungen}, Author = {Bock, H.G.}, Publisher = {Universit\"at Bonn}, Year = {1987}, Address = {Bonn}, Series = {Bonner Ma\-the\-ma\-tische Schriften}, Volume = {183}, Keywords = {agbock parameter estimation multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bock1978, Title = {{N}umerical {S}olution of {N}onlinear {M}ultipoint {B}oundary {V}alue {P}roblems with {A}pplications to {O}ptimal {C}ontrol}, Author = {Bock, H.G.}, Journal = {Zeitschrift f\"ur {A}ngewandte {M}athematik und {M}echanik}, Year = {1978}, Pages = {407}, Volume = {58}, Key = {T407}, Keywords = {agbock optimal control multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @MastersThesis{Bock1974, Title = {{N}umerische {O}ptimierung zustandsbeschr\"ankter parameterabh\"angiger {P}rozesse mit linear auftretender {S}teuerung unter {A}nwendung der {M}ehrzielmethode}, Author = {Bock, H.G.}, School = {Universit\"at K\"oln}, Year = {1974}, Keywords = {agbock parameter estimation optimal control multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bock1999, Title = {{D}irect {M}ultiple {S}hooting {M}e\-thods for {C}ontrol and {O}ptimization of {DAE} in {C}hemical {E}ngineering}, Author = {H.G. Bock and I. Bauer and D.B. Leineweber and J.P. Schl\"oder}, Booktitle = {Scientific Computing in Chemical Engineering II}, Year = {1999}, Address = {Berlin}, Editor = {F. Keil and W. Mackens and H. Vo\ss and J. Werther}, Pages = {2--18}, Publisher = {Springer}, Volume = {2}, Key = {ISBN 3-540-65851-3}, Keywords = {agbock parameter estimation multiple shooting optimal control DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Bock2004, Title = {{SQP} {M}ethods with {I}nexact {J}acobians for {I}nequality {C}onstrained {O}ptimization}, Author = {H.G. Bock and M. Diehl and E. Kostina}, Institution = {Universit\"at Heidelberg}, Year = {2004}, Address = {Heidelberg}, Number = {04-XX}, Type = {IWR-Pre\-print}, Keywords = {agbock SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Bock2007, Title = {{C}onstrained {O}ptimal {F}eedback {C}ontrol of {S}ystems {G}overned by {L}arge {D}ifferential {A}lgebraic {E}quations}, Author = {Bock, H.G. and Diehl, M. and Kostina, E.A. and Schl\"oder, J.P.}, Booktitle = {Real-Time and Online PDE-Constrained Optimization}, Publisher = {{SIAM}}, Year = {2007}, Editor = {L. Biegler and O. Ghattas and M. Heinkenschloss and D. Keyes and B. van Bloemen Waanders}, Pages = {3--22}, Doi = {10.1137/1.9780898718935.ch1}, File = {Bock2007.pdf:Bock2007.pdf:PDF}, Keywords = {agbock optec optimal control NMPC DAE multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://epubs.siam.org/ebooks/siam/computational_science_and_engineering/cs03/cs03_ch1} } @InProceedings{Bock2000, Title = {{A} direct multiple shooting method for real-time optimization of nonlinear {DAE} processes}, Author = {Bock, H.G. and Diehl, M. and Leineweber, D.B. and Schl\"oder, J.P.}, Booktitle = {Nonlinear Predictive Control}, Year = {2000}, Address = {Basel Boston Berlin}, Editor = {F. Allg\"ower and A. Zheng}, Pages = {246--267}, Publisher = {Birkh\"auser}, Series = {Progress in Systems Theory}, Volume = {26}, Doi = {10.1007/978-3-0348-8407-5_14}, Key = {ISBN 3-7643-6297-9}, Keywords = {agbock optimal control NMPC DAE multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.springerlink.com/content/n4165265r2l5h6jn/} } @InProceedings{Bock1999a, Title = {{E}fficient direct multiple shooting in nonlinear model predictive control}, Author = {H.G. Bock and M. Diehl and D.B. Leineweber and J.P. Schl\"oder}, Booktitle = {Scientific Computing in Chemical Engineering II}, Year = {1999}, Address = {Berlin}, Editor = {F. Keil and W. Mackens and H. Vo\ss and J. Werther}, Pages = {218--227}, Publisher = {Springer}, Volume = {2}, Key = {ISBN 3-540-65851-3}, Keywords = {agbock optimal control NMPC DAE multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.springer.com/chemistry/book/978-3-540-65851-1} } @InProceedings{Bock2000a, Title = {{R}eal-time optimization and {N}onlinear {M}odel {P}redictive {C}ontrol of {P}rocesses governed by {D}ifferential-{A}lgebraic {E}quations}, Author = {Bock, H.G. and Diehl, M. and Schl\"oder, J.P. and Allg\"ower, F. and Findeisen, R. and Nagy, Z.}, Booktitle = {Int. Smp. Adv. Control Chem. Proc.}, Year = {2000}, Address = {Pisa}, Pages = {695--703}, Volume = {2}, Keywords = {agbock optimal control NMPC DAE multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://books.google.be/books/about/ADCHEM_2000_International_symposium_on_a.html?id=h332pwAACAAJ&redir_esc=y} } @Article{Bock2002, Title = {{P}ractical {S}hape {O}ptimization for {T}urbine and {C}ompressor {B}lades by the {U}se of {PRSQP} {M}ethods}, Author = {H.G. Bock and W. Egartner and W. Kappis and V. Schulz}, Journal = {Optimization and Engineering}, Year = {2002}, Number = {4}, Pages = {395--414}, Volume = {3}, Keywords = {agbock optimization DAE multiple shooting mechanics}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Bock1988, Title = {{N}umerical {S}olution of {C}onstrained {L}east {S}quares {B}oundary {V}alue {P}roblems in {D}ifferential-{A}lgebraic {E}quations}, Author = {H.G. Bock and E. Eich and J.P. Schl\"oder}, Booktitle = {Numerical Treatment of Differential Equations}, Publisher = {Teubner}, Year = {1988}, Address = {Leipzig}, Editor = {K. Strehmel}, Keywords = {agbock parameter estimation DAE multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Bock2000b, Title = {{O}n the {R}ole of {N}atural {L}evel {F}unctions to {A}chieve {G}lobal {C}onvergence for {D}amped {N}ewton {M}ethods.}, Author = {Bock, H.G. and Kostina, E.A. and Schl\"oder, J.P.}, Booktitle = {Sys. Modelling and Opt. Methods, Theory and Apps.}, Publisher = {Kluwer}, Year = {2000}, Editor = {M. Powell et al.}, File = {Bock2000b.pdf:Bock2000b.pdf:PDF}, Keywords = {agbock SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bock1984, Title = {{A} multiple shooting algorithm for direct solution of optimal control problems}, Author = {H.G. Bock and K.J. Plitt}, Booktitle = {Proc. World Cong. Budapest}, Year = {1984}, Pages = {242--247}, Publisher = {Pergamon Press}, File = {Bock1984.pdf:Bock1984.pdf:PDF}, Keywords = {agbock multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bock1981a, Title = {{N}umerical solution of retarded differential equations with state-dependent time lags}, Author = {Bock, H.G. and Schl\"oder, J.P.}, Journal = {{Zeitschrift f\"ur {A}ngewandte {M}athematik und {M}echanik}}, Year = {1981}, Pages = {269}, Volume = {61}, Keywords = {agbock ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bogdan2013, Title = {Statistical estimation and testing via the ordered L1 norm}, Author = {Bogdan, Malgorzata and Berg, Ewout van den and Su, Weijie and Candes, Emmanuel}, Journal = {arXiv preprint arXiv:1310.1969}, Year = {2013}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Boggs1995, Title = {{S}equential {Q}uadratic {P}rogramming}, Author = {P.T. Boggs and J.W. Tolle}, Journal = {Acta Numer.}, Year = {1995}, Pages = {1--51}, File = {Boggs1995.pdf:Boggs1995.pdf:PDF}, Keywords = {SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Bonilla2007, Title = {Kernel multi-task learning using task-specific features}, Author = {Edwin V. Bonilla and Felix V. Agakov and Christopher K. I. Williams}, Booktitle = {In Proceedings of the 11th International Conference on Artificial Intelligence and Statistics (AISTATS}, Year = {2007}, File = {:Statistical Learning/Multitask/bonilla07mtl.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.09.05} } @InProceedings{Bonilla2007a, Title = {Multi-task Gaussian Process Prediction}, Author = {Bonilla, Edwin V. and Chai, Kian Ming and Williams, Christopher}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2007}, Abstract = {In this paper we investigate multi-task learning in the context of Gaussian Processes (GP). We propose a model that learns a shared covariance function on input-dependent features and a ``free-form'' covariance matrix over tasks. This allows for good flexibility when modelling inter-task dependencies while avoiding the need for large amounts of data for training. We show that under the assumption of noise-free observations and a block design, predictions for a given task only depend on its target values and therefore a cancellation of inter-task transfer occurs. We evaluate the benefits of our model on two practical applications: a compiler performance prediction problem and an exam score prediction task. Additionally, we make use of GP approximations and properties of our model in order to provide scalability to large data sets.}, File = {bonilla07mtlgp.pdf:Statistical Learning/Multitask/bonilla07mtlgp.pdf:PDF}, Keywords = {Learning/Statistics & Optimisation}, Owner = {baldazen}, Timestamp = {2008.07.17}, Url = {http://eprints.pascal-network.org/archive/00003442/} } @Article{Bonilla2010, Title = {An automatic initialization procedure in parameter estimation problems with parameter-affine dynamic models}, Author = {Bonilla, J. and Diehl, M. and Logist, F. and De Moor, B. and Van Impe, J.}, Journal = {Comp. Chem. Eng.}, Year = {2010}, Number = {6}, Pages = {953--964}, Volume = {34}, Doi = {10.1016/j.compchemeng.2009.10.020}, File = {Bonilla2010.PDF:Bonilla2010.PDF:PDF}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0098135409002713} } @Article{Bonnans1994, Title = {{L}ocal {A}nalysis of {N}ewton-{T}ype {M}ethods for {V}ariational {I}nequalities and {N}onlinear {P}rogramming}, Author = {J.F. Bonnans}, Journal = {App. Math. Opt.}, Year = {1994}, Pages = {161--186}, Volume = {29}, File = {Bonnans1994.pdf:Bonnans1994.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2012.04.08} } @Book{Bonnans1997, Title = {{N}umerical {O}ptimization: {T}heoretical and {P}ractical {A}spects}, Author = {J.F. Bonnans and J.C. Gilbert and C. Lemarechal and C.A. Sagastizabal}, Publisher = {Springer-Verlag}, Year = {1997}, Owner = {quoctd}, Timestamp = {2014.04.08} } @Article{Bonnans2005, Title = {Perturbation analysis of second-order cone programming problems}, Author = {J.F. Bonnans and C.H. Ram\'{i}rez}, Journal = {Math. Program., Ser. B}, Year = {2005}, Pages = {205--227}, Volume = {104}, File = {:Papers/Bonnans2005.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.08} } @TechReport{Bonnans2002, Title = {{P}arametric optimization of hybrid car engines }, Author = {Bonnans, J. F. and Guilbaud, T. and Ketfi-Cherif, A. and Wissel, D. von and Sagastizabal, C. and Zidani, H.}, Institution = {INRIA/ Project SYDOCO}, Year = {2002}, Note = {http://www.inria.fr/rrrt/rr-4674.html}, Keywords = {hybrid optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bonsall1991, Title = {A general atomic decomposition theorem and Banach's closed range theorem}, Author = {Bonsall, FF}, Journal = {The Quarterly Journal of Mathematics}, Year = {1991}, Number = {1}, Pages = {9--14}, Volume = {42}, Owner = {jmscarlett}, Publisher = {Oxford Univ Press}, Timestamp = {2014.11.25} } @Book{Born1999, Title = {Principles of optics: electromagnetic theory of propagation, interference and diffraction of light}, Author = {Born, M. and Wolf, E.}, Publisher = {CUP Archive}, Year = {1999}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Borrelli2003, Title = {{A} {G}eometric {A}lgorithm for {M}ulti-{P}arametric {L}inear {P}rogramming}, Author = {Borrelli, F. and A. Bemporad and M. Morari }, Journal = {J. Opt. Theory and Apps.}, Year = {2003}, Number = {3}, Pages = {515--540}, Volume = {118}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Borwein2006a, Title = {Convex analysis and nonlinear optimization: theory and examples}, Author = {Borwein, J. and Lewis, A.}, Publisher = {Springer}, Year = {2006}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Bosch2000, Title = {{E}lementare {E}inf\"uhrung in die angewandte {S}tatistik}, Author = {K. Bosch}, Publisher = {Vieweg}, Year = {2000}, Address = {Wiesbaden}, Edition = {7}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Bosch1999, Title = {{E}lementare {E}inf\"uhrung in die {W}ahrscheinlichkeitsrechnung}, Author = {K. Bosch}, Publisher = {Vieweg}, Year = {1999}, Address = {Wiesbaden}, Edition = {7}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bot2012, Title = {A primal-dual splitting algorithm for finding zeros of sums of maximally monotone operators}, Author = {R.I. Bot and E.R. Csetnek and A. Heinrich}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Bot2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Bot2013, Title = {A double smoothing technique for solving unconstrained nondifferentiable convex optimization problems}, Author = {R.I. Bot and C. Hendrich}, Journal = {Comp. Opt. Apps.}, Year = {2013}, Pages = {1--24}, Volume = {xx}, File = {:Papers/Bot2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @InBook{Bottou1999, Title = {Online learning and stochastic approximations}, Author = {Bottou, L\'{e}on}, Chapter = {2}, Editor = {Saad, David}, Pages = {9--42}, Publisher = {Cambridge Univ. Press}, Year = {1999}, Address = {Cambridge, UK}, Owner = {yhli}, Timestamp = {2014.07.24} } @InProceedings{Bottou2010, Title = {Large-scale machine learning with stochastic gradient descent}, Author = {Bottou, L\'{e}on}, Booktitle = {Proc. COMPSTAT'2010}, Year = {2010}, Pages = {177--186}, Owner = {yhli}, Timestamp = {2014.07.23} } @InProceedings{Bottou2007, Title = {The tradeoffs of large scale learning}, Author = {Bottou, L\'{e}on and Bousquet, Oliver}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2007}, Owner = {yhli}, Timestamp = {2014.07.23} } @Article{Boucheron2005, Title = {Theory of classification: A survey of some recent advances}, Author = {Boucheron, St\'{e}phane and Bousquet, Olivier and Lugosi, G\'{a}bor}, Journal = {ESAIM: Probab. Stat.}, Year = {2005}, Month = nov, Pages = {323--375}, Volume = {9}, Owner = {yhli}, Timestamp = {2014.08.13} } @Book{Boucheron2013, Title = {Concentration Inequalities: A Nonasymptotic Theory of Independence}, Author = {Boucheron, St\'{e}phane and Lugosi, G\'{a}bor and Massart, Pascal}, Publisher = {Oxford Univ. Press}, Year = {2013}, Address = {Oxford}, Owner = {yhli}, Timestamp = {2014.02.11} } @InProceedings{Boufounos2008, Title = {1-Bit compressive sensing}, Author = {Boufounos, P.T. and Baraniuk, R.G.}, Booktitle = {Conf. on Inf. Sci. and Sys.}, Year = {2008}, Month = {March}, Owner = {jmscarlett} } @InProceedings{Boufounos2007, Title = {Sparse signal reconstruction from noisy compressive measurements using cross validation}, Author = {Boufounos, Petros and Duarte, Marco F. and Baraniuk, Richard G.}, Booktitle = {IEEE/SP Workshop Stat. Sig. Proc.}, Year = {2007}, Pages = {299--303}, Owner = {yhli}, Timestamp = {2014.07.09} } @Article{Bourgain2011, Title = {Explicit constructions of RIP matrices and related problems}, Author = {Bourgain, Jean and Dilworth, Stephen and Ford, Kevin and Konyagin, Sergei and Kutzarova, Denka and others}, Journal = {Duke Mathematical Journal}, Year = {2011}, Number = {1}, Pages = {145--185}, Volume = {159}, Owner = {jmscarlett}, Publisher = {Duke University Press}, Timestamp = {2014.11.25} } @TechReport{Bousquet, Title = {Introduction to Statistical Learning Theory}, Author = {Bousquet and Boucheron and Lugosi}, File = {Introduction to Statistical Learning Theory.pdf:Statistical Learning/Introduction to Statistical Learning Theory.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @PhdThesis{Bousquet2002, Title = {Concentration inequalities and empirical processes theory applied to the analysis of learning algorithms}, Author = {Bousquet, Olivier}, School = {Ecole Polytechnique}, Year = {2002}, Owner = {yhli}, Timestamp = {2014.07.25} } @Article{Bousquet2002a, Title = {Stability and generalization}, Author = {Bousquet, O. and Elisseeff, A.}, Journal = {J. Mach. Learn. Res.}, Year = {2002}, Pages = {499--526}, Volume = {2}, File = {bousquet2002stability.pdf:Statistical Learning/bousquet2002stability.pdf:PDF}, Owner = {baldassarre}, Publisher = {MIT Press Cambridge, MA, USA}, Timestamp = {2009.11.10} } @TechReport{Bousquet2001, Title = {Stability and generalization}, Author = {O. Bousquet and A. Elisseeff}, Institution = {Centre de Mathematiques Appliquees, Ecole Polytechnique}, Year = {2001}, File = {Statistical Learning\\bousquet01stability.pdf:Statistical Learning\\bousquet01stability.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2007.02.07}, Url = {citeseer.ist.psu.edu/bousquet01stability.html} } @Article{Bousquet2003, Title = {On the Complexity of Learning the Kernel Matrix}, Author = {Bousquet, O. and Herrmann, D. J. L.}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2003}, Citeulike-article-id = {2225124}, File = {bousquet03complexity.pdf:Statistical Learning/Kernel Learning/bousquet03complexity.pdf:PDF}, Keywords = {kernel, transductive}, Owner = {baldazen}, Priority = {2}, Publisher = {MIT Press}, Timestamp = {2008.02.13} } @InProceedings{Boutsidis2009, Title = {An improved approximation algorithm for the column subset selection problem}, Author = {Boutsidis, Christos and Mahoney, Michael W and Drineas, Petros}, Booktitle = {Proc. ACM-SIAM Symp. Discrete Algorithms}, Year = {2009}, Organization = {Society for Industrial and Applied Mathematics}, Pages = {968--977}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Boyd1994, Title = {Linear matrix inequalities in system and control theory}, Author = {S.P. Boyd and L.E. Ghaoui and E. Feron and V. Balakrishnan}, Editor = {SIAM studies in applied mathematics}, Publisher = {SIAM}, Year = {1994}, Volume = {14}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Boyd1993, Title = {Method of centers for minimizing generalized eigenvalues}, Author = {S. Boyd and L. El Ghaoui}, Journal = {Lin. Alg. Apps.}, Year = {1993}, Pages = {63--111}, Volume = {188}, File = {:Papers/Boyd1993.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @InProceedings{Boyd1993b, Title = {Solving interpolation problems via generalized eigenvalue minimization}, Author = {S. Boyd and L. El Ghaoui}, Booktitle = {Proc. Amer. Control Conf.}, Year = {1993}, Pages = {2647--2648}, File = {:Papers/Boyd1993b.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @InProceedings{Boyd1993a, Title = {Linear Matrix Inequalities in System and Control Theory}, Author = {S. Boyd and L. El Ghaoui and E. Feron and V. Balakrishnan}, Booktitle = {Allerton Conf. on Comm., Control and Comp.}, Year = {1993}, Pages = {237--246}, File = {:Papers/Boyd1993a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Boyd2007, Title = {A Tutorial on Geometric Programming}, Author = {S. Boyd and S.-J. Kim and L. Vandenberghe and A. Hassibi}, Journal = {Optimization and Engineering}, Year = {2007}, Number = {1}, Pages = {67--127}, Volume = {8}, File = {:Papers/Boyd2007.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Boyd2011, Title = {Distributed optimization and statistical learning via the alternating direction method of multipliers}, Author = {Boyd, Stephen and Parikh, Neal and Chu, Eric and Peleato, Borja and Eckstein, Jonathan}, Journal = {Found. Trends Mach. Learn.}, Year = {2011}, Number = {1}, Pages = {1--122}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.11.06} } @Book{Boyd2004, Title = {{C}onvex {O}ptimization}, Author = {S. Boyd and L. Vandenberghe}, Publisher = {University {P}ress}, Year = {2004}, Address = {Cambridge}, File = {Boyd2004.pdf:Boyd2004.pdf:PDF}, Keywords = {optimization, OPTEC-library}, Owner = {quoctd}, Timestamp = {2009.10.28} } @Book{Boyd2004a, Title = {Convex optimization}, Author = {Boyd, S.P. and Vandenberghe, L.}, Publisher = {Cambridge University Press}, Year = {2004}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Boyd2005, Title = {Least squares covariance matrix adjustment}, Author = {S. Boyd and L. Xiao}, Journal = {SIAM J. Matrix Anal. App.}, Year = {2005}, Number = {2}, Pages = {532--546}, Volume = {27}, File = {:Papers/Boyd2005.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.16} } @TechReport{Boyd2003, Title = {Subgradient methods}, Author = {S. Boyd and L. Xiao and A. Mutapcic}, Institution = {Stanford university}, Year = {2003}, Number = {EE392o}, Type = {Tech. Report.}, File = {:Papers/Boyd2003.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.10} } @InCollection{Boyle1986, Title = {A method for finding projections onto the intersection of convex sets in Hilbert spaces}, Author = {Boyle, J. and Dykstra, R.}, Booktitle = {Advances in order restricted statistical inference}, Publisher = {Springer}, Year = {1986}, Pages = {28--47}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Boyle2005, Title = {Dependent Gaussian processes}, Author = {Boyle, Phillip and Frean, Marcus}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2005}, Pages = {217--224}, Publisher = {MIT Press}, Abstract = {Gaussian processes are usually parameterised in terms of their covariance functions. However, this makes it difficult to deal with multiple outputs, because ensuring that the covariance matrix is positive definite is problematic. An alternative formulation is to treat Gaussian processes as white noise sources convolved with smoothing kernels, and to parameterise the kernel instead. Using this, we extend Gaussian processes to handle multiple, coupled outputs}, Citeulike-article-id = {3386079}, File = {:Statistical Learning/Multitask/boyle05dependentgp.pdf:PDF}, Keywords = {file-import-08-10-08}, Owner = {baldazen}, Posted-at = {2008-10-08 13:36:50}, Priority = {2}, Timestamp = {2009.01.28}, Url = {http://books.nips.cc/papers/files/nips17/NIPS2004\_0225.pdf} } @TechReport{Boyle2005a, Title = {Multiple output gaussian process regression}, Author = {P K Boyle and Dr Marcus Frean}, Year = {2005}, File = {:D\:\\BALDAZEN DOCS\\Scienza\\Statistical Learning\\Multitask\\boyle05multipleoutputgp.pdf:PDF}, Owner = {Luca}, Pages = {1 - 13}, Timestamp = {2009.02.02} } @TechReport{Brandt-Pollmann2003, Title = {{N}icht-\protect{Standard} \protect{Probleme} der optimalen \protect{Steuerung} in \protect{Chemie} und \protect{Biotechnologie}}, Author = {Brandt-Pollmann, U.}, Institution = {DECHEMA Jahrestagung der Biotechnologen}, Year = {2003}, Address = {M\"unchen}, Month = {April}, Keywords = {agbock optimal control biology chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Brandt-Pollmann2002, Title = {{O}ptimization of discontinuous dynamical models}, Author = {Brandt-Pollmann, U.}, Institution = {First International Conference on Optimization and Software}, Year = {2002}, Address = {Hangzhou, China}, Month = {December}, Keywords = {agbock optimal control DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Brandt-Pollmann2005, Title = {{R}eal-time nonlinear feedback control of pattern formation in (bio)chemical reaction--diffusion processes: {A} model study}, Author = {Brandt-Pollmann, U. and Lebiedz, D. and Diehl, M. and Sager, S. and Schl\"oder, J.P.}, Journal = {Chaos}, Year = {2005}, Note = {selected for online-publication in Virtual Journal of Biological Physics Research, July 15, 2005}, Pages = {033901}, Volume = {15}, File = {Brandt-Pollmann2005a.pdf:Brandt-Pollmann2005a.pdf:PDF}, Keywords = {agbock optimal control biology}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://chaos.aip.org/resource/1/chaoeh/v15/i3/p033901_s1} } @Article{Bregman1967, Title = {The relaxation method of finding the common point of convex sets and its application to the solution of problems in convex programming}, Author = {Bregman, L.}, Journal = {USSR computational mathematics and mathematical physics}, Year = {1967}, Number = {3}, Pages = {200--217}, Volume = {7}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{Breiman2001, Title = {Statistical Modeling: The Two Cultures}, Author = {Breiman, L.}, Journal = {Statistical Science}, Year = {2001}, Pages = {199-231}, Volume = {16}, File = {breiman2001statistical.pdf:Statistics\\breiman2001statistical.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Breiman1997, Title = {Predicting Multivariate Responses in Multiple Linear Regression}, Author = {Breiman, Leo and Friedman, Jerome H.}, Journal = {J. Royal Stat. Soc.}, Year = {1997}, Number = {1}, Pages = {3-54}, Volume = {59}, File = {Breiman97Predicting.pdf:/home/baldazen/Desktop/Scienza/Statistical Learning/Vector-valued/Breiman97Predicting.pdf:PDF}, Keywords = {curds, whey, multiple responses, regression}, Owner = {baldazen}, Timestamp = {2008.02.04} } @Book{Brenan1996, Title = {{N}umerical solution of initial-value problems in differential-algebraic equations}, Author = {Brenan, K.E. and Campbell, S.L. and Petzold, L.R.}, Publisher = {{SIAM}}, Year = {1996}, Address = {Philadelphia}, Note = {Classics in Applied Mathematics 14}, Keywords = {DAE}, Owner = {quoctd}, Timestamp = {2012.11.25} } @Article{Brezis1970, Title = {Semigroups of nonlinear contractions on convex sets}, Author = {Brezis, H. and Pazy, A.}, Journal = {J. Funct. Anal.}, Year = {1970}, Pages = {237--281}, Volume = {6}, Owner = {yhli}, Timestamp = {2014.04.24} } @Article{Briceno-Arias2011, Title = {A monotone + skew splitting model for composite monotone inclusions in duality}, Author = {L.M. Briceno-Arias and P.L. Combettes}, Journal = {SIAM J. Opt.}, Year = {2011}, Number = {4}, Pages = {1230--1250}, Volume = {21}, File = {:Papers/BricenoArias2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.02} } @TechReport{Brin, Title = {The Anatomy of a Large-Scale Hypertextual Web Search Engine}, Author = {Brin and Page}, Institution = {Stanford University, Computer Science Department}, File = {brin98anatomy.pdf:Statistical Learning/brin98anatomy.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @TechReport{Brina, Title = {The PageRank Citation Ranking: Bringing Order to the Web}, Author = {Brin and Page}, File = {PageRank98.pdf:Statistical Learning/PageRank98.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Book{Bronstein2000, Title = {{T}aschenbuch der {M}athematik}, Author = {Ilja N. Bronstein and Konstantin A. Semendjajew and Gerhard Musiol and Heiner M\"uhlig}, Publisher = {Harri Deutsch Verlag}, Year = {2000}, Address = {Frankfurt}, Keywords = {textbook miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Broyden1967, Title = {{Q}uasi-{N}ewton methods and their application to function minimization}, Author = {Broyden, C. G.}, Journal = {Math. Comp.}, Year = {1967}, Pages = {368--381}, Volume = {21}, File = {Broyden1967.pdf:Broyden1967.pdf:PDF}, Keywords = {optimization SQP}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bruckstein2009, Title = {From sparse solutions of systems of equations to sparse modeling of signals and images}, Author = {Bruckstein, A.M. and Donoho, D.L. and Elad, M.}, Journal = {SIAM Rev.}, Year = {2009}, Number = {1}, Pages = {34--81}, Volume = {51}, File = {bruckstein2009sparse.pdf:Statistical Learning\\SPARSITY\\bruckstein2009sparse.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Citeseer}, Timestamp = {2014.11.25} } @InProceedings{Brudnak2006, Title = {Vector-Valued Support Vector Regression}, Author = {Brudnak, M.}, Booktitle = {International Joint Conference on Neural Networks, 2006. IJCNN '06. }, Year = {2006}, Month = {16-21 July}, Pages = {1562--1569}, File = {VectorValuedSVM.pdf:/home/baldazen/Desktop/Scienza/Statistical Learning/Multiclass/VectorValuedSVM.pdf:PDF}, Owner = {baldazen}, Timestamp = {2007.10.15} } @Unpublished{Bruer2014, Title = {Time-data tradeoffs by agressive smoothing}, Author = {J. Bruer and S. J. Becker and V. Cevher and J. A. Tropp}, Note = {\emph{Conf. on Neur. Inf. Proc. Sys.}, to appear}, Year = {2014}, Owner = {jms265}, Timestamp = {2014.08.29} } @Article{Bruhn2005, Title = {Lucas/Kanade Meets Horn/Schunck: Combining Local and Global Optic Flow Methods}, Author = {Bruhn and Weickert and Schnorr}, Journal = {Int. J. Comp. Vision}, Year = {2005}, Pages = {211-231}, Volume = {61}, File = {bruhn-ijcv05c.pdf:VC/bruhn-ijcv05c.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.21} } @Book{Bryson1975, Title = {{A}pplied {O}ptimal {C}ontrol}, Author = {Bryson, A.E. and Ho, Y.-C.}, Publisher = {Wiley}, Year = {1975}, Address = {New York}, File = {Bryson1975.pdf:Bryson1975.pdf:PDF}, Keywords = {optimal control bang-bang optimality conditions indirect methods}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Buades2010, Title = {Image Denoising Methods. A New Nonlocal Principle}, Author = {A. Buades and B. Coll and J. M. Morel}, Journal = {SIAM Rev.}, Year = {2010}, Number = {1}, Pages = {113--147}, Volume = {52}, File = {:Papers/Buades2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Bubeck2012, Title = {Regret analysis of stochastic and nonstochastic multi-armed bandit problems}, Author = {Bubeck, S\'{e}bastien and Cesa-Bianchi, Nicol\`{o}}, Journal = {Found. Trends Mach. Learn.}, Year = {2012}, Number = {1}, Pages = {1--122}, Volume = {5}, Owner = {yhli}, Timestamp = {2014.11.11} } @InProceedings{Buchbinder2014, Title = {Submodular Maximization with Cardinality Constraints}, Author = {Buchbinder, N. and Feldman, M. and Naor, J. and Schwartz, R.}, Year = {2014}, Organization = {SIAM}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Buchbinder2012, Title = {A tight linear time (1/2)-approximation for unconstrained submodular maximization}, Author = {Buchbinder, N. and Feldman, M. and Naor, J. and Schwartz, R.}, Booktitle = {Foundations of Computer Science (FOCS), 2012 IEEE 53rd Annual Symposium on}, Year = {2012}, Organization = {IEEE}, Pages = {649--658}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Buckley1985, Title = {{D}esign of {D}istillation {C}olumn {C}ontrol {S}ystems}, Author = {P.S. Buckley and W.L. Luyben and J.P. Shunta}, Publisher = {Instrument Society of America}, Year = {1985}, Address = {New York}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Budrene1995, Title = {{D}ynamics of formation of symmetric patterns by chemotactic bacteria}, Author = {E.O. Budrene and H.C. Berg}, Journal = {Nature}, Year = {1995}, Pages = {49}, Volume = {376}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Budrene1991, Title = {{C}omplex patterns formed by motile cells of {E}scherichia coli}, Author = {E.O. Budrene and H.C. Berg}, Journal = {Nature}, Year = {1991}, Pages = {630}, Volume = {349}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Bulirsch1971, Title = {{D}ie {M}ehrzielmethode zur numerischen {L}\"osung von nichtlinearen {R}andwertproblemen und {A}ufgaben der optimalen {S}teuerung}, Author = {Bulirsch, R.}, Institution = {Carl-Cranz-Gesellschaft}, Year = {1971}, Address = {Oberpfaffenhofen}, Keywords = {multiple shooting optimal control indirect methods}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Bunea, Title = {AGGREGATION FOR GAUSSIAN REGRESSION}, Author = {Bunea and Tsybakov and Wegkamp}, Journal = {Ann. Stats.}, File = {Aggregation for Gaussian Regression.pdf:Statistical Learning/Aggregation for Gaussian Regression.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Conference{Bunea2006, Title = {Aggregation and Sparsity via l1 Penalized Least Squares}, Author = {Bunea and Tsybakov and Wegkamp}, Year = {2006}, File = {tsybakov_sparsity.pdf:Statistical Learning/tsybakov_sparsity.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Bunea2008, Title = {Honest variable selection in linear and logistic regression models via $\ell_1$ and $\ell_1 + \ell_2$ penalization}, Author = {Bunea, Florentina}, Journal = {Elec. J. Stats.}, Year = {2008}, Pages = {1153--1194}, Volume = {2}, Owner = {yhli}, Timestamp = {2014.06.10} } @Article{Bunea2010, Title = {Penalized least squares regression methods and applications to neuroimaging}, Author = {Bunea, F. and She, Y. and Ombao, H. and Gongvatana, A. and Devlin, K. and Cohen, R.}, Journal = {NeuroImage}, Year = {2010}, File = {bunea2010penalized.pdf:NEURO\\bunea2010penalized.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{Burke2002, Title = {Two numerical methods for optimizing matrix stability}, Author = {J.V. Burke and A.S. Lewis and M.L. Overton}, Journal = {Linear Algebra and Its Applications}, Year = {2002}, Pages = {117--145}, Volume = {351-352}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Burke2001, Title = {Optimizing Matrix Stability}, Author = {Burke, J.V., Lewis, A.S. and Overton, M.L.}, Journal = {Proc. Amer. Math. Soc.}, Year = {2001}, Pages = {1635--1642}, Volume = {129}, Owner = {quoctd}, Timestamp = {2012.07.20} } @Article{Byrd1989, Title = {A tool for the analysis of quasi-Newton methods with application to unconstrained minimization}, Author = {R. H. Byrd and J. Nocedal}, Journal = {SIAM J. Numer. Anal.}, Year = {1989}, Number = {3}, Pages = {727--739}, Volume = {26}, Owner = {quoctd}, Timestamp = {2013.07.16} } @Article{Byrd1994, Title = {{R}epresentations of quasi-{Newton} matrices and their use in limited memory methods}, Author = {R. H. Byrd and J. Nocedal and R. B. Schnabel}, Journal = {Math. Prog.}, Year = {1994}, Pages = {129--156}, Volume = {63}, Keywords = {SQP optimization computational}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Byrd2006, Title = {{KNITRO}: An integrated package for nonlinear optimization}, Author = {Richard H. Byrd and Jorge Nocedal and Richard A. Waltz}, Booktitle = {Large Scale Nonlinear Optimization}, Year = {2006}, Editor = {Gianni Pillo and Massimo Roma}, Pages = {35--59}, Publisher = {Springer Verlag}, File = {Byrd2006.pdf:Byrd2006.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Byrd1988, Title = {Parallel quasi-Newton methods for unconstrained optimization}, Author = {Byrd, Richard H. and Schnabel, Robert B. and Shultz, Gerald A.}, Journal = {Math. Prog.}, Year = {1988}, Pages = {273-306}, Volume = {42}, Affiliation = {Department of Computer Science University of Colorado 80309 Boulder CO USA}, File = {Byrd1988.pdf:Byrd1988.pdf:PDF}, ISSN = {0025-5610}, Issue = {1}, Keyword = {Mathematics and Statistics}, Keywords = {distributed optimization}, Owner = {quoctd}, Publisher = {Springer Berlin / Heidelberg}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/BF01589407} } @Article{Byrne2013, Title = {Alternating minimization as sequential unconstrained minimization - a survey}, Author = {C.L. Byrne}, Journal = {J. Opt. Theory and Apps.}, Year = {2013}, Pages = {1--13}, Volume = {xx}, File = {:Papers/Byrne2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Cai2010, Title = {A Singular Value Thresholding Algorithm for Matrix Completion}, Author = {Cai, J.F. and Cand{\`e}s, E.J. and Shen, Z.}, Journal = {SIAM J. Opt.}, Year = {2010}, Pages = {1956}, Volume = {20}, File = {cai2010singular.pdf:Optimization/cai2010singular.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Cai2014, Title = {Geometrizing local rates of convergence for high-dimensional linear inverse problems}, Author = {Cai, T. Tony and Liang, Tengyuan and Rakhlin, Alexander}, Year = {2014}, Note = {arXiv:1404.4408v2 [math.ST]}, Owner = {yhli}, Timestamp = {2014.11.17} } @Article{Cai2012, Title = {An improved first-order primal-dual algorithm with a new correction step}, Author = {X. Cai and . Han and L. Xu}, Journal = {J. Global Opt.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Cai2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Calafiore2004, Title = {Ellipsoidal bounds for uncertain linear equations and dynamical systems}, Author = {Giuseppe Calafiore and Laurent El Ghaoui}, Journal = {Automatica}, Year = {2004}, Number = {5}, Pages = {773 - 787}, Volume = {40}, Doi = {10.1016/j.automatica.2004.01.001}, File = {Calafiore2004.pdf:Calafiore2004.pdf:PDF}, ISSN = {0005-1098}, Keywords = {Uncertain linear equations}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0005109804000123} } @Article{Calvo1990, Title = {{O}n the zero stability of the variable order variable stepsize {BDF}- formulas.}, Author = {Calvo, M. and Grande, T. and Grigorieff, R.D.}, Journal = {Numer. Math. }, Year = {1990}, Number = {1}, Pages = {39--50}, Volume = {57}, Keywords = {DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Cameron2013, Title = {Regression Analysis of Count Data}, Author = {Cameron, A. Colin and Trivedi, Pravin K.}, Publisher = {Cambridge Univ. Press}, Year = {2013}, Address = {New York}, Edition = {second}, Owner = {yhli}, Timestamp = {2014.09.19} } @Article{Campi2001, Title = {Learning with prior information}, Author = {M.C. Campi and M. Vidyasagar}, Journal = {IEEE Trans. Aut. Control}, Year = {2001}, Pages = {1682-1695}, Volume = {46(11)}, File = {CampiVidyasagar01LearningPrior.pdf:/home/baldazen/Desktop/Scienza/Statistical Learning/CampiVidyasagar01LearningPrior.pdf:PDF}, Owner = {baldazen}, Timestamp = {2007.11.13} } @InProceedings{Campo1987, Title = {{R}obust model predictive control}, Author = {Campo, P. J. and Morari, M.}, Booktitle = {Proc. Amer. Control Conf.}, Year = {1987}, Pages = {1021--1026}, Keywords = {NMPC robust optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Candes2006, Title = {Modern statistical estimation via oracle inequalities}, Author = {Cand{\`{e}}s, Emmanuel J.}, Journal = {Acta Numer.}, Year = {2006}, Month = may, Pages = {257--325}, Volume = {15}, Owner = {yhli}, Timestamp = {2014.06.18} } @InProceedings{Candes2006b, Title = {Compressive sampling}, Author = {Cand{\`e}s, E. J.}, Booktitle = {Proc. Int. Congr. Mathematicians}, Year = {2006}, Pages = {1433--1452}, File = {candes2006compressive.pdf:COMPRESSIVE SENSING/candes2006compressive.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Candes2011, Title = {Robust principal component analysis?}, Author = {Cand\`{e}s, Emmanuel and Li, Xiaodong and Ma, Yi and Wright, John}, Journal = {J. Amer. Chem. Soc.}, Year = {2011}, Month = {may}, Number = {3}, Volume = {58}, Owner = {yhli}, Timestamp = {2014.07.04} } @Article{Candes2012a, Title = {Simple bounds for recovering low-complexity models}, Author = {E. Cand\`{e}s and B. Recht}, Journal = {Math. Program.}, Year = {2012}, Pages = {1--13}, Volume = {xx}, File = {:Papers/Candes2012a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Candes2009b, Title = {Exact matrix completion via convex optimization}, Author = {Cand\`{e}s, Emmanuel and Recht, Benjamin}, Journal = {Found. Comp. Math.}, Year = {2009}, Pages = {717--772}, Volume = {9}, Owner = {yhli}, Timestamp = {2014.07.01} } @Article{Candes2012, Title = {PhaseLift: Exact and Stable Signal Recovery from Magnitude Measurements via Convex Programming}, Author = {E.J. Cand\`{e}s and T. Strohmer and V. Voroninski}, Journal = {IEE Trans. Signal Processing}, Year = {2012}, Number = {5}, Pages = {2422--2432}, Volume = {60}, File = {:Papers/Candes2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.10} } @Article{Candes2008, Title = {The restricted isometry property and its implications for compressed sensing}, Author = {Cand\`{e}s, Emmanuel J.}, Journal = {C. R. Acad. Sci. Paris, Ser. I}, Year = {2008}, Pages = {589--592}, Volume = {346}, Owner = {yhli}, Timestamp = {2014.02.14} } @Article{Candes2013a, Title = {Phase retrieval from coded diffraction patterns}, Author = {Cand\`{e}s, Emmanuel J and Li, Xiaodong and Soltanolkotabi, Mahdi}, Journal = {preprint}, Year = {2013}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Candes2009, Title = {Near-ideal model selection by $\ell_1$ minimization}, Author = {Cand\`{e}s, Emmanuel J. and Plan, Yaniv}, Journal = {Ann. Stats.}, Year = {2009}, Number = {5A}, Pages = {2145--2177}, Volume = {37}, Owner = {yhli}, Timestamp = {2014.03.28} } @Article{Candes2006a, Title = {Robust uncertainty principles: Exact signal reconstruction from highly incomplete frequency information}, Author = {Cand\`{e}s, Emmanuel J. and Romberg, Justin and Tao, Terence}, Journal = {IEEE Trans. Inf. Theory}, Year = {2006}, Month = feb, Number = {2}, Pages = {489--509}, Volume = {52}, Owner = {yhli}, Timestamp = {2014.07.01} } @TechReport{Candes2000, Title = {Curvelets: A surprisingly effective nonadaptive representation for objects with edges}, Author = {Candes, E. and Donoho, D.}, Institution = {DTIC Document}, Year = {2000}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Candes2009a, Title = {Matrix completion with noise}, Author = {Candes, E.J. and Plan, Y.}, Journal = {Proc. IEEE}, Year = {2009}, File = {candes2009noisycompletion.pdf:Statistical Learning/MATRIX COMPLETION/candes2009noisycompletion.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.02.16} } @Article{Candes2013, Title = {PhaseLift: Exact and stable signal recovery from magnitude measurements via convex programming}, Author = {Candes, E. and Strohmer, T. and Voroninski, V.}, Journal = {Comms. on Pure and App. Math.}, Year = {2013}, Number = {8}, Pages = {1241--1274}, Volume = {66}, Owner = {jmscarlett}, Publisher = {Wiley Online Library}, Timestamp = {2014.11.25} } @Article{Candes2009c, Title = {The power of convex relaxation: Near-optimal matrix completion}, Author = {Candes, E.J. and Tao, T.}, Journal = {arXiv}, Year = {2009}, Volume = {903}, File = {candes2009power.pdf:Statistical Learning/MATRIX COMPLETION/candes2009power.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Citeseer}, Timestamp = {2014.11.25} } @Article{Candes2007, Title = {The {D}antzig selector: Statistical estimation when $p$ is much larger than $n$}, Author = {Candes, Emmanuel and Tao, Terence}, Journal = {Ann. Stats.}, Year = {2007}, Number = {6}, Pages = {2313--2351}, Volume = {35}, Owner = {yhli}, Timestamp = {2014.02.14} } @Article{Candes2005, Title = {Decoding by linear programming}, Author = {Candes, Emmanuel and Tao, Terence}, Journal = {IEEE Trans. Inf. Theory}, Year = {2005}, Month = dec, Number = {12}, Pages = {4203--4215}, Volume = {51}, Owner = {yhli}, Timestamp = {2014.07.24} } @Article{Candes2011a, Title = {Phase retrieval via matrix completion}, Author = {E. J. Candes and Y. Eldar and T. Strohmer and V. Voroninski}, Journal = {SIAM J. on Imaging Sciences}, Year = {2011}, Number = {1}, Pages = {199--225}, Volume = {6}, Owner = {quoctd}, Timestamp = {2014.04.22} } @Article{Candes2006c, Title = {Near-optimal signal recovery from random projections: Universal encoding strategies?}, Author = {Candes, Emmanuel J and Tao, Terence}, Journal = {IEEE Trans. Inf. Theory}, Year = {2006}, Number = {12}, Pages = {5406--5425}, Volume = {52}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Cao2003, Title = {{A}djoint {S}ensitivity {A}nalysis for {D}ifferential-{A}lgebraic {E}quations: {T}he {A}djoint {DAE} {S}ystem and its {N}umerical {S}olution}, Author = {Y. Cao and S. Li and L.R. Petzold and R. Serban}, Journal = {{SIAM} J. Sci. Comp.}, Year = {2003}, Number = {3}, Pages = {1076--1089}, Volume = {24}, Keywords = {DAE automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Capalbo2002, Title = {Randomness conductors and constant-degree lossless expanders}, Author = {Capalbo, Michael and Reingold, Omer and Vadhan, Salil and Wigderson, Avi}, Booktitle = {Proc. ACM Symp. Theory of computing}, Year = {2002}, Organization = {ACM}, Pages = {659--668}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @TechReport{Caponnetto2006, Title = {Optimal Rates for Regularization Operators in Learning Theory}, Author = {Andrea Caponnetto}, Institution = {Massachusetts Institute of Technology}, Year = {2006}, File = {Caponnetto_regop_TR(TR11).pdf:Statistical Learning/Caponnetto_regop_TR(TR11).pdf:PDF}, Keywords = {PCA, sparsity, sPCA}, Owner = {luca}, Timestamp = {2007.02.12} } @Article{Caponnetto2007, Title = {Optimal Rates for Regularized Least-Squares Algorithm}, Author = {Caponnetto, Andrea and De Vito, Ernesto}, Journal = {Found. Comp. Math.}, Year = {2007}, Number = {3}, Pages = {331--368}, Volume = {7}, Doi = {10.1007/s10208-006-0196-8}, File = {caponnetto2007optimalrates.pdf:Statistical Learning/caponnetto2007optimalrates.pdf:PDF;:Statistical Learning/caponnetto2007optimal.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @TechReport{Caponnetto2005, Title = {Fast Rates for Regularized Least-squares Algorithm}, Author = {Caponnetto, A. and De Vito, E.}, Institution = {CBCL - Massachusetts Institute of Technology}, Year = {2005}, Address = {Cambridge, MA}, Month = {April}, Type = {CBCL Paper 248/AI} # Memo # {2005-013}, File = {caponnetto2005fast.pdf:Statistical Learning/caponnetto2005fast.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.09.21} } @Article{Caponnetto2008, Title = {Universal Kernels for Multi-Task Learning}, Author = {Caponnetto, A. and Micchelli, C.A. and Pontil, M. and Ying, Y.}, Journal = {J. Mach. Learn. Res.}, Year = {2008}, Pages = {1615-1646}, Volume = {9}, Address = {Cambridge, MA, USA}, File = {:Statistical Learning/Vector-valued/CaponnettoPontil07UniversalKernels.pdf:PDF}, ISSN = {1533-7928}, Owner = {jmscarlett}, Publisher = {MIT Press}, Timestamp = {2014.11.25} } @TechReport{Caponnetto2006a, Title = {Adaptation for Regularization Operators in Learning Theory}, Author = {Andrea Caponnetto and Y. Yao}, Institution = {Massachusetts Institute of Technology}, Year = {2006}, File = {Caponnetto_adaptregop_TR(TR12).pdf:Statistical Learning/Caponnetto_adaptregop_TR(TR12).pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.12} } @Article{Caracotsios1985, Title = {{S}ensitivity analysis of initial value problems with mixed {ODE}s and algebraic equations}, Author = {M. Caracotsios and W.E. Stewart}, Journal = {Comp. Chem. Eng..}, Year = {1985}, Pages = {359--365}, Volume = {9}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Carlen1991, Title = {Superadditivity of {F}isher's information and logarithmic {S}obolev inequalities}, Author = {Carlen, Eric A.}, Journal = {J. Funct. Anal.}, Year = {1991}, Pages = {194--211}, Volume = {101}, Owner = {yhli}, Timestamp = {2014.02.13} } @Article{Carmeli2006, Title = {Vector valued reproducing kernel Hilbert spaces of integrable functions and Mercer theorem}, Author = {Carmeli, C. and De Vito, E. and Toigo, A.}, Journal = {Anal. and Apps.}, Year = {2006}, Pages = {377-408}, Volume = {4}, File = {mercer.pdf:Statistical Learning/Vector-valued/carmeli2006vvrkhs.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Carmeli2009, Title = {Vector Valued Reproducing Kernel Hilbert Spaces and Universality}, Author = {Carmeli, C. and De Vito, E. and Toigo, A. and Umanita', V.}, Journal = {Anal. and Apps.}, Year = {2009}, File = {carmeli2009vvrkhs.pdf:Statistical Learning/Vector-valued/carmeli2009vvrkhs.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.01.22} } @Article{Carneiro2007, Title = {Supervised Learning of Semantic Classes for Image Annotation and Retrieval}, Author = {Gustavo Carneiro and Antoni B. Chan and Pedro J. Moreno and Nuno Vasconcelos}, Journal = {IEEE Trans. Patt. Anal. and Mach. Intel.}, Year = {2007}, Number = {3}, Pages = {394-410}, Volume = {29}, Address = {Los Alamitos, CA, USA}, Doi = {http://doi.ieeecomputersociety.org/10.1109/TPAMI.2007.61}, File = {carneiro07retrieval.pdf:/home/baldazen/Desktop/Scienza/VC/carneiro07retrieval.pdf:PDF}, ISSN = {0162-8828}, Owner = {baldazen}, Publisher = {IEEE Computer Society}, Timestamp = {2008.01.29} } @Article{Carroll2009, Title = {Prediction and interpretation of distributed neural activity with sparse models}, Author = {Carroll, M.K. and Cecchi, G.A. and Rish, I. and Garg, R. and Rao, A.R.}, Journal = {NeuroImage}, Year = {2009}, Number = {1}, Pages = {112--122}, Volume = {44}, File = {carroll2009prediction.pdf:NEURO\\carroll2009prediction.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{Cartis2013, Title = {An exact tree projection algorithm for wavelets}, Author = {Cartis, C. and Thompson, A.}, Journal = {arXiv preprint arXiv:1304.4570}, Year = {2013}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Caruana1997, Title = {Multitask Learning}, Author = {Caruana, R.}, Journal = {Mach. Learn.}, Year = {1997}, Pages = {41-75}, Volume = {28}, File = {:Z\:\\myhome\\scienza\\Statistical Learning\\Multitask\\caruana97mtl.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Castellini2007, Title = {Internal Models of Reaching and Grasping}, Author = {Castellini, C. and Orabona, F. and Metta, G. and Sandini, G.}, Journal = {Adv. Robotics}, Year = {2007}, Volume = {21}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{Castro2006, Title = {Faster rates in regression via active learning}, Author = {Castro, Rui and Willett, Rebecca and Nowak, Robert}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2006}, Pages = {179}, Volume = {18}, File = {castro2006faster.pdf:ADAPTIVE SAMPLING/castro2006faster.pdf:PDF}, Owner = {jmscarlett}, Publisher = {MIT; 1998}, Timestamp = {2014.11.25} } @Article{Cauchy1847a, Title = {M{\'e}thode g{\'e}n{\'e}rale pour la r{\'e}solution des systemes d’{\'e}quations simultan{\'e}es}, Author = {Cauchy, A.}, Journal = {Comp. Rend. Sci. Paris}, Year = {1847}, Number = {1847}, Pages = {536--538}, Volume = {25}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Cendrillon2006, Title = {Optimal multiuser spectrum balancing for digital subscriber lines}, Author = {Cendrillon, R. and Wei Yu and Moonen, M. and Verlinden, J. and Bostoen, T.}, Journal = {IEEE Trans. Comms.}, Year = {2006}, Month = {may}, Number = {5}, Pages = { 922 - 933}, Volume = {54}, Doi = {10.1109/TCOMM.2006.873096}, ISSN = {0090-6778}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Censor2009, Title = {A note on the behavior of the randomized Kaczmarz algorithm of Strohmer and Vershynin}, Author = {Censor, Yair and Herman, Gabor T and Jiang, Ming}, Journal = {J. Fourier Anal. and Apps.}, Year = {2009}, Number = {4}, Pages = {431--436}, Volume = {15}, File = {censor2009note.pdf:censor2009note.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Cervantes1998, Title = {{L}arge-scale {DAE} optimization using a simultaneous {NLP} formulation}, Author = {Cervantes, A. and L.T. Biegler}, Journal = {{AIChE} Journal}, Year = {1998}, Number = {5}, Pages = {1038--1050}, Volume = {44}, Keywords = {optimal control collocation DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Cesa-Bianchi2006, Title = {Prediction, Learning, and Games}, Author = {Cesa-Bianchi, Nicol\`{o} and Lugosi, G\'{a}bor}, Publisher = {Cambridge Univ. Press}, Year = {2006}, Address = {Cambridge, UK}, Owner = {yhli}, Timestamp = {2014.07.25} } @InProceedings{Cevher2009a, Title = {Learning with compressible priors}, Author = {Cevher, Volkan}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2009}, Owner = {yhli}, Timestamp = {2014.06.10} } @InCollection{Cevher2009, Title = {Sparse Signal Recovery Using Markov Random Fields}, Author = {Cevher, Volkan and Marco F. Duarte and Chinmay Hegde and Baraniuk, Richard}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Publisher = {Curran Associates, Inc.}, Year = {2009}, Pages = {257-264}, Owner = {jmscarlett} } @InCollection{Cevher2008, Title = {Compressive Sensing for Background Subtraction}, Author = {Cevher, Volkan and Sankaranarayanan, Aswin and Duarte, Marco F. and Reddy, Dikpal and Baraniuk, Richard G. and Chellappa, Rama}, Booktitle = {Computer Vision ECCV}, Publisher = {Springer Berlin Heidelberg}, Year = {2008}, Pages = {155-168}, Volume = {5303}, ISBN = {978-3-540-88685-3}, Language = {English}, Owner = {jmscarlett} } @InProceedings{Chai2009, Title = {Multi-task Gaussian Process Learning of Robot Inverse Dynamics}, Author = {Chai, K. M. A. and Williams, C. K. I. and Klanke, S. and Vijayakumar, S.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2009}, File = {:Statistical Learning/Multitask/chai08mtgplearning.pdf:PDF}, Owner = {baldazen}, Timestamp = {2009.01.28} } @Article{Chamberlain1982, Title = {{T}he watchdog technique for forcing convergence in algorithms for constrained optimization}, Author = {Chamberlain, R. and Lemar{\'e}chal, C. and Pedersen, H. C. and Powell, M. J. D.}, Journal = {Math. Prog.}, Year = {1982}, Pages = {1--17}, Volume = {16}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Chambolle2004, Title = {An Algorithm for Total Variation Minimization and Applications}, Author = {Chambolle, Antonin}, Journal = {J. Math. Imaging Vis.}, Year = {2004}, Pages = {89--97}, Volume = {20}, Acmid = {964985}, Address = {Norwell, MA, USA}, Doi = {http://dx.doi.org/10.1023/B:JMIV.0000011325.36760.1e}, File = {chambolle2004algorithm.pdf:Optimization\\chambolle2004algorithm.pdf:PDF}, ISSN = {0924-9907}, Issue = {1-2}, Keywords = {denoising, image reconstruction, mean curvature motion, total variation, zooming}, Numpages = {9}, Owner = {jmscarlett}, Publisher = {Kluwer Academic Publishers}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1023/B:JMIV.0000011325.36760.1e} } @Article{Chambolle2009, Title = {On total variation minimization and surface evolution using parametric maximum flows}, Author = {Chambolle, Antonin and Darbon, J{\'e}r{\^o}me}, Journal = {Int. J. Comp. Vision}, Year = {2009}, Number = {3}, Pages = {288--307}, Volume = {84}, File = {chambolle2009total.pdf:chambolle2009total.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Chambolle1998, Title = {Nonlinear wavelet image processing: variational problems, compression, and noise removal through wavelet shrinkage}, Author = {Chambolle, A. and De Vore, R. and Lee, N. and Lucier, B.}, Journal = {IEEE Trans. Image Proc.}, Year = {1998}, Number = {3}, Pages = {319--335}, Volume = {7}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Chambolle2011, Title = {A first-order primal-dual algorithm for convex problems with applications to imaging}, Author = {Chambolle, Antonin and Pock, Thomas}, Journal = {J. Math. Imaging Vis.}, Year = {2011}, Pages = {120--145}, Volume = {40}, Owner = {yhli}, Timestamp = {2014.08.26} } @Article{Chan2011, Title = {{A}n {A}ugmented {L}agrangian {M}ethod for {T}otal {V}ariation {V}ideo {R}estoration}, Author = {S. H. Chan and R. Khoshabeh and K.B. Gibson and P. E. Gill and T.Q. Nguyen}, Journal = {IEEE Trans. Image Proc.}, Year = {2011}, Number = {11}, Pages = {3097--3111}, Volume = {20}, Owner = {quoctd}, Timestamp = {2014.01.31} } @Article{Chan1977, Title = {A Program for Computing the Condition Numbers of Matrix Eigenvalues Without Computing Eigenvectors}, Author = {S. P. Chan and R. Feldman and B. N. Parlett}, Journal = {{ACM} Trans. Math. Soft.}, Year = {1977}, Pages = {186-203}, Volume = {3}, File = {Statistical Learning\\chan76conditioning.pdf:Statistical Learning\\chan76conditioning.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2007.02.01} } @Article{Chan2001, Title = {Active contours without edges}, Author = {Chan, T.F. and Vese, L.A.}, Journal = {IEEE Trans. Image Proc.}, Year = {2001}, Month = {Feb.}, Number = {2}, Pages = {266--277}, Volume = {10}, Doi = {10.1109/83.902291}, File = {chan01active.pdf:VC/chan01active.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.25} } @TechReport{Chandar2008, Title = {A negative result concerning explicit matrices with the restricted isometry property}, Author = {Chandar, Venkat}, Year = {2008}, Owner = {yhli}, Timestamp = {2014.07.02} } @Article{Chandrasekaran2013, Title = {Computational and statistical tradeoffs via convex relaxation}, Author = {Chandrasekaran, Venkat and Jordan, Michael I.}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2013}, Number = {13}, Pages = {E1181-E1190}, Volume = {110}, Eprint = {http://www.pnas.org/content/110/13/E1181.full.pdf+html}, Owner = {jmscarlett} } @Article{Chandrasekaran2012a, Title = {Latent variable graphical model selection via convex optimization}, Author = {V. Chandrasekaran and P.A. Parrilo and A.S. Willsky}, Journal = {Ann. Stats.}, Year = {2012}, Number = {4}, Pages = {1935--1967}, Volume = {40}, Owner = {quoctd}, Timestamp = {2013.01.17} } @Article{Chandrasekaran2012, Title = {The convex geometry of linear inverse problems}, Author = {Chandrasekaran, Venkat and Recht, Benjamin and Parrilo, Pablo A. and Willsky, Alan S.}, Journal = {Found. Comp. Math.}, Year = {2012}, Pages = {805--849}, Volume = {12}, Owner = {yhli}, Timestamp = {2014.01.29} } @Article{Chandrasekaran2011, Title = {Rank-sparsity incoherence for matrix decomposition}, Author = {Chandrasekaran, Venkat and Sanghavi, Sujay and Parrilo, Pablo A. and WIllsky, Alan S.}, Journal = {SIAM J. Opt.}, Year = {2011}, Number = {2}, Pages = {572--596}, Volume = {21}, Owner = {yhli}, Timestamp = {2014.08.11} } @Article{Chang2011, Title = {{LIBSVM}: a library for support vector machines}, Author = {C.-C. Chang and C.-J. Lin}, Journal = {{ACM} Trans. Int. Sys. Tech.}, Year = {2011}, Number = {27}, Pages = {1--27}, Volume = {2}, Owner = {quoctd}, Timestamp = {2014.04.25} } @Article{Charnes1959, Title = {{C}hance {C}onstrained {P}rogramming}, Author = {Charnes, A. and W.W. Cooper}, Journal = {Management Sci.}, Year = {1959}, Number = {1}, Pages = {73--78}, Volume = {6}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Chazan1970, Title = {A Nongradient and Parallel Algorithm for Unconstrained Minimization}, Author = {D. Chazan and W. L. Miranker}, Journal = {SIAM Journal on Control}, Year = {1970}, Number = {2}, Pages = {207-217}, Volume = {8}, Doi = {10.1137/0308015}, Keywords = {distributed optimization}, Owner = {quoctd}, Publisher = {SIAM}, Timestamp = {2013.08.23}, Url = {http://link.aip.org/link/?SJC/8/207/1} } @Article{Chen2012, Title = {Quantized kernel least mean square algorithm}, Author = {Chen, Badong and Zhao, Songlin and Zhu, Pingping and Pr\'{i}ncipe, Jos\'{e}}, Journal = {IEEE Trans. Neur. Net. Learn. Syst.}, Year = {2012}, Month = jan, Number = {1}, Pages = {22--32}, Volume = {23}, Owner = {yhli}, Timestamp = {2014.06.23} } @Article{Chen2006, Title = {Consistency of Multiclass Empirical Risk Minimization Methods Based on Convex Loss}, Author = {Chen, D.R. and Sun, T.}, Journal = {J. Mach. Learn. Res.}, Year = {2006}, Pages = {2447}, Volume = {7}, File = {chen2006consistency.pdf:Statistical Learning/Multiclass/chen2006consistency.pdf:PDF}, Owner = {jmscarlett}, Publisher = {MIT Press}, Timestamp = {2014.11.25} } @Article{Chen1994, Title = {A proximal-based decomposition method for convex minimization problems}, Author = {G. Chen and M. Teboulle}, Journal = {Math. Program.}, Year = {1994}, Pages = {81--101}, Volume = {64}, File = {:Papers/Chen1994.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Chen1993, Title = {Convergence analysis of a proximal-like minimization algorithm using {B}regman functions}, Author = {Chen, Gong and Teboulle, Marc}, Journal = {SIAM J. Opt.}, Year = {1993}, Month = aug, Number = {3}, Pages = {538--543}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.04.23} } @Book{Chen1997, Title = {{S}tability and {R}obustness {C}onsiderations in {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {Chen, H.}, Publisher = {VDI Verlag}, Year = {1997}, Address = {D\"usseldorf}, Series = {Fortschr.-Ber. VDI Reihe 8 Nr. 674}, Keywords = {NMPC robust optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Chen1998b, Title = {{A} quasi-infinite horizon nonlinear model predictive control scheme with guaranteed stability}, Author = {H. Chen and F. Allg\"ower}, Journal = {Automatica}, Year = {1998}, Number = {10}, Pages = {1205--1218}, Volume = {34}, File = {Chen1998.pdf:Chen1998.pdf:PDF}, Keywords = {NMPC robust optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Chen1998c, Title = {{A} computationally attractive nonlinear predictive control scheme with guaranteed stability for stable systems}, Author = {H. Chen and F. Allg\"ower}, Journal = {J. Proc. Control}, Year = {1998}, Number = {5-6}, Pages = {475--485}, Volume = {8}, File = {Chen1998a.pdf:Chen1998a.pdf:PDF}, Keywords = {NMPC optimal control control theory}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Chen1995, Title = {{N}onlinear predictive control of a benchmark {CSTR}}, Author = {Chen, H. and Kremling, A. and Allg\"ower, F.}, Booktitle = ecc95, Year = {1995}, Address = {Rome}, Pages = {3247--3252}, Keywords = {NMPC robust optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Chen1997a, Title = {{A} game theoretic approach to nonlinear robust receding horizon control of constrained systems}, Author = {Chen, H. and Scherer, C.W. and Allg\"ower, F.}, Booktitle = accc, Year = {1997}, Address = {Albuquerque}, Pages = {3073--3077}, Keywords = {NMPC robust optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Chen2014, Title = {Translation-invariant shrinkage/thresholding of group sparse signals}, Author = {Chen, Po-Yu and Selesnick, Ivan W}, Journal = {Signal Processing}, Year = {2014}, Pages = {476--489}, Volume = {94}, File = {chen2014translation.pdf:chen2014translation.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{Chen1998d, Title = {Atomic decomposition by basis pursuit}, Author = {Chen, S. and Donoho, D. and Saunders, M.}, Journal = {SIAM J. Sci. Comp.}, Year = {1998}, Number = {1}, Pages = {33--61}, Volume = {20}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Chen2000, Title = {{M}odel {P}redictive {C}ontrol of {N}onlinear {S}ystems: {C}omputational {D}elay and {S}tability}, Author = {Chen, W. and Ballance, D.J. and O'Reilly, J.}, Journal = {IEEE Trans. Aut. Control}, Year = {2000}, Number = {4}, Pages = {387--394}, Volume = {147}, Keywords = {NMPC robust optimal control}, Language = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Chen2012a, Title = {Complexity of unconstrained $L_2- L_p$ minimization}, Author = {X. Chen and D. Ge and Z. Wang and Y. Ye}, Journal = {Math. Program.}, Year = {2012}, Pages = {1--13}, Volume = {xx}, File = {:Papers/Chen2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.13} } @Article{Chen2012c, Title = {Smoothing proximal gradient method for general structured sparse regression}, Author = {Chen, Xi and Lin, Qihang and Kim, Seyoung and Carbonell, Jaime G and Xing, Eric P}, Journal = {Ann. App. Stats.}, Year = {2012}, Number = {2}, Pages = {719--752}, Volume = {6}, File = {chen2012smoothing.pdf:Optimization/chen2012smoothing.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Institute of Mathematical Statistics}, Timestamp = {2014.11.25} } @InProceedings{Chen2011, Title = {Smoothing Proximal Gradient Method for General Structured Sparse Learning}, Author = {Xi Chen and Qihang Lin and Seyoung Kim and Jaime G. Carbonell and Eric P. Xing}, Booktitle = {UAI'11}, Year = {2011}, Pages = {105-114}, File = {chen2011smoothing.pdf:Statistical Learning\\SPARSITY\\chen2011smoothing.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Chen2009, Title = {Accelerated Gradient Method for Multi-task Sparse Learning Problem}, Author = {Xi Chen and Weike Pan and Kwok, J.T. and Carbonell, J.G.}, Booktitle = {Data Mining, 2009. ICDM '09. Ninth IEEE International Conference on}, Year = {2009}, Month = {dec.}, Pages = {746 -751}, Doi = {10.1109/ICDM.2009.128}, ISSN = {1550-4786}, Keywords = {L-1-infinity regularized optimization problem;Nesterov method;accelerated gradient method;bioinformatics;computer vision;feature selection problem;first order black-box method;multitask sparse learning problem;optimal first order black-box method;text classification;gradient methods;learning (artificial intelligence);}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Chen2012b, Title = {Sparse solutions to random standard quadratic optimization problems}, Author = {X. Chen and J. Peng and S. Zhang}, Journal = {Math. Program.}, Year = {2012}, Pages = {1--21}, Volume = {xx}, File = {:Papers/Chen2012a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Chen2013, Title = {Bregman operator splitting with variable stepsize for total variation image reconstruction}, Author = {Y. Chen and W. Hager and M. Yashtini and X. Ye and H. Zhang}, Journal = {Comp. Opt. Apps.}, Year = {2013}, Pages = {1--26}, Volume = {xx}, File = {:Papers/Chen2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Chen2013a, Title = {Optimal primal-dual methods for a class of saddle-point problems}, Author = {Y. Chen and G. Lan and Y. Ouyang}, Journal = {Tech. Report.}, Year = {2013}, Pages = {1--25}, Volume = {xx}, Owner = {quoctd}, Timestamp = {2013.07.03} } @Article{Chen2013b, Title = {Speech Enhancement By Sparse, Low-Rank, And Dictionary Spectrogram Decomposition}, Author = {Chen, Z. and and Ellis, D.}, Journal = {IEEE Workshop Apps. SIg. Proc. Audio and Acoustics}, Year = {2013}, File = {chen2013speech.pdf:chen2013speech.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2013.10.22} } @Article{Chen1995a, Title = {A parallel quasi-Newton algorithm for unconstrained optimization}, Author = {Chen, Z. and Fei, P. and Zheng, H.}, Journal = {Computing}, Year = {1995}, Pages = {125-133}, Volume = {55}, Affiliation = {Wuhan University Department of Mathematics 430072 Wuhan Hebei P. R. C. 430072 Wuhan Hebei P. R. C.}, File = {Chen1995a.pdf:Chen1995a.pdf:PDF}, ISSN = {0010-485X}, Issue = {2}, Keyword = {Computer Science}, Keywords = {distributed optimization}, Owner = {quoctd}, Publisher = {Springer Wien}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/BF02238097} } @Unpublished{Cheng2006, Title = {Multi-linear maps and {T}aylor's theorem in higher dimensions}, Author = {Cheng, Steve}, Year = {2006}, Owner = {yhli}, Timestamp = {2014.09.23}, Url = {http://www.gold-saucer.org/math/} } @Article{Chernoff1981, Title = {A note on an inequality involving the normal distribution}, Author = {Chernoff, Herman}, Journal = {Ann. Probab.}, Year = {1981}, Number = {3}, Pages = {533--535}, Volume = {9}, Owner = {yhli}, Timestamp = {2014.02.13} } @Article{Chi2011, Title = {Sensitivity to Basis Mismatch in Compressed Sensing}, Author = {Yuejie Chi and Scharf, L.L. and Pezeshki, A and Calderbank, AR.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2011}, Month = {May}, Number = {5}, Pages = {2182-2195}, Volume = {59}, ISSN = {1053-587X}, Owner = {jmscarlett} } @Book{Chidume2009, Title = {Geometric properties of {B}anach spaces and nonlinear iterations}, Author = {Chidume, Charles}, Publisher = {Springer-Verlag}, Year = {2009}, Address = {London}, Owner = {yhli}, Timestamp = {2014.04.11} } @Book{Chiles1999, Title = {Geostatistics: Modeling Spatial Uncertainty}, Author = {Jean-Paul Chilès and Pierre Delfiner}, Publisher = {Wiley}, Year = {1999}, Address = {New York}, Owner = {baldazen}, Pages = {69}, Timestamp = {2008.06.26} } @Article{Choi1999, Title = {{I}nstantaneous control of backward-facing-step flows}, Author = { H. Choi and M. Hinze and K. Kunisch}, Journal = {App. Numer. Math.}, Year = {1999}, Pages = {133--158}, Volume = {31}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Choi1993, Title = {{F}eedback control for unsteady flow and its application to the stochastic {B}urgers equation}, Author = {H. Choi and R. Temam and P. Moin and J. Kim}, Journal = {J. Fluid Mech.}, Year = {1993}, Pages = {509--543}, Volume = {253}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Choset2005, Title = {Principles of Robot Motion: Theory, Algorithms and Implementation}, Author = {H. Choset and W. Burgard and S. Hutchinson and G. Kantor and L.E. Kavraki and K. Lynch and S. Thrun}, Publisher = {MIT Press}, Year = {2005}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Chouzenoux2013, Title = {Variable metric forward-backward algorithm for minimizing the sum of a differentiable function and a convex function}, Author = {E. Chouzenoux and J.-C. Pesquet and A. Repetti}, Journal = {Tech. Report.}, Year = {2013}, Pages = {1--22}, Owner = {quoctd}, Timestamp = {2013.03.20} } @Article{Christensen1987, Title = {{O}ptimal control of {B}inary {B}atch {D}istillation with {R}ecycled {W}aste {C}ut}, Author = {F.M. Christensen and S.B. Jorgensen}, Journal = {Chem. Eng. Journal}, Year = {1987}, Pages = {57--64}, Volume = {34}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Christofides2012, Title = {Distributed model predictive control: {A} tutorial review and future research directions}, Author = {P.D. Christofides and R. Scattolini and D. Munoz de la Pena and J. Liu}, Journal = {Comp. Chem. Eng.,}, Year = {2012}, Pages = {1--12}, Owner = {quoctd}, Timestamp = {2013.08.30} } @Book{Cioranescu1990, Title = {Geometry of {B}anach spaces, duality mappings and nonlinear problems}, Author = {Cioranescu, Ioana}, Publisher = {Kluwer Acad. Publ.}, Year = {1990}, Address = {Dordrecht}, Owner = {yhli}, Timestamp = {2014.04.24} } @Article{Clemencon2008, Title = {Ranking and empirical minimization of {U}-statistics}, Author = {Cl\'{e}men\c{c}on, St\'{e}phan and Lugosi, G\'{a}bor and Vayatis, Nicolas}, Journal = {Ann. Stats.}, Year = {2008}, Number = {2}, Pages = {844--874}, Volume = {36}, Owner = {yhli}, Timestamp = {2014.03.13} } @Article{Cohen1978, Title = {Optimization by decomposition and coordination: {A} unified approach}, Author = {G. Cohen}, Journal = {IEEE Trans. Aut. Control}, Year = {1978}, Number = {2}, Pages = {222--232}, Volume = {AC-23}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Cohen2008, Title = {The Generalized Maximum Coverage Problem }, Author = {Reuven Cohen and Liran Katzir}, Journal = {Information Processing Letters }, Year = {2008}, Number = {1}, Pages = {15 - 22}, Volume = {108}, Doi = {http://dx.doi.org/10.1016/j.ipl.2008.03.017}, File = {:cohen2008generalized.pdf:PDF}, ISSN = {0020-0190}, Keywords = {Maximum coverage}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://www.sciencedirect.com/science/article/pii/S0020019008000896} } @Article{Cohen2007, Title = {Feature Selection via Coalitional Game Theory}, Author = {Cohen, Shay and Dror, Gideon and Ruppin, Eytan}, Journal = {Neural Comp.}, Year = {2007}, Number = {7}, Pages = {1939-1961}, Volume = {19}, Abstract = {We present and study the contribution-selection algorithm (CSA), a novel algorithm for feature selection. The algorithm is based on the multiperturbation shapley analysis (MSA), a framework that relies on game theory to estimate usefulness. The algorithm iteratively estimates the usefulness of features and selects them accordingly, using either forward selection or backward elimination. It can optimize various performance measures over unseen data such as accuracy, balanced error rate, and area under receiver-operator-characteristic curve. Empirical comparison with several other existing feature selection methods shows that the backward elimination variant of CSA leads to the most accurate classification results on an array of data sets.}, Eprint = {http://neco.mitpress.org/cgi/reprint/19/7/1939.pdf}, File = {cohen07feature.pdf:Statistical Learning\\SPARSITY\\cohen07feature.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.04.04}, Url = {http://neco.mitpress.org/cgi/content/abstract/19/7/1939} } @Article{Coifman2006, Title = {Diffusion Maps}, Author = {Coifman, Lafon}, Journal = {App. Comp. Harmon. Anal.}, Year = {2006}, Pages = {5-30}, Volume = {21}, File = {CoifmanLafon06 Diffusion Maps.pdf:Statistical Learning/CoifmanLafon06 Diffusion Maps.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Coifman2006a, Title = {Diffusion Wavelets}, Author = {Coifman, Maggioni}, Journal = {App. Comp. Harmon. Anal.}, Year = {2006}, Pages = {53-94}, Volume = {21}, File = {CoifmanMaggioni06Diffusion wavelets.pdf:Statistical Learning/CoifmanMaggioni06Diffusion wavelets.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Coifman2006b, Title = {Geometric harmonics: A novel tool for multiscale out-of-sample extension of empirical functions}, Author = {Ronald R. Coifman and Stéphane Lafon}, Journal = {App. Comp. Harmon. Anal.}, Year = {2006}, Pages = {31-52}, Volume = {21}, File = {CoifmanLafon06GeometricHarmonics.pdf:Statistical Learning/Manifold/CoifmanLafon06GeometricHarmonics.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @Article{Coleman1982, Title = {{N}on-linear programming via an exact penalty function: {A}symptotic {A}nalysis}, Author = {Coleman, T.F. and Conn, A.R.}, Journal = {Math. Prog.}, Year = {1982}, Pages = {123--136}, Volume = {24}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Coleman1984, Title = {{E}stimation of sparse {J}acobian matrices and graph coloring problems}, Author = {Coleman, T.F. and Mor\'e, J.J.}, Journal = {{SIAM} J. Numer. Anal.}, Year = {1984}, Pages = {187--209}, Volume = {20}, Keywords = {computational}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Coleman1998, Title = {{T}he efficient computation of sparse {J}acobian matrices}, Author = {Coleman, T.F. and Verma, A.}, Journal = {{SIAM} J. Sci. Comp.a}, Year = {1998}, Number = {4}, Pages = {1210--1233}, Volume = {19}, Keywords = {computational}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Combettes2004, Title = {Solving monotone inclusions via compositions of nonexpansive averaged operators}, Author = {P. Combettes}, Journal = {Optimization}, Year = {2004}, Number = {5--6}, Pages = {475--504}, Volume = {53}, File = {:Papers/Combettes2004.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Article{Combettes2010, Title = {Dualization of signal recovery problems}, Author = {Combettes, P.L. and D{\~u}ng, {\DJ}. and V{\~u}, B.C.}, Journal = {Set-Valued and Variational Analysis}, Year = {2010}, Pages = {1--32}, File = {combettes2010dualization.pdf:Optimization\\combettes2010dualization.pdf:PDF;:/Users/baldassarre/Dropbox/Scienza/Optimization/combettes2010dualization.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @InBook{Combettes2011, Title = {{F}ixed-{P}oint {A}lgorithms for {I}nverse {P}roblems in {S}cience and {E}ngineering}, Author = {P. Combettes and J.-C. Pesquet}, Chapter = {{P}roximal {S}plitting {M}ethods in {S}ignal {P}rocessing}, Editor = {H. H. Bauschke and R. S. Burachik and P. L. Combettes and V. Elser and D. R. Luke and H. Wolkowicz}, Pages = {185--212}, Publisher = {Springer-Velarg}, Year = {2011}, Owner = {quoctd}, Timestamp = {2014.09.29} } @Article{Combettes2011b, Title = {Proximity for sums of composite functions}, Author = {Patrick L. Combettes and Dinh Dung and Bang Cong Vu}, Journal = {J. Math. Anal. Apps.}, Year = {2011}, Number = {2}, Pages = {680 - 688}, Volume = {380}, Doi = {10.1016/j.jmaa.2011.02.079}, File = {combettes2011proximity.pdf:Optimization\\combettes2011proximity.pdf:PDF}, ISSN = {0022-247X}, Keywords = {Best approximation, Convex optimization, Duality, Image recovery, Proximity operator, Proximal splitting algorithm, Elastic net}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://www.sciencedirect.com/science/article/pii/S0022247X11002137} } @InCollection{Combettes2011a, Title = {Proximal Splitting Methods in Signal Processing}, Author = {Combettes, Patrick L. and Pesquet, Jean-Christophe}, Booktitle = {Fixed-Point Algorithms for Inverse Problems in Science and Engineering}, Publisher = {Springer New York}, Year = {2011}, Editor = {Bauschke, Heinz H. and Burachik, Regina S. and Combettes, Patrick L. and Elser, Veit and Luke, D. Russell and Wolkowicz, Henry}, Note = {10.1007/978-1-4419-9569-8_10}, Pages = {185-212}, Series = {Springer Optimization and Its Applications}, Volume = {49}, Affiliation = {Laboratoire Jacques-Louis Lions – UMR CNRS 7598, UPMC Université Paris 06, 75005 Paris, France}, File = {combettes2011proximal.pdf:Optimization\\combettes2011proximal.pdf:PDF}, ISBN = {978-1-4419-9569-8}, Keyword = {Mathematics and Statistics}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1007/978-1-4419-9569-8_10} } @Article{Combettes2008, Title = {A proximal decomposition method for solving convex variational inverse problems}, Author = {P. L. Combettes and J.-C. Pesquet}, Journal = {Inverse Problems}, Year = {2008}, Number = {6}, Pages = {065014}, Volume = {24}, File = {:Papers/Combettes2008.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.02} } @Article{Combettes2007, Title = {A Douglas--Rachford splitting approach to nonsmooth convex variational signal recovery}, Author = {Combettes, Patrick L and Pesquet, J-C}, Journal = {IEEE J. Sel. Topics Sig. Proc.}, Year = {2007}, Number = {4}, Pages = {564--574}, Volume = {1}, File = {combettes2007douglasrachford.pdf:Optimization/combettes2007douglasrachford.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Combettes2014, Title = {Variable metric forward-backward splitting with applications to monotone inclusions in duality}, Author = {P. L. Combettes and B. C. Vu}, Journal = {Optimization}, Year = {2014}, Number = {9}, Pages = {1289--1318}, Volume = {63}, Owner = {quoctd}, Timestamp = {2014.07.31} } @Article{Combettes2005, Title = {Signal recovery by proximal forward-backward splitting}, Author = {P. L. Combettes and V. R. Wajs}, Journal = {Multiscale Model. Simul.}, Year = {2005}, Pages = {1168--1200}, Volume = {4}, Owner = {quoctd}, Timestamp = {2013.07.17} } @Article{Cominetti1997, Title = {Coupling the Proximal Point Algorithm with Approximation Methods}, Author = {Cominetti, R.}, Journal = {J. Opt. Theory and Apps.}, Year = {1997}, Note = {10.1023/A:1022621905645}, Pages = {581-600}, Volume = {95}, File = {cominetti1997coupling.pdf:Optimization\\cominetti1997coupling.pdf:PDF}, ISSN = {0022-3239}, Issue = {3}, Keyword = {Mathematics and Statistics}, Owner = {jmscarlett}, Publisher = {Springer Netherlands}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1023/A:1022621905645} } @Article{Comon2008, Title = {Symmetric tensors and symmetric tensor rank}, Author = {Comon, Pierre and Golub, Gene and Lim, Lek-Heng and Mourrain, Bernard}, Journal = {SIAM Journal on Matrix Anal. and Apps.}, Year = {2008}, Number = {3}, Pages = {1254--1279}, Volume = {30}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Condat2013, Title = {A Primal?Dual Splitting Method for Convex Optimization Involving Lipschitzian, Proximable and Linear Composite Terms}, Author = {L. Condat}, Journal = {J. Opt. Theory and Apps.}, Year = {2013}, Pages = {460--479}, Volume = {158}, Owner = {quoctd}, Timestamp = {2014.04.08} } @Article{Conforti1995, Title = {Convergence and numerical results for a parallel asynchronous quasi-Newton method}, Author = {Conforti, D. and Musmanno, R.}, Journal = {J. Opt. Theory and Apps.}, Year = {1995}, Pages = {293-310}, Volume = {84}, File = {Conforti1995.pdf:Conforti1995.pdf:PDF}, ISSN = {0022-3239}, Issue = {2}, Keyword = {Computer Science}, Keywords = {distributed optimization}, Owner = {quoctd}, Publisher = {Springer Netherlands}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/BF02192116} } @Article{Cong2012, Title = {On the Convergence Properties of Non-Euclidean Extragradient Methods for Variational Inequalities with Generalized Monotone Operators}, Author = {D.D. Cong and G. Lan}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Cong2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Congalidis1989, Title = {{F}eedforward and {F}eedback {C}ontrol of a {S}olution {C}opolymerization {R}eactor}, Author = {Congalidis, J.P. and Richards, J.R. and Harmon Ray, W.}, Journal = {{AIChE} Journal}, Year = {1989}, Pages = {891--907}, Volume = {35}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Conn1991, Title = {A globally convergent augmented {L}angrangian algorithm for optimization with general constraints and simple bounds}, Author = {A.R. Conn and N.I.M. Gould and P.L. Toint}, Journal = {SIAM J. Opt.}, Year = {1991}, Number = {2}, Pages = {545--572}, Volume = {28}, File = {:Papers/Conn1991.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Book{Connejo2006, Title = {{D}ecomposition {T}echniques in {M}athematical {P}rogramming: {E}ngineering and {S}cience {A}pplications}, Author = {A.J. Connejo and R. M\'{i}nguez and E. Castillo and R. Garc\'{i}a-Bertrand}, Publisher = {Springer-Verlag}, Year = {2006}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Consortium2009, Title = {The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.}, Author = {F. A. N. T. O. M. Consortium and Harukazu Suzuki and Alistair R R Forrest and Erik van Nimwegen and Carsten O Daub and Piotr J Balwierz and Katharine M Irvine and Timo Lassmann and Timothy Ravasi and Yuki Hasegawa and Michiel J L de Hoon and Shintaro Katayama and Kate Schroder and Piero Carninci and Yasuhiro Tomaru and Mutsumi Kanamori-Katayama and Atsutaka Kubosaki and Altuna Akalin and Yoshinari Ando and Erik Arner and Maki Asada and Hiroshi Asahara and Timothy Bailey and Vladimir B Bajic and Denis Bauer and Anthony G Beckhouse and Nicolas Bertin and Johan Björkegren and Frank Brombacher and Erika Bulger and Alistair M Chalk and Joe Chiba and Nicole Cloonan and Adam Dawe and Josee Dostie and Pär G Engström and Magbubah Essack and Geoffrey J Faulkner and J. Lynn Fink and David Fredman and Ko Fujimori and Masaaki Furuno and Takashi Gojobori and Julian Gough and Sean M Grimmond and Mika Gustafsson and Megumi Hashimoto and Takehiro Hashimoto and Mariko Hatakeyama and Susanne Heinzel and Winston Hide and Oliver Hofmann and Michael Hörnquist and Lukasz Huminiecki and Kazuho Ikeo and Naoko Imamoto and Satoshi Inoue and Yusuke Inoue and Ryoko Ishihara and Takao Iwayanagi and Anders Jacobsen and Mandeep Kaur and Hideya Kawaji and Markus C Kerr and Ryuichiro Kimura and Syuhei Kimura and Yasumasa Kimura and Hiroaki Kitano and Hisashi Koga and Toshio Kojima and Shinji Kondo and Takeshi Konno and Anders Krogh and Adele Kruger and Ajit Kumar and Boris Lenhard and Andreas Lennartsson and Morten Lindow and Marina Lizio and Cameron Macpherson and Norihiro Maeda and Christopher A Maher and Monique Maqungo and Jessica Mar and Nicholas A Matigian and Hideo Matsuda and John S Mattick and Stuart Meier and Sei Miyamoto and Etsuko Miyamoto-Sato and Kazuhiko Nakabayashi and Yutaka Nakachi and Mika Nakano and Sanne Nygaard and Toshitsugu Okayama and Yasushi Okazaki and Haruka Okuda-Yabukami and Valerio Orlando and Jun Otomo and Mikhail Pachkov and Nikolai Petrovsky and Charles Plessy and John Quackenbush and Aleksandar Radovanovic and Michael Rehli and Rintaro Saito and Albin Sandelin and Sebastian Schmeier and Christian Schönbach and Ariel S Schwartz and Colin A Semple and Miho Sera and Jessica Severin and Katsuhiko Shirahige and Cas Simons and George St Laurent and Masanori Suzuki and Takahiro Suzuki and Matthew J Sweet and Ryan J Taft and Shizu Takeda and Yoichi Takenaka and Kai Tan and Martin S Taylor and Rohan D Teasdale and Jesper Tegnér and Sarah Teichmann and Eivind Valen and Claes Wahlestedt and Kazunori Waki and Andrew Waterhouse and Christine A Wells and Ole Winther and Linda Wu and Kazumi Yamaguchi and Hiroshi Yanagawa and Jun Yasuda and Mihaela Zavolan and David A Hume and Riken Omics Science Center and Takahiro Arakawa and Shiro Fukuda and Kengo Imamura and Chikatoshi Kai and Ai Kaiho and Tsugumi Kawashima and Chika Kawazu and Yayoi Kitazume and Miki Kojima and Hisashi Miura and Kayoko Murakami and Mitsuyoshi Murata and Noriko Ninomiya and Hiromi Nishiyori and Shohei Noma and Chihiro Ogawa and Takuma Sano and Christophe Simon and Michihira Tagami and Yukari Takahashi and Jun Kawai and Yoshihide Hayashizaki}, Journal = {Nat Genet}, Year = {2009}, Month = {May}, Number = {5}, Pages = {553--562}, Volume = {41}, Abstract = {Using deep sequencing (deepCAGE), the FANTOM4 study measured the genome-wide dynamics of transcription-start-site usage in the human monocytic cell line THP-1 throughout a time course of growth arrest and differentiation. Modeling the expression dynamics in terms of predicted cis-regulatory sites, we identified the key transcription regulators, their time-dependent activities and target genes. Systematic siRNA knockdown of 52 transcription factors confirmed the roles of individual factors in the regulatory network. Our results indicate that cellular states are constrained by complex networks involving both positive and negative regulatory interactions among substantial numbers of transcription factors and that no single transcription factor is both necessary and sufficient to drive the differentiation process.}, Doi = {10.1038/ng.375}, File = {:BIO/fantom09transnet.pdf:PDF}, Institution = {RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.}, Owner = {baldassarre}, Pii = {ng.375}, Pmid = {19377474}, Timestamp = {2009.05.11}, Url = {http://dx.doi.org/10.1038/ng.375} } @InProceedings{Conte2012, Title = {{Computational Aspects of Distributed Optimization in Model Predictive Control}}, Author = {C. Conte and T.H. Summers and M.N. Zeilinger and M. Morari and C.N. Jones}, Booktitle = {Conference on Decision and Control (CDC)}, Year = {2012}, Address = {Maui, HI, USA}, Month = dec, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://control.ee.ethz.ch/index.cgi?page=publications;action=details;id=4192} } @InCollection{Cook1984, Title = {A polynomial-time test for total dual integrality in fixed dimension}, Author = {Cook, William and Lov{\'a}sz, L{\'a}szl{\'o} and Schrijver, Alexander}, Booktitle = {Mathematical programming at Oberwolfach II}, Publisher = {Springer}, Year = {1984}, Pages = {64--69}, __markedentry = {[Marwa:]}, Owner = {Marwa}, Timestamp = {2014.12.13} } @Article{Corless1996, Title = {On the {L}ambert {$W$} function}, Author = {Corless, R. M. and Gonnet, G. H. and Hare, D. E. G. and Jeffrey, D. J. and Knuth, D. E.}, Journal = {Adv. Comput. Math.}, Year = {1996}, Pages = {329--359}, Volume = {5}, Owner = {yhli}, Timestamp = {2014.08.25} } @Book{Cormen2001a, Title = {Introduction To Algorithms}, Author = {Cormen, T.H. and Leiserson, C.E. and Rivest, R.L. and Stein, C.}, Publisher = {MIT Press}, Year = {2001}, Bdsk-url-1 = {http://books.google.ch/books?id=NLngYyWFl%5C_YC}, ISBN = {9780262032933}, Lccn = {00103127}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://books.google.ch/books?id=NLngYyWFl\_YC} } @Book{Cormen2001, Title = {Introduction to algorithms}, Author = {Cormen, T. and Leiserson, C. and Rivest, R. and Stein, C. and others}, Publisher = {MIT press Cambridge}, Year = {2001}, Volume = {2}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Correa2004, Title = {A global algorithm for nonlinear semidefinite programming}, Author = {R. Correa and H. Ramirez C}, Journal = {SIAM J. Opt.}, Year = {2004}, Number = {1}, Pages = {303--318.}, Volume = {15}, Owner = {quoctd}, Timestamp = {2012.04.07} } @TechReport{Correa2002, Title = {{A} {G}lobal {A}lgorithm for {N}onlinear {S}emidefinite {P}rogramming}, Author = {Correa, R. and Ramirez C., H.}, Institution = {INRIA-Rocquencourt}, Year = {2002}, Number = {RR-4672}, Keywords = {global optimization semidefinite}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Cortes2009, Title = {Learning non-linear combinations of kernels}, Author = {Cortes, C. and Mohri, M. and Rostamizadeh, A.}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2009}, Pages = {396--404}, Volume = {22}, File = {cortes2009learning.pdf:Statistical Learning\\Kernel Learning\\cortes2009learning.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Cover2001, Title = {Elements of Information Theory}, Author = {Thomas M Cover and Joy A Thomas}, Publisher = {John Wiley \& Sons, Inc.}, Year = {2001}, Booktitle = {Elements of Information Theory}, ISBN = {9780471200611}, Owner = {jmscarlett} } @Book{Cox1996, Title = {{I}deals, {V}arieties, and {A}lgorithms : {A}n {I}ntroduction to {C}omputational {A}lgebraic {G}eometry and {C}ommutative {A}lgebra}, Author = {Cox, D.A. and Little, J. and O'Shea, D.}, Publisher = {Springer}, Year = {1996}, Address = {Telos}, ISBN = {0387946802}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Crammer2001, Title = {On the Algorithmic Implementation of Multiclass Kernel-based Vector Machines}, Author = {Koby Crammer and Yoram Singer}, Journal = {J. Mach. Learn. Res.}, Year = {2001}, Pages = {265-292}, Volume = {2}, File = {crammer01algorithmic.pdf:Statistical Learning/Multiclass/crammer01algorithmic.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @InProceedings{Crammer2000, Title = {On the Learnability and Design of Output Codes for Multiclass Problems}, Author = {Koby Crammer and Yoram Singer}, Booktitle = {Computational Learing Theory}, Year = {2000}, Pages = {35-46}, File = {crammer00learnability.pdf:/home/baldazen/Desktop/Scienza/Statistical Learning/Multiclass/crammer00learnability.pdf:PDF}, Owner = {baldazen}, Timestamp = {2007.11.13}, Url = {citeseer.ist.psu.edu/crammer00learnability.html} } @Book{Cremer1979, Title = {{C}armina {M}athematica und andere poetische {J}ugends\"unden}, Author = {H. Cremer}, Publisher = {Verlag J.A. Mayer}, Year = {1979}, Address = {Aachen}, Edition = {6}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Cristianini2000, Title = {An introduction to support Vector Machines: and other kernel-based learning methods}, Author = {Cristianini, N. and Shawe-Taylor, J.}, Publisher = {Cambridge University Press}, Year = {2000}, Owner = {baldassarre}, Timestamp = {2009.10.21} } @Article{Crouse1998, Title = {Wavelet-based statistical signal processing using hidden Markov models}, Author = {Crouse, M. and Nowak, R. and Baraniuk, R.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {1998}, Number = {4}, Pages = {886--902}, Volume = {46}, File = {crouse1998wavelet.pdf:crouse1998wavelet.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Crouzeix1984, Title = {{T}he convergence of variable-stepsize, variable-formula, multistep methods}, Author = {Crouzeix, M. and Lisbona, F.J.}, Journal = {{SIAM} J. Numer. Anal.}, Year = {1984}, Number = {3}, Pages = {512--534}, Volume = {21}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Cruse2002, Title = {{O}ptimizing {A}daptive {C}alorimetric {M}odel {P}redictive {C}ontrol of a {B}enchmark {S}emi-{B}atch {R}eaction {P}rocess}, Author = {A. Cruse and M. Marquardt and A. Helbig and J.-S. Kussi}, Booktitle = {Proc. IFAC World Cong. Aut. Control}, Year = {2002}, Keywords = {NMPC optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Cryer1972, Title = {{O}n the instability of high order backward-difference multistep methods}, Author = {Cryer, C.W.}, Journal = {BIT}, Year = {1972}, Pages = {17--25}, Volume = {12}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Csurka2004, Title = {Visual Categorization with Bag of Keypoints}, Author = {Csurka, G. and Dance, C.R. and Fan, L. and Bray, C.}, Booktitle = {Workshop on Statistical Learning in Computer Vision, ECCV}, Year = {2004}, Organization = {Citeseer}, Pages = {22}, Volume = {1}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{Cucker2002, Title = {Best Choices for Regularization Parameters in Learning Theory: On the Bias-Variance Problem}, Author = {Cucker and Smale}, Journal = {Found. Comp. Math.}, Year = {2002}, Pages = {413-428}, Volume = {4}, File = {Statistical Learning\\CuckerSmale02BestChoices.pdf:Statistical Learning\\CuckerSmale02BestChoices.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2007.02.07} } @Article{Cucker2001, Title = {On The Mathematical Foundations Of Learning}, Author = {Felipe Cucker and Steve Smale}, Journal = {Bull. Amer. Math. Soc}, Year = {2001}, Pages = {1-49}, Volume = {39}, File = {CuckerSmale01Foundations.pdf:Statistical Learning/CuckerSmale01Foundations.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.07} } @Article{Curtis1974, Title = {{O}n the estimation of sparse {J}acobian matrices}, Author = {Curtis, A.R. and Powell, M.J.D. and Reid, J.K.}, Journal = {J. Inst. Math. Apps.}, Year = {1974}, Pages = {117--119}, Volume = {13}, Keywords = {computational}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Cuthrell1989, Title = {{S}imultaneous optimization and solution me\-thods for batch reactor profiles}, Author = {Cuthrell, J.E. and Biegler, L.T.}, Journal = {Comp. Chem. Eng.}, Year = {1989}, Number = {1/2}, Pages = {49--62}, Volume = { 13}, Keywords = {optimal control chemistry collocation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Cutkosky1989, Title = {On grasp choice, grasp models and the design of hands for manufacturing tasks}, Author = {Cutkosky, M.}, Journal = {IEEE Trans. Robotics and Automation}, Year = {1989}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{D.Chakrabarty2014, Title = {Provable Submodular Minimization using Wolfe's Algorithm}, Author = {D. Chakrabarty, P. Jain, P. Kothari}, Journal = {Neur. Inf. Proc. Sys. (NIPS)}, Year = {2014}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{DAmbra1999, Title = {Predicting Multivariate Responses in Non-Linear Regression}, Author = {D'Ambra, L. and Lombardo, R.}, Booktitle = {Contributed paper of ISI99, Helsinki (Finland)}, Year = {1999}, File = {:Statistical Learning/Vector-valued/dambra99multivariate.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.11.25} } @Article{Dahl2008, Title = {Covariance selection for nonchordal graphs via chordal embedding}, Author = {Dahl, J. and Vandenberghe, L. and Roychowdhury, V.}, Journal = {Opt. Methods and Softw.}, Year = {2008}, Number = {4}, Pages = {501--520}, Volume = {23}, Owner = {jmscarlett}, Publisher = {Taylor \& Francis}, Timestamp = {2014.11.25} } @Article{Dahlquist1956, Title = {{C}onvergence and stability in numerical integration of ordinary differential equations}, Author = {Dahlquist, G.}, Journal = {Math. Scand.}, Year = {1956}, Pages = {33--53}, Volume = {4}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Dai2003, Title = {On the asymptotic behavior of some new gradient methods}, Author = {Y.H. Dai and R. Fletcher}, Year = {2003}, Number = {NA/212}, Type = {Numerical Analysis Report}, File = {:Papers/Dai2003.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Dai2002, Title = {R-linear convergence of the Barzilai and Borwein gradient method}, Author = {Dai, Y. and Liao, L.}, Journal = {IMA J. Numer. Anal.}, Year = {2002}, Number = {1}, Pages = {1-10}, Volume = {22}, Abstract = {Combined with non-monotone line search, the Barzilai and Borwein (BB) gradient method has been successfully extended for solving unconstrained optimization problems and is competitive with conjugate gradient methods. In this paper, we establish the R-linear convergence of the BB method for any-dimensional strongly convex quadratics. One corollary of this result is that the BB method is also locally R-linear convergent for general objective functions, and hence the stepsize in the BB method will always be accepted by the non?monotone line search when the iterate is close to the solution.}, Doi = {10.1093/imanum/22.1.1}, Eprint = {http://imajna.oxfordjournals.org/content/22/1/1.full.pdf+html}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://imajna.oxfordjournals.org/content/22/1/1.abstract} } @Article{Dalalyan2013, Title = {Learning Heteroscedastic Models by Convex Programming under Group Sparsity}, Author = {A. S. Dalalyan and M. Hebiri and K. Meziani and J. Salmon}, Journal = {Proc. Int. Conf. Mach. Learn.}, Year = {2013}, Pages = {1--8}, Owner = {quoctd}, Timestamp = {2013.07.17} } @Article{Dalcin2008, Title = {{MPI} for {P}ython: {P}erformance improvements and {MPI-2} extensions}, Author = {Dalc\'{\i}n, Lisandro and Paz, Rodrigo and Storti, Mario and D'El\'{\i}a, Jorge}, Journal = {J. Parallel Distr. Comp.}, Year = {2008}, Month = may, Number = {5}, Pages = {655--662}, Volume = {68}, Acmid = {1360729}, Address = {Orlando, FL, USA}, Doi = {10.1016/j.jpdc.2007.09.005}, ISSN = {0743-7315}, Issue_date = {May, 2008}, Keywords = {High-level languages, MPI, Message passing, Parallel Python}, Numpages = {8}, Owner = {quoctd}, Publisher = {Academic Press, Inc.}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1016/j.jpdc.2007.09.005} } @Article{Danskin1966, Title = {The Theory of Max-Min, with Applications}, Author = {Danskin, J.}, Journal = {SIAM Journal on Applied Mathematics}, Year = {1966}, Number = {4}, Pages = {641-664}, Volume = {14}, Doi = {10.1137/0114053}, Eprint = {http://epubs.siam.org/doi/pdf/10.1137/0114053}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://epubs.siam.org/doi/abs/10.1137/0114053} } @Book{Danskin1967, Title = {The theory of Max-Min and its application to weapons allocation problems}, Author = {Danskin, John M.}, Publisher = {Springer-Verlag, Berlin, New York}, Year = {1967}, Catalogue-url = { http://nla.gov.au/nla.cat-vn2047560 }, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Das2012a, Title = {Selecting Diverse Features via Spectral Regularization}, Author = {Das, A. and Dasgupta, A. and Kumar, R.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2012}, Pages = {1592--1600}, File = {das2012selecting.pdf:das2012selecting.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Das2011, Title = {Submodular meets spectral: Greedy algorithms for subset selection, sparse approximation and dictionary selection}, Author = {Das, A. and Kempe, D.}, Journal = {arXiv preprint arXiv:1102.3975}, Year = {2011}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Daubechies2004, Title = {An iterative thresholding algorithm for linear inverse problems with a sparsity constraint}, Author = {Daubechies, I. and Defrise, M. and De Mol, C.}, Journal = {Comms. on Pure and App. Math.}, Year = {2004}, Number = {11}, Pages = {1413--1457}, Volume = {57}, Owner = {jmscarlett}, Publisher = {Wiley Online Library}, Timestamp = {2014.11.25} } @Article{Daubechies2010, Title = {Iteratively reweighted least squares minimization for sparse recovery}, Author = {Daubechies, Ingrid and DeVore, Ronald and Fornasier, Massimo and Güntürk, C. Si̇nan}, Journal = {Comms. on Pure and App. Math.}, Year = {2010}, Number = {1}, Pages = {1--38}, Volume = {63}, Doi = {10.1002/cpa.20303}, File = {daubechies2010iteratively.pdf:Statistical Learning\\SPARSITY\\daubechies2010iteratively.pdf:PDF}, ISSN = {1097-0312}, Owner = {jmscarlett}, Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1002/cpa.20303} } @Article{Daubechies2008, Title = {Accelerated projected gradient method for linear inverse problems with sparsity constraints}, Author = {Daubechies, I. and Fornasier, M. and Loris, I.}, Journal = {J. Fourier Anal. and Apps.}, Year = {2008}, Number = {5}, Pages = {764--792}, Volume = {14}, File = {daubechies2008.pdf:Optimization\\daubechies2008.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Davenport2014, Title = {1-Bit matrix completion}, Author = {Davenport, Mark A. and Plan, Yaniv and van den Berg, Ewout and Wootters, Mary}, Journal = {Information and Inference}, Year = {2014}, Pages = {189--223}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.09.11} } @Article{Davidon1968, Title = {{V}ariance algorithms for minimization}, Author = {Davidon, W. C.}, Journal = {Computer Journal}, Year = {1968}, Pages = {406--410}, Volume = {10}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Davidson2002, Title = {A genomic regulatory network for development.}, Author = {Eric H Davidson and Jonathan P Rast and Paola Oliveri and Andrew Ransick and Cristina Calestani and Chiou-Hwa Yuh and Takuya Minokawa and Gabriele Amore and Veronica Hinman and Cesar Arenas-Mena and Ochan Otim and C. Titus Brown and Carolina B Livi and Pei Yun Lee and Roger Revilla and Alistair G Rust and Zheng jun Pan and Maria J Schilstra and Peter J C Clarke and Maria I Arnone and Lee Rowen and R. Andrew Cameron and David R McClay and Leroy Hood and Hamid Bolouri}, Journal = {Science}, Year = {2002}, Month = {Mar}, Number = {5560}, Pages = {1669--1678}, Volume = {295}, Abstract = {Development of the body plan is controlled by large networks of regulatory genes. A gene regulatory network that controls the specification of endoderm and mesoderm in the sea urchin embryo is summarized here. The network was derived from large-scale perturbation analyses, in combination with computational methodologies, genomic data, cis-regulatory analysis, and molecular embryology. The network contains over 40 genes at present, and each node can be directly verified at the DNA sequence level by cis-regulatory analysis. Its architecture reveals specific and general aspects of development, such as how given cells generate their ordained fates in the embryo and why the process moves inexorably forward in developmental time.}, Doi = {10.1126/science.1069883}, File = {BIO\\Davidson02Regulatory.pdf:BIO\\Davidson02Regulatory.pdf:PDF}, Keywords = {Animals; Cell Lineage; Computational Biology; Embryonic Development; Endoderm; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genes, Regulator; Genome; Mesoderm; Models, Biological; Models, Genetic; Morphogenesis; Regulatory Sequences, Nucleic Acid; Sea Urchins; Stem Cells; Systems Theory}, Owner = {BaldaZen}, Pii = {295/5560/1669}, Pmid = {11872831}, Timestamp = {2007.02.01}, Url = {http://dx.doi.org/10.1126/science.1069883} } @InCollection{Davidson2001, Title = {Local operator theory, random matrices and {B}anach spaces}, Author = {Davidson, Kenneth R. and Szarek, Stanislaw J.}, Booktitle = {Handbook of the Geometry of {B}anach Spaces}, Publisher = {Elsevier}, Year = {2001}, Address = {Amsterdam}, Chapter = {8}, Editor = {Johnson, W. B. and Lindenstrauss, J.}, Pages = {317--366}, Volume = {1}, Owner = {yhli}, Timestamp = {2014.07.24} } @TechReport{DeMol2007, Title = {Sparse Tikhonov Regularization for Variable Selection and Learning}, Author = {De Mol, C. and De Vito, E. and Rosasco, L.}, Institution = {DISI}, Year = {2007}, Owner = {baldazen}, Timestamp = {2008.01.25} } @InProceedings{DeNicolao2000, Title = {{S}tability and {R}obustness of {N}onlinear {R}eceding {H}orizon {C}ontrol}, Author = {De Nicolao, {G.} and Magni, L. and Scattolini, R.}, Booktitle = {Nonlinear Predictive Control}, Year = {2000}, Address = {Basel Boston Berlin}, Editor = {F. Allg\"ower and A. Zheng}, Pages = {3--23}, Publisher = {Birkh\"auser}, Series = {Progress in Systems Theory}, Volume = {26}, Key = {ISBN 3-7643-6297-9}, Keywords = {NMPC optimal control robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{DeNicolao1996, Title = {{S}tabilizing nonlinear receding horizon control via a nonquadratic terminal state penalty}, Author = {G. {De Nicolao} and L. Magni and R. Scattolini}, Booktitle = {Symp. Control, Opt. and Supervision}, Year = {1996}, Address = {Lille}, Pages = {185--187}, Keywords = {NMPC optimal control robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{deOliveira1995, Title = {{A}n {E}xtension of {Newton}-type {A}lgorithms for {N}onlinear {P}rocess {C}ontrol}, Author = {N.M.C. {de Oliveira} and L.T. Biegler}, Journal = {Automatica}, Year = {1995}, Number = {2}, Pages = {281--286}, Volume = {31}, File = {deOliveira1995.pdf:deOliveira1995.pdf:PDF}, Keywords = {NMPC optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{DeVito2005a, Title = {Risk Bounds for Regularized Least-squares Algorithm with Operator-valued Kernels}, Author = {De Vito, Ernesto and Caponnetto, Andrea}, Institution = {Massachusetts Institute of Technology — Computer Science and Artificial Intelligence Laboratory}, Year = {2005}, File = {DeVitoCaponnetto05OperatorValued.pdf:Statistical Learning/Vector-valued/DeVitoCaponnetto05OperatorValued.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @Article{DeVito2005c, Title = {Model Selection for Regularized Least-Squares Algorithm in Learning Theory}, Author = {De Vito, E. and Caponnetto, A. and Rosasco, L.}, Journal = {Found. Comp. Math.}, Year = {2005}, Pages = {59--85}, Volume = {5}, File = {:Statistical Learning/rosasco05modelselectionrls.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2009.08.20} } @TechReport{DeVito2008, Title = {Adaptive Kernel Methods via the Balancing Principle}, Author = {De Vito, E. and Pereverzev, S. and Rosasco, L.}, Institution = {MIT}, Year = {2008}, Number = {CBCL paper 275/CSAILTR-2008-062}, File = {devito2008adaptive.pdf:Statistical Learning/devito2008adaptive.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2009.11.10} } @Article{DeVito2005b, Title = {Discretization Error Analysis for Tikhonov Regularization}, Author = {De Vito, E. and Rosasco, L. and Caponnetto, A.}, Journal = {Anal. and Apps.}, Year = {2005}, File = {devito2005discretization.pdf:Statistical Learning/devito2005discretization.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.01.26} } @Article{DeVito2005, Title = {Learning from Examples as an Inverse Problem}, Author = {De Vito, Ernesto and Rosasco, Lorenzo and Caponnetto, Andrea and De Giovannini, Umberto and Odone, Francesca}, Journal = {J. Mach. Learn. Res.}, Year = {2005}, Pages = {883--904}, Volume = {6}, Address = {Cambridge, MA, USA}, File = {:Statistical Learning/devito05learning.pdf:PDF}, ISSN = {1533-7928}, Owner = {baldazen}, Publisher = {MIT Press}, Timestamp = {2008.09.04} } @Article{DeVito2004, Title = {Some Properties of Regularized Kernel Methods}, Author = {De Vito, E. and Rosasco, L. and Caponnetto, A. and Piana, M. and Verri, A.}, Journal = {J. Mach. Learn. Res.}, Year = {2004}, Pages = {1363-1390}, Volume = {5}, File = {:Statistical Learning/devito04someprop.pdf:PDF}, Keywords = {kernel methods, representer theorem}, Owner = {baldazen}, Timestamp = {2008.02.08} } @Conference{Debrouwere2012, Title = {Time-optimal robot path following with Cartesian acceleration constraints: a convex optimization approach.Debrouwere2012}, Author = {F. Debrouwere and W. Van Loock and G. Pipeleers and Q. Tran-Dinh and M. Diehl and J. De Schutter and J. Swevers}, Booktitle = {Mechatronics Forum International Conference}, Year = {2012}, Address = {Linz, Austria}, Number = {3}, Pages = {469--475}, Series = {Mechatronics Forum International Conference}, Volume = {2}, Owner = {quoctd}, Timestamp = {2012.10.12} } @Article{Debrouwere2013, Title = {{T}ime-{O}ptimal {P}ath {F}ollowing for {R}obots with {C}onvex-{C}oncave {C}onstraints using {S}equential {C}onvex {P}rogramming}, Author = {F. Debrouwere and W. Van-Loock and G. Pipeleers and Q. Tran-Dinh and M. Diehl and J. De-Schutter and J. Swevers}, Journal = {IEEE Trans. Robotics}, Year = {2013}, Number = {6}, Pages = {1485--1495}, Volume = {29}, Owner = {quoctd}, Timestamp = {2014.09.28} } @Article{Decatur1999, Title = {Computational sample complexity}, Author = {Decatur, Scott E. and Goldreich, Oded and Ron, Dana}, Journal = {SIAM J. Comput.}, Year = {1999}, Number = {3}, Pages = {854--879}, Volume = {29}, Owner = {yhli}, Timestamp = {2014.07.24} } @InProceedings{Defraene2011, Title = {A fast projected gradient optimization method for real-time perception-based clipping of audio signals}, Author = {Defraene, B. and van Waterschoot, T. and Diehl, M. and Moonen, M.}, Booktitle = {IEEE Int. Conf. Acoustics, Speech, and Sig. Proc. (ICASSP)}, Year = {2011}, Month = {may}, Pages = {333 -336}, Doi = {10.1109/ICASSP.2011.5946408}, File = {Defraene2011.PDF:Defraene2011.PDF:PDF}, ISSN = {1520-6149}, Keywords = {audio signal processing;computational complexity;gradient projection optimization method;real-time perception-based clipping algorithm;audio signal processing;computational complexity;gradient methods;optimisation;}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5946408&tag=1} } @InProceedings{Dekel2002, Title = {Multiclass Learning by Probabilistic Embeddings}, Author = {Dekel, O. and Singer, Y.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2002}, File = {dekel02multiclass.pdf:Statistical Learning/Multiclass/dekel02multiclass.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.03.17}, Url = {citeseer.ist.psu.edu/dekel02multiclass.html} } @Book{Dekker1984, Title = {{S}tability of {R}unge-{K}utta methods for stiff non-linear differential equations}, Author = {Dekker, K. and Verwer, J. G.}, Publisher = {North Holland Publ. Co.}, Year = {1984}, Address = {Amsterdam}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Deledalle2014, Title = {Stein unbiased {G}r{A}dient estimator of the {R}isk ({SUGAR}) for multiple parameter selection}, Author = {Deledalle, Charles-Alban and Vaiter, Samuel and Peyr\'{e}, Gabriel and Fadili, Jalal}, Year = {2014}, Month = may, Note = {arXiv: 1405.1164v1 [math.ST]}, Owner = {yhli}, Timestamp = {2014.07.08} } @TechReport{Dellaert2002, Title = {The Expectation Maximization Algorithm}, Author = {Frank Dellaert}, Institution = {College of Computing, Georgia Institute of Technology}, Year = {2002}, File = {em-paper.pdf:Statistics/em-paper.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.25} } @Article{Dempe2007, Title = {New necessary optimality conditions in optimistic bilevel programming}, Author = {S. Dempe and J. Dutta and B. S. Mordukhovich}, Journal = {Optimization}, Year = {2007}, Number = {5--6}, Pages = {577--604}, Volume = {56}, File = {:Papers/Dempe2007.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Article{Dempe2012, Title = {Sensitivity Analysis for Two-Level Value Functions with Applications to Bilevel Programming}, Author = {S. Dempe and B. S. Mordukhovich and A. B. Zemkoho}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {4}, Pages = {1309--1343}, Volume = {24}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Dempster1972, Title = {Covariance Selection}, Author = {A. P. Dempster}, Journal = {Biometrics}, Year = {1972}, Pages = {157-175}, Volume = {28}, Owner = {quoctd}, Timestamp = {2013.01.10} } @Article{Dennis1977, Title = {{Q}uasi-{N}ewton {M}ethods, {M}otivation and {T}heory}, Author = {Dennis, J.E. and J. J. Mor{\'{e}}}, Journal = {{SIAM} Review}, Year = {1977}, Month = {January}, Number = {1}, Pages = {46--89}, Volume = {19}, Keywords = {SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Dennis1974, Title = {A characterization of superlinear convergence and its application to quasi-Newton methods}, Author = {Dennis, JE and Mor{\'e}, Jorge J}, Journal = {Math. Comp.}, Year = {1974}, Number = {126}, Pages = {549--560}, Volume = {28}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Dennis1989, Title = {{A} view of unconstrained optimization}, Author = {Dennis, J.E. and Schnabel, R.B.}, Booktitle = {Handbooks in Oper. Res. and Management Science}, Year = {1989}, Address = {Amsterdam}, Editor = {Nemhauser, G. L. and Rinnooy, A. H. G. and Todd, M. J.}, Publisher = {Elsevier}, Volume = {1(Optimization)}, Keywords = {SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Dennis1983, Title = {{N}umerical {M}ethods for {U}nconstrained {O}ptimization and {N}onlinear {E}quations}, Author = {Dennis, J.E. and Schnabel, R.B.}, Publisher = {Prentice Hall}, Year = {1983}, Address = {Englewood Cliffs, NJ}, Series = {Computational Mathematics}, Keywords = {SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Deshpande1985, Title = {{D}istillation {D}ynamics and {C}ontrol}, Author = {P.B. Deshpande}, Publisher = {Instrument Society of America}, Year = {1985}, Address = {New York}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Destrero2008, Title = {Feature Selection for High-Dimensional Data}, Author = {Destrero, A. and Mosci, S. and De Mol, C. and Verri, A. and Odone, F.}, Journal = {Computational Management Science}, Year = {2008}, File = {destrero08feature.pdf:Statistical Learning\\SPARSITY\\destrero08feature.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.08.05} } @Article{Detlefs1994, Title = {Memory allocation costs in large {C} and {C++} programs}, Author = {D. Detlefs and A. Dosser and B. Zorn}, Journal = {Software: Practice and Experience}, Year = {1994}, Number = {6}, Pages = {527--542}, Volume = {24}, File = {:Detlefs1994.pdf:PDF}, Keywords = {Garbage collection, Dynamic storage allocation, Performance evaluation, Conservative collection, Dynamic memory management}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Deuflhard1987, Title = {{O}ne step and extrapolation methods for differential-algebraic systems}, Author = {Deuflhard, P. and Hairer, E. and Zugck, J.}, Journal = {Numerische {M}athematik}, Year = {1987}, Pages = {501--516}, Volume = {51}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Deuflhard1979, Title = {{A}ffine {I}nvariant {C}onvergence {T}heorems for {N}ewton's {M}ethod and {E}xtensions to {R}elated {M}ethods}, Author = {P. Deuflhard and G. Heindl}, Journal = {{SIAM} J. Numer. Anal.}, Year = {1979}, Pages = {1--10}, Keywords = {SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Devolder2010, Title = {First-order methods of smooth convex optimization with inexact oracle.}, Author = {O. Devolder and F.Glineur and Y. Nesterov}, Journal = {Submitted to Math. Program.}, Year = {2010}, Number = {1--2}, Pages = {37--75}, Volume = {146}, File = {:Papers/Devolder2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Devolder2013, Title = {First-order mmethod of smooth convex optimization with inexact oracle}, Author = {Devolder, Olivier and Glineur, Francois and Nesterov, Yurii}, Journal = {Math. Program., Ser. A}, Year = {2013}, Month = jun, Owner = {yhli}, Timestamp = {2014.03.13} } @Article{Devolder2012, Title = {Double Smoothing Technique for Large-Scale Linearly Constrained Convex Optimization}, Author = {O. Devolder and F. Glineur and Y. Nesterov}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {2}, Pages = {702--727}, Volume = {22}, File = {:Papers/Devolder2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{DeVore2007, Title = {Deterministic constructions of compressed sensing matrices}, Author = {DeVore, Ronald A}, Journal = {J. Complexity}, Year = {2007}, Number = {4}, Pages = {918--925}, Volume = {23}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{DeVore1996, Title = {Some remarks on greedy algorithms}, Author = {DeVore, Ronald A and Temlyakov, Vladimir N}, Journal = {Advances in computational Mathematics}, Year = {1996}, Number = {1}, Pages = {173--187}, Volume = {5}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Book{Devroye1996, Title = {A Probabilistic Theory of Pattern Recognition}, Author = {Devroye, Luc and Gy\"{o}rfi, L\'{a}szl\'{o} and Lugosi, G\'{a}bor}, Publisher = {Springer-Verl.}, Year = {1996}, Address = {New York}, Owner = {yhli}, Timestamp = {2014.07.25} } @Misc{Diehl2003, Title = {{T}he {K}ite {B}enchmark {P}roblem {H}omepage}, Author = {Diehl, M.}, HowPublished = {http://www.iwr.uni-heidelberg.de/\ { }Moritz.Diehl/KITE/kite.htm}, Month = {September}, Year = {2003}, Keywords = {agbock}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Diehl2002, Title = {{R}eal-{T}ime {O}ptimization for {L}arge {S}cale {N}onlinear {P}rocesses}, Author = {M. Diehl}, Publisher = {VDI Verlag}, Year = {2002}, Address = {D\"usseldorf}, Note = {Download also at: http://www.ub.uni-heidelberg.de/archiv/1659/}, Series = {Fortschr.-Ber. VDI Reihe 8, Me\ss-, Steuerungs- und Regelungstechnik}, Volume = {920}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Pages = {179}, Timestamp = {2013.08.23} } @PhdThesis{Diehl2001, Title = {{R}eal-{T}ime {O}ptimization for {L}arge {S}cale {N}onlinear {P}rocesses}, Author = {M. Diehl}, School = {Universit\"at Heidelberg}, Year = {2001}, Note = {http://www.ub.uni-heidelberg.de/archiv/1659/}, File = {Diehl2001.pdf:Diehl2001.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://archiv.ub.uni-heidelberg.de/volltextserver/frontdoor.php?source_opus=1659} } @MastersThesis{Diehl1998, Title = {{A} direct multiple shooting method for the optimization and control of chemical processes}, Author = {Diehl, M.}, School = {Universit\"at Heidelberg}, Year = {1998}, File = {Diehl1998.pdf:Diehl1998.pdf:PDF}, Keywords = {agbockagbock chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Diehl2004, Title = {{R}obust {D}ynamic {P}rogramming for {M}in-{M}ax {M}odel {P}redictive {C}ontrol of {C}onstrained {U}ncertain {S}ystems}, Author = {M. Diehl and J. Bj\"ornberg}, Journal = {IEEE Trans. Aut. Control}, Year = {2004}, Month = {December}, Number = {12}, Pages = {2253--2257}, Volume = {49}, Doi = {10.1109/TAC.2004.838489}, File = {Diehl2004a.pdf:Diehl2004a.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control robust}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1369401} } @TechReport{Diehl2003a, Title = {{R}obust {D}ynamic {P}rogramming for {L}inearly {C}onstrained {P}olytopic {S}ystems with {P}iecewise {L}inear {C}ost}, Author = {Diehl, M. and Bj\"ornberg, J.}, Institution = {SFB 359, Universit\"at Heidelberg}, Year = {2003}, Citeseerurl = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.11.2451}, File = {Diehl2003a.pdf:Diehl2003a.pdf:PDF}, Key = {Preprint 2003-14}, Keywords = {agbock NMPC chemistry multiple shooting optimal control robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Diehl2006b, Title = {{A}n approximation technique for robust nonlinear optimization}, Author = {M. Diehl and H.G. Bock and E. Kostina}, Journal = {Math. Prog.}, Year = {2006}, Pages = {213--230}, Volume = {107}, Doi = {10.1007/s10107-005-0685-1}, File = {Diehl2006c.pdf:Diehl2006c.pdf:PDF}, Keywords = {agbock robust optimization optec}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.springerlink.com/content/y737861045873673/} } @InProceedings{Diehl2002a, Title = {{N}ewton-{T}ype {M}ethods for the {A}pproximate {S}olution of {N}onlinear {P}rogramming {P}roblems in {R}eal-{T}ime}, Author = {M. Diehl and H.G. Bock and J.P. Schl\"oder}, Booktitle = {High Performance Algorithms and Software for Nonlinear Optimization}, Year = {2002}, Editor = {G. Di Pillo and A. Murli}, Pages = {177--200}, Publisher = {Kluwer Academic Publishers B.V.}, Keywords = {agbock SQP NMPC optimization multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Diehl2005, Title = {{A} real-time iteration scheme for nonlinear optimization in optimal feedback control}, Author = {M. Diehl and H.G. Bock and J.P. Schl\"oder}, Journal = {{SIAM} J. Control and Optimization}, Year = {2005}, Number = {5}, Pages = {1714--1736}, Volume = {43}, Doi = {10.1137/S0363012902400713}, File = {Diehl2005.pdf:Diehl2005.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://epubs.siam.org/sicon/resource/1/sjcodc/v43/i5/p1714\_s1} } @Article{Diehl2002b, Title = {{R}eal-time optimization and {N}onlinear {M}odel {P}redictive {C}ontrol of {P}rocesses governed by differential-algebraic equations}, Author = {M. Diehl and H.G. Bock and J.P. Schl\"oder and R. Findeisen and Z. Nagy and F. Allg\"ower}, Journal = {J. Proc. Control}, Year = {2002}, Number = {4}, Pages = {577--585}, Volume = {12}, File = {Diehl2002b.pdf:Diehl2002b.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Diehl2007a, Title = {{A} {S}tabilizing {R}eal-time {I}mplementation of {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {M. Diehl and R. Findeisen and F. Allg\"ower}, Booktitle = {Real-Time and Online PDE-Constrained Optimization}, Publisher = {{SIAM}}, Year = {2007}, Editor = {L. Biegler and O. Ghattas and M. Heinkenschloss and D. Keyes and B. van Bloemen Waanders}, Pages = {23--52}, File = {Diehl2007b.pdf:Diehl2007b.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Diehl2005a, Title = {{N}ominal {S}tability of the {R}eal-{T}ime {I}teration {S}cheme for {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {Diehl, M. and Findeisen, R. and Allg\"ower, F. and Bock, H.G. and Schl\"oder, J.P.}, Journal = {IEE Proc.-Control Theory Appl.}, Year = {2005}, Number = {3}, Pages = {296--308}, Volume = {152}, Annote = {Appeared also as IMA Preprint \#1910, University of Minnesota}, Doi = {10.1049/ip-cta:20040008}, File = {Diehl2005b.pdf:Diehl2005b.pdf:PDF}, Institution = {IEE}, Keywords = {agbock NMPC optec chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Diehl2003b, Title = {{N}ominal {S}tability of the {R}eal-{T}ime {I}teration {S}cheme for {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {Diehl, M. and Findeisen, R. and Allg\"ower, F. and Bock, H.G. and Schl\"oder, J.P.}, Institution = {IMA, University of Minnesota}, Year = {2003}, Number = { \#1910}, File = {Diehl2003b.ps:Diehl2003b.ps:PostScript}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Diehl2003c, Title = {{S}tability of nonlinear model predictive control in the presence of errors due to numerical online optimization}, Author = {M. Diehl and R. Findeisen and F. Allg\"ower and J.P. Schl\"oder and H.G. Bock}, Booktitle = {Proc. {IEEE} Conf. Decision and Control}, Year = {2003}, Address = {Maui, Hawaii}, Pages = {1419--1424}, Doi = {10.1109/CDC.2003.1272809}, File = {Diehl2003d.pdf:Diehl2003d.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1272809} } @Article{Diehl2003d, Title = {{A}n {E}fficient {A}lgorithm for {N}onlinear {M}odel {P}redictive {C}ontrol of {L}arge-{S}cale {S}ystems. {P}art {II}: {A}pplication to a {D}istillation {C}olumn}, Author = {M. Diehl and R. Findeisen and S. Schwarzkopf and I. Uslu and F. Allg\"ower and H.G. Bock and E.D. Gilles and J.P. Schl\"oder}, Journal = {Automatisierungstechnik}, Year = {2003}, Number = {1}, Pages = {22--29}, Volume = {51}, File = {Diehl2003d.pdf:Diehl2003d.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.mendeley.com/research/efficient-algorithm-nonlinear-model-predictive-control-largescale-systems-part-ii-experimental-evaluation-distillation-column-ein-efficient-algorithm-nonlinear-model-predictive-control-largescale-systems-part-ii-experimental/} } @Article{Diehl2006, Title = {{L}oss of superlinear convergence for an {SQP}-type method with conic constraints}, Author = {M. Diehl and F. Jarre and C. Vogelbusch}, Journal = {SIAM J. Opt.}, Year = {2006}, Number = {4}, Pages = {1201--1210}, Volume = {16}, Doi = {10.1137/050625977}, File = {Diehl2006.pdf:Diehl2006.pdf:PDF}, Keywords = {LMI SQP optec}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://link.aip.org/link/?SJE/16/1201/1} } @InProceedings{Diehl2002c, Title = {{S}imultaneous {E}stimation of {E}xtended {O}ptical {F}low and {G}lobal {P}arameters}, Author = {M. Diehl and R. K\"usters and H. Scharr}, Booktitle = {Workshop on Dynamic Perception}, Year = {2002}, Address = {Bochum}, File = {Diehl2002d.pdf:Diehl2002d.pdf:PDF}, Keywords = {agbock multiple shooting parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Diehl2001b, Title = {{MUSCOD-II} {U}sers' {M}anual}, Author = {M. Diehl and D.B. Leineweber and A.A.S. Sch\"afer}, Institution = {Universit\"at Heidelberg}, Year = {2001}, Number = {2001-25}, Type = {IWR-Pre\-print}, File = {Diehl2001b.pdf:Diehl2001b.pdf:PDF}, Keywords = {agbock multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Diehl2003e, Title = {{O}nline {NMPC} of a looping kite using approximate infinite horizon closed loop costing}, Author = {Diehl, M. and L. Magni and {G. De} Nicolao}, Booktitle = {IFAC Conf. Control Sys. Design}, Year = {2003}, Address = {Bratislava, Slovak Republic}, Month = {September 7-10}, Organization = {IFAC}, Keywords = {agbock NMPC multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Diehl2004a, Title = {Efficient NMPC of unstable periodic systems using approximate infinite horizon closed loop costing}, Author = {Moritz Diehl and Lalo Magni and Giuseppe De Nicolao}, Journal = {Annual Rev. Control}, Year = {2004}, Number = {1}, Pages = {37 - 45}, Volume = {28}, Doi = {10.1016/j.arcontrol.2004.01.011}, File = {Diehl2004f.pdf:Diehl2004f.pdf:PDF}, ISSN = {1367-5788}, Keywords = {Periodic control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S1367578804000057} } @Article{Diehl2009, Title = {Stability Optimization of Hybrid Periodic Systems via a Smooth Criterion}, Author = {Diehl, M. and Mombaur, K. and Noll, D.}, Journal = {Automatic Control, IEEE Transactions on}, Year = {2009}, Month = {aug. }, Number = {8}, Pages = {1875 -1880}, Volume = {54}, Doi = {10.1109/TAC.2009.2020669}, File = {Diehl2009a.pdf:Diehl2009a.pdf:PDF}, ISSN = {0018-9286}, Keywords = {boundary value problem;complex open-loop stability optimization;controlled hybrid dynamic systems;differentiable criterion;differentiable nonlinear optimal control problem;ground impacts;hybrid periodic systems;matrix constraint;monodromy matrix;nonlinear dynamics;nonsmooth criteria;numerical optimization;open-loop control;periodic orbits;periodicity constraint;pseudo spectral radius;relaxed Lyapunov equation;smooth criterion;smooth stability optimization program;smoothed spectral radius;walking robot model;yield maximally stable limit cycles;Lyapunov methods;boundary-value problems;matrix algebra;open loop systems;optimal control;optimisation;periodic control;stability;time-varying systems;}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5173484} } @Article{Diehl2002d, Title = {{O}ptimization of {M}ultiple-{F}raction {B}atch {D}istillation with {R}ecycled {W}aste {C}uts}, Author = {M. Diehl and A.A.S. Sch\"afer and H.G. Bock and J.P. Schl\"oder and D.B. Leineweber}, Journal = {{AIChE} Journal}, Year = {2002}, Number = {12}, Pages = {2869--2874}, Volume = {48}, Doi = {10.1002/aic.690481214}, File = {Diehl2002.pdf:Diehl2002.pdf:PDF}, Keywords = {agbock chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://onlinelibrary.wiley.com/doi/10.1002/aic.690481214/abstract} } @InCollection{Diehl2001a, Title = {{R}eal-{T}ime {O}ptimization for {L}arge {S}cale {P}rocesses: {N}onlinear {M}odel {P}redictive {C}ontrol of a {H}igh {P}urity {D}istillation {C}olumn}, Author = {Diehl, M. and Uslu, I. and Findeisen, R. and Schwarzkopf, S. and Allg\"ower, F. and Bock, H.G. and B\"urner, T. and Gilles, E.D. and Kienle, A. and Schl\"oder, J.P. and Stein, E.}, Booktitle = {Online {O}ptimization of {L}arge {S}cale Systems: {S}tate of the {A}rt}, Publisher = {Springer}, Year = {2001}, Editor = {M. Gr\"otschel and S. O. Krumke and J. Rambau}, Note = {download at: http://www.zib.de/dfg-echtzeit/Publikationen/Preprints/Preprint-01-16.html}, Pages = {363--384}, Citeseerurl = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.17.8798}, File = {Diehl2001a.pdf:Diehl2001a.pdf:PDF}, Keywords = {agbock NMPC chemistry multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.17.8798} } @Article{Diehl2010, Title = {An adjoint-based {SQP} algorithm with quasi-{N}ewton {J}acobian updates for inequality constrained optimization}, Author = {M. Diehl and A. Walther and H.G. Bock and E. Kostina}, Journal = {Opt. Methods and Softw.}, Year = {2010}, Number = {4}, Pages = {531--552 }, Volume = {25}, Owner = {quoctd}, Timestamp = {2012.04.08} } @TechReport{Dieses2001, Title = {{N}umerical {M}ethods for {O}ptimization {P}roblems in {W}ater {F}low and {R}eactive {S}olute {T}ransport {P}rocesses of {X}enobiotics in {S}oils}, Author = {Dieses, A.}, Institution = {Universit\"at Heidelberg}, Year = {2001}, Note = {Ph.D. Thesis}, Number = {SFB Preprint 2001-07}, Keywords = {agbock multiple shooting parameter estimation PDE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Dieses1999, Title = {{P}arameter {E}stimation for nonlinear transport and degradation processes of xenobiotica in soil}, Author = {A. E. Dieses and J.P. Schl\"oder and H.G. Bock and O. Richter}, Booktitle = {Scientific Computing in Chemical Engineering II}, Year = {1999}, Editor = {F. Keil et al.}, Pages = {290--297}, Publisher = {Springer Verlag}, Volume = {2}, Keywords = {agbock multiple shooting parameter estimation PDE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Dietterich1995, Title = {Solving Multiclass Learning Problems via Error-Correcting Output Codes}, Author = {Thomas G. Dietterich and Ghulum Bakiri}, Journal = {J. Art. Int. Res.}, Year = {1995}, Pages = {263-286}, Volume = {2}, File = {dietterich95solving.pdf:Statistical Learning/Multiclass/dietterich95solving.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {citeseer.ist.psu.edu/dietterich95solving.html} } @Article{Dimakis2012, Title = {{LDPC} Codes for Compressed Sensing}, Author = {Dimakis, AG. and Smarandache, R. and Vontobel, P.O.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2012}, Month = {May}, Number = {5}, Pages = {3093-3114}, Volume = {58}, ISSN = {0018-9448}, Owner = {jmscarlett} } @Conference{Ding2004a, Title = {K-means clustering via principal component analysis}, Author = {Ding, C. and He, X.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2004}, Organization = {ACM New York, NY, USA}, File = {ding2004kmeanspca.pdf:Statistical Learning/CLUSTERING/ding2004kmeanspca.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.03.17} } @Article{Ding2012, Title = {An Introduction to a Class of Matrix Cone Programming}, Author = {C. Ding and D. Sun and K.C. Toh}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Ding2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Book{Diwekar1995, Title = {{B}atch distillation: simulation, optimal design, and control}, Author = {U.M. Diwekar}, Publisher = {Taylor \& Francis}, Year = {1995}, Address = {Washington}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Diwekar1987, Title = {{O}ptimal {R}eflux {R}ate {P}olicy {D}etermination for {M}ulticomponent {B}atch {D}istillation {C}olumns}, Author = {U.M. Diwekar and R.K. Malik and K.P. Madhavan}, Journal = {Comp. Chem. Eng.}, Year = {1987}, Pages = {629}, Volume = {11}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Djordjevic2003, Title = {A biophysical approach to transcription factor binding site discovery.}, Author = {Marko Djordjevic and Anirvan M Sengupta and Boris I Shraiman}, Journal = {Genome Res.}, Year = {2003}, Month = {Nov}, Number = {11}, Pages = {2381--2390}, Volume = {13}, Abstract = {Identification of transcription factor binding sites within regulatory segments of genomic DNA is an important step toward understanding of the regulatory circuits that control expression of genes. Here, we describe a novel bioinformatics method that bases classification of potential binding sites explicitly on the estimate of sequence-specific binding energy of a given transcription factor. The method also estimates the chemical potential of the factor that defines the threshold of binding. In contrast with the widely used information-theoretic weight matrix method, the new approach correctly describes saturation in the transcription factor/DNA binding probability. This results in a significant improvement in the number of expected false positives, particularly in the ubiquitous case of low-specificity factors. In the strong binding limit, the algorithm is related to the "support vector machine" approach to pattern recognition. The new method is used to identify likely genomic binding sites for the E. coli transcription factors collected in the DPInteract database. In addition, for CRP (a global regulatory factor), the likely regulatory modality (i.e., repressor or activator) of predicted binding sites is determined.}, Doi = {10.1101/gr.1271603}, File = {djordjevic03biophysical.pdf:BIO/djordjevic03biophysical.pdf:PDF}, Keywords = {Algorithms; Binding Sites; Biophysics; Computational Biology; DNA, Bacterial; Databases, Genetic; Escherichia coli; Gene Expression Regulation; Internet; Models, Statistical; Transcription Factors}, Owner = {luca}, Pii = {13/11/2381}, Pmid = {14597652}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1101/gr.1271603} } @InProceedings{DoBa2010, Title = {Lower Bounds for Sparse Recovery.}, Author = {Do Ba, Khanh and Indyk, Piotr and Price, Eric and Woodruff, David P}, Booktitle = {SODA}, Year = {2010}, Organization = {SIAM}, Pages = {1190--1197}, Volume = {10}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Doan2009, Title = {A distributed version of {Han}'s method for {DMPC} using local communications only}, Author = {D. Doan and T. Keviczky and I. Necoara and M. Diehl and B. {D}e Schutter}, Journal = {Control Eng. and App. Informatics}, Year = {2009}, Number = {3}, Pages = {6--15}, Volume = {11}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Dohono2006, Title = {For most large underdetermined systems of linear equations the minimal $\ell_1$-norm solution is also the sparsest solution}, Author = {Dohono, David L.}, Journal = {Commun. Pure Appl. Math.}, Year = {2006}, Pages = {797--829}, Volume = {LIX}, Owner = {yhli}, Timestamp = {2014.07.24} } @Article{Dolan2002, Title = {Benchmarking optimization software with performance profiles}, Author = {E.D. Dolan and J.J. Mor\'e}, Journal = {Math. Program.}, Year = {2002}, Pages = {201--213}, Volume = {91}, Owner = {quoctd}, Timestamp = {2012.05.09} } @InProceedings{Domahidi2012, Title = {Efficient interior point Methods for Multistage Problems Arising in Receding Horizon Control}, Author = {A. Domahidi and A. Zgraggen and M.N. Zeilinger and M. Morari and C.N. Jones}, Booktitle = {IEEE Conf. Decision and Control}, Year = {2012}, Address = {Maui, HI, USA}, Month = dec, Pages = {668 -- 674}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Domenech1981, Title = {{P}rogram for {S}imulation {B}atch {R}ectification as {U}nit {O}peration}, Author = {Domenech, S. and M. Enjalbert}, Journal = {Comp. Chem. Eng.}, Year = {1981}, Number = {181}, Volume = {5}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Dongarra1990, Title = {{A} {S}et of {L}evel 3 {B}asic {L}inear {A}lgebra {S}ubprograms}, Author = {J.J. Dongarra and J. Du Croz and I. Duff and S. Hammarling}, Journal = {{ACM} Trans. on Math. Soft.}, Year = {1990}, Pages = { 1--28}, Volume = {16,1}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Dongarra1988, Title = {{A}n extended {S}et of {F}ortran {B}asic {L}inear {A}lgebra {S}ubprograms}, Author = {J.J. Dongarra and J. Du Croz and S. Hammarling and R. Hanson}, Journal = {{ACM} Trans. on Math. Soft.}, Year = {1988}, Pages = {1--32}, Volume = {14,1}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Donoho2003, Title = {Maximal sparsity representation via l1 minimization}, Author = {D. Donoho and M. Elad}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2003}, Pages = {2197-2202}, Volume = {100}, Citeseerurl = {citeseer.ist.psu.edu/donoho03maximal.html}, File = {Statistical Learning\\donoho03maximal.pdf:Statistical Learning\\donoho03maximal.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2007.02.01} } @Article{Donoho2011, Title = {The Noise-Sensitivity Phase Transition in Compressed Sensing}, Author = {Donoho, D.L. and Maleki, A and Montanari, A}, Journal = {IEEE Trans. Inf. Theory}, Year = {2011}, Month = {Oct.}, Number = {10}, Pages = {6920-6941}, Volume = {57}, ISSN = {0018-9448}, Owner = {jmscarlett} } @Article{Donoho2009a, Title = {Observed universality of phase transitions in high-dimensional geometry, with implications for modern data analysis and signal processing}, Author = {Donoho, David and Tanner, Jared}, Journal = {Phil. Trans. Royal Soc. A}, Year = {2009}, Pages = {4273--4293}, Volume = {367}, Owner = {yhli}, Timestamp = {2014.07.30} } @Article{Donoho2006, Title = {Compressed sensing}, Author = {Donoho, David L.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2006}, Month = apr, Number = {4}, Pages = {1289--1306}, Volume = {52}, Owner = {yhli}, Timestamp = {2014.07.30} } @Article{Donoho2006a, Title = {High-dimensional centrally symmetric polytopes with neighborliness proportional to dimension}, Author = {Donoho, David L.}, Journal = {Discrete Comp. Geom.}, Year = {2006}, Pages = {617--652}, Volume = {35}, Owner = {yhli}, Timestamp = {2014.07.30} } @TechReport{Donoho2004, Title = {Neighborly polytopes and sparse solution of underdetermined linear equations}, Author = {Donoho, David L.}, Institution = {Stanford University}, Year = {2004}, Bdsk-url-1 = {http://statweb.stanford.edu/~donoho/reports.html#2005}, Owner = {yhli}, Timestamp = {2014.07.30}, Url = {http://statweb.stanford.edu/~donoho/reports.html#2005} } @Article{Donoho2001a, Title = {Sparse components of images and optimal atomic decomposition}, Author = {D. L. Donoho}, Journal = {Constructive Approx.}, Year = {2001}, Pages = {353--382}, Volume = {17}, File = {:Papers/Donoho2001.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Donoho1993, Title = {Unconditional bases are optimal bases for data compression and for statistical estimation}, Author = {D. L. Donoho}, Journal = {App. Comp. Harmon. Anal.}, Year = {1993}, Pages = {100-115}, Volume = {1}, File = {:Papers/Donoho1993.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Donoho2001, Title = {Uncertainty principles and ideal atomic decomposition}, Author = {Donoho, David L. and Huo, Xiaoming}, Journal = {IEEE Trans. Inf. Theory}, Year = {2001}, Month = nov, Number = {7}, Pages = {2845--2862}, Volume = {47}, Owner = {yhli}, Timestamp = {2014.07.21} } @Article{Donoho2009, Title = {Message Passing Algorithms for Compressed Sensing}, Author = {David L. Donoho and Arian Maleki and Andrea Montanari}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2009}, Month = {Sept.}, Pages = {18914-18919}, Volume = {106}, Owner = {Jono}, Timestamp = {2014.08.29} } @Article{Donoho1989, Title = {Uncertainty principles and signal recovery}, Author = {Donoho, David L. and Stark, Philip B.}, Journal = {SIAM J. App. Math.}, Year = {1989}, Month = jun, Number = {3}, Pages = {906--931}, Volume = {49}, Owner = {yhli}, Timestamp = {2014.07.21} } @Article{Donoho2010, Title = {Precise undersampling theorems}, Author = {Donoho, David L. and Tanner, Jared}, Journal = {Proc. IEEE}, Year = {2010}, Month = jun, Number = {6}, Pages = {913--924}, Volume = {98}, Owner = {yhli}, Timestamp = {2014.07.30} } @Article{Donoho2009b, Title = {Counting faces of randomly projected polytopes when the projection radically lowers dimension}, Author = {Donoho, David L. and Tanner, Jared}, Journal = {J. Amer. Math. Soc.}, Year = {2009}, Month = jan, Number = {1}, Pages = {1--53}, Volume = {22}, Owner = {yhli}, Timestamp = {2014.07.30} } @Article{Donoho2005, Title = {Sparse nonnegative solution of underdetermined linear equations by linear programming}, Author = {Donoho, David L. and Tanner, Jared}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2005}, Month = jul, Number = {27}, Pages = {9446--9451}, Volume = {102}, Owner = {yhli}, Timestamp = {2014.07.31} } @Article{Donoho2008, Title = {Fast solution of $\ell_1$-norm minimization problems when the solution may be sparse}, Author = {Donoho, David L. and Tsaig, Yaakov}, Journal = {IEEE Trans. Inf. Theory}, Year = {2008}, Month = nov, Number = {11}, Pages = {4789--4812}, Volume = {54}, Owner = {yhli}, Timestamp = {2014.04.15} } @Article{Donoho2012, Title = {Sparse solution of underdetermined systems of linear equations by stagewise orthogonal matching pursuit}, Author = {Donoho, David L. and Tsaig, Yaakov and Drori, Iddo and Starck, Jean-Luc}, Journal = {IEEE Trans. Inf. Theory}, Year = {2012}, Month = feb, Number = {2}, Pages = {1094--1121}, Volume = {58}, Owner = {yhli}, Timestamp = {2014.04.15} } @Article{Dontchev1996, Title = {Characterizations of strong regularity for variational inequalities over polyhedral convex sets}, Author = {A. L. Dontchev and T. R. Rockafellar}, Journal = {SIAM J. Opt.}, Year = {1996}, Number = {4}, Pages = {1087--1105.}, Volume = {6}, File = {:Papers/Dontchev1996.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.07} } @Article{Doolittle1999, Title = {Lateral genomics}, Author = {W. F. Doolittle}, Journal = {Trends Cell Biol}, Year = {1999}, Month = {Dec}, Number = {12}, Pages = {M5--M8}, Volume = {9}, Abstract = {More than 20 complete prokaryotic genome sequences are now publicly available, each by itself an unparalleled resource for understanding organismal biology. Collectively, these data are even more powerful: they could force a dramatic reworking of the framework in which we understand biological evolution. It is possible that a single universal phylogenetic tree is not the best way to depict relationships between all living and extinct species. Instead a web- or net-like pattern, reflecting the importance of horizontal or lateral gene transfer between lineages of organisms, might provide a more appropriate visual metaphor. Here, I ask whether this way of thinking is really justified, and explore its implications.}, File = {Doolittle99LateralGenomics.pdf:BIO/Doolittle99LateralGenomics.pdf:PDF}, Keywords = {Evolution, Molecular; Genome; Phylogeny; Prokaryotic Cells; RNA, Ribosomal}, Owner = {luca}, Pii = {S0962-8924(99)01664-5}, Pmid = {10611671}, Timestamp = {2007.03.01} } @Article{DotanCohen2007, Title = {Hierarchical tree snipping: clustering guided by prior knowledge}, Author = {Dotan-Cohen, Dikla and Melkman, Avraham A. and Kasif, Simon}, Journal = {Bioinformatics}, Year = {2007}, Number = {24}, Pages = {3335-3342}, Volume = {23}, Abstract = {Motivation: Hierarchical clustering is widely used to cluster genes into groups based on their expression similarity. This method first constructs a tree. Next this tree is partitioned into subtrees by cutting all edges at some level, thereby inducing a clustering. Unfortunately, the resulting clusters often do not exhibit significant functional coherence. Results: To improve the biological significance of the clustering, we develop a new framework of partitioning by snippingcutting selected edges at variable levels. The snipped edges are selected to induce clusters that are maximally consistent with partially available background knowledge such as functional classifications. Algorithms for two key applications are presented: functional prediction of genes, and discovery of functionally enriched clusters of co-expressed genes. Simulation results and cross-validation tests indicate that the algorithms perform well even when the actual number of clusters differs considerably from the requested number. Performance is improved compared with a previously proposed algorithm. Availability: A java package is available at http://www.cs.bgu.ac.il/~dotna/ TreeSnipping Contact: dotna@cs.bgu.ac.il Supplementary information: Supplementary data are available at Bioinformatics online.}, Doi = {10.1093/bioinformatics/btm526}, Eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/23/24/3335.pdf}, File = {cohen07hierarchical.pdf:BIO/cohen07hierarchical.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.02.27}, Url = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/24/3335} } @Article{Doty1993, Title = {{A} {T}heory of {G}eneralized {I}nverses {A}pplied to {R}obotics}, Author = {K.L. Doty and C. Melchiorri and C. Bonivento}, Journal = {Int. J. Robotics Res.}, Year = {1993}, Number = {1}, Pages = {1--19}, Volume = {12}, Keywords = {serial manipulators, redundancy, pseudo inverse}, Owner = {qtrandin}, Timestamp = {2009.08.21} } @Article{Douglas1956, Title = {On the numerical solution of heat conduction problems in two and three space variables}, Author = {Douglas, Jim and Rachford, HH}, Journal = {Trans. Amer. Math. Soc.}, Year = {1956}, Number = {2}, Pages = {421--439}, Volume = {82}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Douma2005, Title = {Relations between uncertainty structures in identification for robust control}, Author = {Sippe G. Douma and Paul M.J. Van den Hof}, Journal = {Automatica}, Year = {2005}, Number = {3}, Pages = {439 - 457}, Volume = {41}, Doi = {10.1016/j.automatica.2004.11.005}, File = {Douma2005.pdf:Douma2005.pdf:PDF}, ISSN = {0005-1098}, Keywords = {Identification for control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0005109804003267} } @Article{Downs1993, Title = {{A} plant-wide industrial process control problem}, Author = {Downs, J.J. and Vogel, E.F.}, Journal = {Comp. Chem. Eng.}, Year = {1993}, Pages = {245--255}, Volume = {17}, File = {Downs1993.pdf:/Downs1993.pdf:PDF}, Keywords = {optimal control chemistry}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Drineas2006, Title = {Fast Monte Carlo algorithms for matrices II: Computing a low-rank approximation to a matrix}, Author = {Drineas, Petros and Kannan, Ravi and Mahoney, Michael W}, Journal = {SIAM Journal on Computing}, Year = {2006}, Number = {1}, Pages = {158--183}, Volume = {36}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Drineas2008, Title = {Relative-error CUR matrix decompositions}, Author = {Drineas, Petros and Mahoney, Michael W and Muthukrishnan, S}, Journal = {SIAM Journal on Matrix Anal. and Apps.}, Year = {2008}, Number = {2}, Pages = {844--881}, Volume = {30}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Drummond2010, Title = {Warning: statistical benchmarking is addictive. Kicking the habit in machine learning}, Author = {Drummond, Chris and Japkowicz, Nathalie}, Journal = {J. Exp. Theor. Artif. Intell.}, Year = {2010}, Month = mar, Number = {1}, Pages = {67--80}, Volume = {22}, Acmid = {1744684}, Address = {Bristol, PA, USA}, Doi = {10.1080/09528130903010295}, File = {drummond2010warning.pdf:Statistical Learning\\drummond2010warning.pdf:PDF}, ISSN = {0952-813X}, Issue_date = {March 2010}, Keywords = {algorithm evaluation, benchmarking, machine learning, null hypothesis tests}, Numpages = {14}, Owner = {jmscarlett}, Publisher = {Taylor \& Francis, Inc.}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1080/09528130903010295} } @Article{Du2006, Title = {A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.}, Author = {Jiang Du and Joel S Rozowsky and Jan O Korbel and Zhengdong D Zhang and Thomas E Royce and Martin H Schultz and Michael Snyder and Mark Gerstein}, Journal = {Bioinformatics}, Year = {2006}, Month = {Dec}, Number = {24}, Pages = {3016--3024}, Volume = {22}, Abstract = {MOTIVATION: Large-scale tiling array experiments are becoming increasingly common in genomics. In particular, the ENCODE project requires the consistent segmentation of many different tiling array datasets into 'active regions' (e.g. finding transfrags from transcriptional data and putative binding sites from ChIP-chip experiments). Previously, such segmentation was done in an unsupervised fashion mainly based on characteristics of the signal distribution in the tiling array data itself. Here we propose a supervised framework for doing this. It has the advantage of explicitly incorporating validated biological knowledge into the model and allowing for formal training and testing. Methodology: In particular, we use a hidden Markov model (HMM) framework, which is capable of explicitly modeling the dependency between neighboring probes and whose extended version (the generalized HMM) also allows explicit description of state duration density. We introduce a formal definition of the tiling-array analysis problem, and explain how we can use this to describe sampling small genomic regions for experimental validation to build up a gold-standard set for training and testing. We then describe various ideal and practical sampling strategies (e.g. maximizing signal entropy within a selected region versus using gene annotation or known promoters as positives for transcription or ChIP-chip data, respectively). RESULTS: For the practical sampling and training strategies, we show how the size and noise in the validated training data affects the performance of an HMM applied to the ENCODE transcriptional and ChIP-chip experiments. In particular, we show that the HMM framework is able to efficiently process tiling array data as well as or better than previous approaches. For the idealized sampling strategies, we show how we can assess their performance in a simulation framework and how a maximum entropy approach, which samples sub-regions with very different signal intensities, gives the maximally performing gold-standard. This latter result has strong implications for the optimum way medium-scale validation experiments should be carried out to verify the results of the genome-scale tiling array experiments.}, Doi = {10.1093/bioinformatics/btl515}, File = {BIO\\Du06SupervisedHiddenMarkov.pdf:BIO\\Du06SupervisedHiddenMarkov.pdf:PDF}, Keywords = {Artificial Intelligence; Biology; Chromosome Mapping; Databases, Genetic; Gene Expression Profiling; Information Storage and Retrieval; Markov Chains; Oligonucleotide Array Sequence Analysis; Pattern Recognition, Automated; Sequence Analysis, DNA; Transcription Factors; Transcription, Genetic}, Owner = {BaldaZen}, Pii = {btl515}, Pmid = {17038339}, Timestamp = {2007.02.07}, Url = {http://dx.doi.org/10.1093/bioinformatics/btl515} } @InBook{Duadi2011, Title = {Source: Holography, Research and Technologies}, Author = {Duadi, H. and Margalit, O. and Mico, V. and Rodrigo, J.A. and Alieva, T. and Garcia, J. and Zalevsky, Z.}, Chapter = {Digital holography and phase retrieval}, Editor = {Rosen, J.}, Publisher = {InTech}, Year = {2011}, Owner = {baldassarre}, Timestamp = {2012.09.27} } @Article{Duarte2012, Title = {Kronecker compressive sensing}, Author = {Duarte, M.F. and Baraniuk, R.G.}, Journal = {IEEE Trans. Image Proc.}, Year = {2012}, Number = {2}, Pages = {494--504}, Volume = {21}, File = {duarte2012kronecker.pdf:COMPRESSIVE SENSING/duarte2012kronecker.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Duarte2011, Title = {Structured compressed sensing: From theory to applications}, Author = {Duarte, M.F. and Eldar, Y.C.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2011}, Number = {9}, Pages = {4053--4085}, Volume = {59}, File = {duarte2011structured.pdf:COMPRESSIVE SENSING/duarte2011structured.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Duarte2008, Title = {Single-pixel imaging via compressive sampling}, Author = {Duarte, Marco F. and Davenport, Mark A. adn Takhar, Dharmpal and Laska, Jason N. and Sun, Ting and Kelly, Kevin F. and Baraniuk, Richard G.}, Journal = {IEEE Sig. Proc. Mag.}, Year = {2008}, Month = mar, Number = {2}, Pages = {83--91}, Volume = {25}, Owner = {yhli}, Timestamp = {2014.06.24} } @Conference{duarte2009recovery, Title = {Recovery of compressible signals in unions of subspaces}, Author = {Duarte, Marco F and Hegde, Chinmay and Cevher, Volkan and Baraniuk, Richard G}, Booktitle = {Conf. Inf. Sci. Sys. (CISS)}, Year = {2009}, Institution = {CISS} } @InProceedings{Duarte2008b, Title = {Wavelet-domain compressive signal reconstruction using a hidden Markov tree model}, Author = {Duarte, Marco F and Wakin, Michael B and Baraniuk, Richard G}, Booktitle = {IEEE Int. Conf. Acoustics, Speech, and Sig. Proc. (ICASSP)}, Year = {2008}, Organization = {IEEE}, Pages = {5137--5140}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Duchi2012, Title = {Dual Averaging for Distributed Optimization: Convergence Analysis and Network Scaling}, Author = {J.C. Duchi and A. Agarwal and M.J. Wainwright}, Journal = {IEEE Trans. Aut. Control}, Year = {2012}, Number = {3}, Pages = {592--606}, Volume = {57}, File = {:Papers/Duchi2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.27} } @Article{Duchi2012a, Title = {Projected subgradient methods for learning sparse gaussians.}, Author = {J. Duchi and S. Gould and D. Koller}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Duchi2012a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.16}, Url = {arXiv preprint: arXiv:1206.3249, 2012.} } @InProceedings{Duchi2008, Title = {Efficient projections onto the l1-ball for learning in high dimensions}, Author = {Duchi, John and Shalev-Shwartz, Shai and Singer, Yoram and Chandra, Tushar}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2008}, Address = {New York, NY, USA}, Pages = {272--279}, Publisher = {ACM}, Series = {ICML '08}, Acmid = {1390191}, Doi = {http://doi.acm.org/10.1145/1390156.1390191}, File = {duchi2008.pdf:Optimization\\duchi2008.pdf:PDF}, ISBN = {978-1-60558-205-4}, Location = {Helsinki, Finland}, Numpages = {8}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://doi.acm.org/10.1145/1390156.1390191} } @Article{Duff1986, Title = {{C}omputing the structural index}, Author = {Duff, I.S. and Gear, C.W.}, Journal = {{SIAM} Journal on Algebraic Discrete Methods}, Year = {1986}, Pages = {594--603}, Volume = {7}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Duff1996, Title = {{T}he design of {MA}48: {A} code for the direct solution of sparse unsymmetric linear systems of equations}, Author = {I.S. Duff and J.K. Reid}, Journal = {{ACM} Trans. on Math. Soft.}, Year = {1996}, Pages = {187--226}, Volume = {22}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Dughmi2011, Title = {Submodular functions: Extensions, distributions, and algorithms. a survey}, Author = {Dughmi, Shaddin}, Journal = {arXiv preprint arXiv:0912.0322}, Year = {2011}, File = {dughmi2011submodular.pdf:dughmi2011submodular.pdf:PDF}, Keywords = {submodular, combinatorial, optimimization}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Dung2009, Title = {Regularization algorithms for solving monotone equilibrium problems}, Author = {M. Le Dung and Q. Tran-Dinh}, Journal = {J. Opt. Theory and Apps.}, Year = {2009}, Pages = {185--204}, Volume = {124}, Owner = {quoctd}, Timestamp = {2013.11.13} } @Article{Dunn1989, Title = {{E}fficient {D}ynamic {P}rogramming {I}mplementations of {N}ewton's {M}ethod for {U}nconstrained {O}ptimal {C}ontrol {P}roblems}, Author = {J.C. Dunn and D.P. Bertsekas}, Journal = {J. Opt. Theory and Apps.}, Year = {1989}, Pages = {23--38}, Volume = {63}, Keywords = {optimal control indirect methods}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Dvoretzky1956, Title = {On stochastic approximation}, Author = {Dvoretzky, Aryeh}, Booktitle = {Berkeley Symp. Math. Stat. Prob.}, Year = {1956}, Pages = {39--55}, Volume = {1}, Owner = {yhli}, Timestamp = {2014.04.08} } @Article{Eaton1992, Title = {{M}odel predictive control of chemical processes}, Author = {Eaton, J. W. and Rawlings, J. B.}, Journal = {Chem. Eng. Sci.}, Year = {1992}, Number = {4}, Pages = {705--720}, Volume = {47}, Keywords = {NMPC chemistry optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Eckstein1994, Title = {Parallel alternating direction multiplier decomposition of convex programs}, Author = {J. Eckstein}, Journal = {J. Opt. Theory and Apps.}, Year = {1994}, Number = {1}, Pages = {39--62}, Volume = {80}, File = {:Papers/Eckstein1994.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.05.10} } @Article{Eckstein1993, Title = {Nonlinear proximal point algorithms using {B}regman functions, with applications to convex programming}, Author = {Eckstein, Jonathan}, Journal = {Math. Oper. Res.}, Year = {1993}, Number = {1}, Pages = {202--226}, Volume = {18}, Owner = {yhli}, Timestamp = {2014.04.29} } @PhdThesis{Eckstein1989, Title = {Splitting methods for monotone operators with applications to parallel optimization}, Author = {Eckstein, Jonathan}, School = {Massachusetts Institute of Technology}, Year = {1989}, Month = sep, Owner = {yhli}, Timestamp = {2014.11.17} } @Article{Eckstein1992a, Title = {On the {D}ouglas - {R}achford splitting method and the proximal point algorithm for maximal monotone operators}, Author = {J. Eckstein and D. Bertsekas}, Journal = {Math. Program.}, Year = {1992}, Pages = {293--318}, Volume = {55}, File = {:Papers/Eckstein1992.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Eckstein1992, Title = {On the {D}ouglas-{R}achford splitting method and the proximal point algorithm for maximal monotone operators}, Author = {Eckstein, Jonathan and Bertsekas, Dimitri P.}, Journal = {Math. Program.}, Year = {1992}, Pages = {293--318}, Volume = {55}, Owner = {yhli}, Timestamp = {2014.11.06} } @Article{Edelman2005, Title = {Random matrix theory}, Author = {Edelman, Alan and Rao, N. Raj}, Journal = {Acta Numer.}, Year = {2005}, Month = may, Pages = {1--65}, Volume = {14}, Owner = {yhli}, Timestamp = {2014.06.18} } @Book{Edgar2001, Title = {Optimization of Chemical Processes}, Author = {Edgar, T.F. and Himmelblau, D.M. and Lasdon, L.S.}, Publisher = {McGraw-Hill}, Year = {2001}, Address = {New York}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Efron2010, Title = {Large-Scale Inference}, Author = {Efron, Bradley}, Publisher = {Cambridge Univ. Press}, Year = {2010}, Address = {Cambridge, UK}, Owner = {yhli}, Timestamp = {2014.07.11} } @Article{Efron2004b, Title = {The estimation of prediction error: Covariance penalities and cross-validation}, Author = {Efron, Bradley}, Journal = {J. Amer. Math. Soc.}, Year = {2004}, Month = sep, Number = {467}, Pages = {619--632}, Volume = {99}, Owner = {yhli}, Timestamp = {2014.07.07} } @Article{Efron1986, Title = {How biased is the apparent error rate of a prediction rule?}, Author = {Efron, Bradley}, Journal = {J. Amer. Math. Soc.}, Year = {1986}, Number = {394}, Pages = {461--632}, Volume = {81}, Owner = {yhli}, Timestamp = {2014.07.07} } @Article{Efron2004, Title = {Least angle regression}, Author = {Efron, Bradley and Hastie, Trevor and Johnstone, Iain and Tibshirani, Robert}, Journal = {Ann. Stats.}, Year = {2004}, Number = {2}, Pages = {407--499}, Volume = {32}, Owner = {yhli}, Timestamp = {2014.04.15} } @Article{Efron1973, Title = {{S}tein's estimation rule and its competitors---An empirical {B}ayes approach}, Author = {Efron, Bradley and Morris, Carl}, Journal = {J. Amer. Math. Assoc.}, Year = {1973}, Month = mar, Number = {341}, Pages = {117--130}, Volume = {68}, Owner = {yhli}, Timestamp = {2014.07.11} } @Book{Efron1998, Title = {An Introduction to the Bootstrap}, Author = {Efron, Bradley and Tibshirani, Robert J.}, Publisher = {Chapman \& Hall/CRC}, Year = {1998}, Address = {Boca Raton}, Owner = {yhli}, Timestamp = {2014.07.11} } @Article{Egartner1999, Title = {{W}orking range optimization for turbine and compressor blading}, Author = {W. Egartner}, Journal = {J. Comp. App. Math.}, Year = {1999}, Number = {1-2}, Pages = {59--65}, Volume = {120}, Keywords = {mechanics optimization parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Misc{Ehrig2000, Title = {{LIMEX}}, Author = {Ehrig, R. and Nowak, U.}, HowPublished = {http://elib.zib.de/pub/elib/codelib/limex/}, Year = {2000}, Keywords = {ODE}, Owner = {quoctd}, Timestamp = {2013.08.23}, Volume = {4.2A} } @MastersThesis{Eich1987, Title = {{N}umerische {B}ehandlung semi-expliziter differentiell-algebraischer {G}leichungssysteme vom {I}ndex {I} mit {BDF} {V}erfahren}, Author = {Eich, E.}, School = {Universit\"at Bonn}, Year = {1987}, Address = {Bonn}, Keywords = {DAE mechanics optimization optimal control agbock}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Ekvall2004, Title = {Interactive Grasp Learning Based on Human Demonstration}, Author = {Ekvall, S. and Kragic, D.}, Booktitle = {IEEE Int. Conf. Robotics and Automation}, Year = {2004}, Organization = {Citeseer}, Pages = {3519--3524}, Volume = {4}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @InProceedings{ElHalabi2013, Title = {To convexify or not? Regression with clustering penalties on graphs}, Author = {El Halabi, M. and Baldassarre, L. and Cevher, V.}, Booktitle = {Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), 2013 IEEE 5th International Workshop on}, Year = {2013}, Organization = {IEEE}, Pages = {21--24}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{ElHalabi2014, Title = {A totally unimodular view of structured sparsity}, Author = {El Halabi, Marwa and Cevher, Volkan}, Journal = {preprint}, Year = {2014}, Note = {arXiv:1411.1990v1 [cs.LG]}, Owner = {yhli}, Timestamp = {2014.11.11} } @Article{Elad2002, Title = {A generalized uncertainty principle and sparse representation in pairs of bases}, Author = {Elad, Michael and Bruckstein, Alfred M.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2002}, Month = sep, Number = {9}, Pages = {2558--2567}, Volume = {48}, Owner = {yhli}, Timestamp = {2014.07.21} } @Article{Elad2007, Title = {Analysis versus synthesis in signal priors}, Author = {Elad, Michael and Milanfar, Peyman and Rubinstein, Ron}, Journal = {Inverse problems}, Year = {2007}, Number = {3}, Pages = {947}, Volume = {23}, File = {elad2007analysis.pdf:elad2007analysis.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IOP Publishing}, Timestamp = {2014.11.25} } @Article{Elad2005, Title = {Simultaneous cartoon and texture image inpainting using morphological component analysis ({MCA})}, Author = {Elad, M. and Starck, J.-L. and Querre, P. and Donoho, D. L.}, Journal = {App. Comp. Harmon. Anal.}, Year = {2005}, Pages = {340--358}, Volume = {19}, Owner = {yhli}, Timestamp = {2014.07.22} } @Article{Eldar2010, Title = {Block-sparse signals: Uncertainty relations and efficient recovery}, Author = {Eldar, Y.C. and Kuppinger, P. and Bolcskei, H.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2010}, Number = {6}, Pages = {3042--3054}, Volume = {58}, File = {eldar2010block.pdf:COMPRESSIVE SENSING/eldar2010block.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Eldar2009a, Title = {Robust recovery of signals from a structured union of subspaces}, Author = {Eldar, Y.C. and Mishali, M.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2009}, Number = {11}, Pages = {5302--5316}, Volume = {55}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Eldar2009, Title = {Generalized {SURE} for exponential families: Applications to regularization}, Author = {Eldar, Yonina C.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2009}, Month = feb, Number = {2}, Pages = {471--481}, Volume = {57}, Owner = {yhli}, Timestamp = {2014.07.07} } @Article{Eldar2011, Title = {Acceleration of randomized Kaczmarz method via the Johnson--Lindenstrauss Lemma}, Author = {Eldar, Yonina C and Needell, Deanna}, Journal = {Numerical Algorithms}, Year = {2011}, Number = {2}, Pages = {163--177}, Volume = {58}, File = {eldar2011acceleration.pdf:eldar2011acceleration.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @InProceedings{Elhamifar2011, Title = {Robust classification using structured sparse representation}, Author = {Elhamifar, Ehsan and Vidal, Ren{\'e}}, Booktitle = {Comp. Vis. Pattern Recog. (CVPR)}, Year = {2011}, Organization = {IEEE}, Pages = {1873--1879}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Elhamifar2009, Title = {Sparse subspace clustering}, Author = {Elhamifar, Ehsan and Vidal, Ren{\'e}}, Booktitle = {Comp. Vis. Pattern Recog. (CVPR)}, Year = {2009}, Organization = {IEEE}, Pages = {2790--2797}, File = {elhamifar2009sparse.pdf:elhamifar2009sparse.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @TechReport{Elisseeff1999, Title = {Margin error and generalization capabilities of multi-class discriminant systems}, Author = {Elisseeff, André and Paugam-Moisy, Hélène and Guermeur, Yann}, Institution = {NeuroCOLT}, Year = {1999}, File = {elisseeff99margin.pdf:Statistical Learning/Multiclass/elisseeff99margin.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.02.14} } @TechReport{Elkan, Title = {NAIVE BAYESIAN LEARNING}, Author = {Elkan}, Institution = {Harvard University, Department of Computer Science}, File = {naive-bayesian-learning.pdf:Statistical Learning/naive-bayesian-learning.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @InProceedings{Engel2005, Title = {Reinforcement learning with Gaussian processes}, Author = {Yaakov Engel and Shie Mannor and Ron Meir}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2005}, Pages = {201--208}, Publisher = {ACM Press}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Engell1993, Title = {{Nichtlineare} {Regelung} -- {Methoden}, {Werkzeuge}, {Anwendungen}}, Author = {Engell, S.}, Publisher = {{VDI}--{V}erlag}, Year = {1993}, Address = {D\"usseldorf}, Number = {1026}, Series = {Fortschritt--{B}erichte}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Engell2001, Title = {{O}nline {S}cheduling of {M}ultiproduct {B}atch {P}lants under {U}ncertainty}, Author = {S. Engell and A. M\"arkert and G. Sand and R. Schultz and C. Schulz}, Booktitle = {Online Optimization of Large Scale Systems: State of the Art}, Publisher = {Springer}, Year = {2001}, Editor = {M. Gr\"otschel and S.O. Krumke and J. Rambau}, Pages = {649--678}, Keywords = {robust chemistry optimal control online}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Engl1999, Title = {{N}umerical simulation and optimal control of air separation plants}, Author = {Engl, G. and Kr\"oner, A. and Kronseder, T. and von Stryk, O.}, Booktitle = {High Performance Scientific and Engineering Computing}, Publisher = {Springer}, Year = {1999}, Editor = {H.-J. Bungartz and F. Durst and Chr. Zenger}, Pages = {221--231}, Series = {Lecture Notes in Computational Science and Engineering}, Volume = {8}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Engl1996, Title = {Regularization of Inverse Problems}, Author = {Engl, Heinz W. and Hanke, Martin and Neubauer, Andreas}, Publisher = {Kluwer}, Year = {1996}, Owner = {baldazen}, Timestamp = {2008.09.04} } @Article{Enright1975, Title = {{C}omparing numerical methods of stiff systems of {ODE}s}, Author = {Enright, W. H. and Hull, T. E. and Lindberg, B.}, Journal = {BIT}, Year = {1975}, Pages = {10--48}, Volume = {15}, Keywords = {ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Epperly1997, Title = {{O}n the global and efficient solution of stochastic batch plant design problems}, Author = {Epperly, T. and M.G. Ierapetritou and E.N. Pistikopoulos}, Journal = {Comp. Chem. Eng.}, Year = {1997}, Pages = {1411--1431}, Volume = {21}, Keywords = {optimization chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Erdogan1999, Title = {Monotonic algorithms for transmission tomography}, Author = {Erdo{\v{g}}an, Hakan and Fessler, Jeffrey A.}, Journal = {IEEE Trans. Med. Imag.}, Year = {1999}, Month = sep, Number = {9}, Pages = {801--814}, Volume = {18}, Owner = {yhli}, Timestamp = {2014.08.19} } @Article{Esser2010, Title = {A general framework for a class of first order primal-dual algorithms for {TV}-minimization}, Author = {E. Esser and X. Zhang and T. Chan}, Journal = {SIAM J. Imaging Sciences}, Year = {2010}, Number = {4}, Pages = {1015--1046}, Volume = {3}, Owner = {quoctd}, Timestamp = {2013.07.04} } @PhdThesis{Esser2010a, Title = {Primal-dual algorithm for convex models and applications to image restoration, registration and nonlocal inpainting}, Author = {J. E. Esser}, School = {University of California, Los Angeles}, Year = {2010}, Address = {Los Angeles, USA}, Type = {PhD. thesis}, Owner = {quoctd}, Timestamp = {2014.01.17} } @Article{Evans1984, Title = {Differential Games and Representation Formulas for Solutions of {H}amilton-{J}acobi-{I}saacs equations}, Author = {L.C.~Evans and P.E.~Souganidis}, Journal = {Indiana Univ. Math. Journal}, Year = {1984}, Number = {5}, Pages = {773--797}, Volume = {33}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Evgeniou2005, Title = {Learning Multiple Tasks with Kernel Methods}, Author = {Theodoros Evgeniou and Charles A. Micchelli and Massimiliano Pontil}, Year = {2005}, Pages = {615--637}, Volume = {6}, Address = {Cambridge, MA, USA}, File = {evgeniou05multitask.pdf:Statistical Learning/Multitask/evgeniou05multitask.pdf:PDF}, ISSN = {1533-7928}, Owner = {baldazen}, Publisher = {MIT Press}, Timestamp = {2008.06.26} } @InProceedings{Evgeniou2004, Title = {Regularized multi-task learning}, Author = {Evgeniou, T. and Pontil, M.}, Booktitle = {KDD '04: Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining}, Year = {2004}, Address = {New York, NY, USA}, Pages = {109--117}, Publisher = {ACM}, Doi = {http://doi.acm.org/10.1145/1014052.1014067}, File = {evgeniou04regularizedmtl.pdf:Statistical Learning/Multitask/evgeniou04regularizedmtl.pdf:PDF}, ISBN = {1-58113-888-1}, Location = {Seattle, WA, USA}, Owner = {baldazen}, Timestamp = {2008.07.17} } @Article{Evgeniou2000, Title = {Regularization networks and support vector machines}, Author = {Evgeniou, T. and Pontil, M. and Poggio, T.}, Journal = {Adv. Comp. Math.}, Year = {2000}, Number = {1}, Pages = {1--50}, Volume = {13}, File = {poggio00svm.pdf:Statistical Learning/poggio00svm.pdf:PDF}, Owner = {baldassarre}, Publisher = {Springer}, Timestamp = {2009.10.21} } @Book{Facchinei2003, Title = {Finite-dimensional variational inequalities and complementarity problems}, Author = {F. Facchinei and J.-S. Pang}, Editor = {New York}, Publisher = {Springer-Verlag}, Year = {2003}, Volume = {1-2}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Other{Faculty2009, Title = {Spike time prediction - challenge C}, Author = {International Neuroinformatics Coordinating Faculty}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://incf.org/community/competitions/archive/spike-time-prediction/2009/challenge-c}, Year = {2009} } @Article{Fadili2011, Title = {Total variation projection with first order schemes}, Author = {Fadili, J.M. and Peyr\'e, G.}, Journal = {IEEE Trans. Image Proc.}, Year = {2011}, Number = {3}, Pages = {657--669}, Volume = {20}, File = {fadili2011total.pdf:Optimization\\fadili2011total.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Fahrmeir1985, Title = {Consistency and asymptotic normality of the maximum likelihood estimator in generalized linear models}, Author = {Fahrmeir, Ludwig and Kaufmann, Heinz}, Journal = {Ann. Stats.}, Year = {1985}, Number = {1}, Pages = {342--368}, Volume = {13}, Owner = {yhli}, Timestamp = {2014.02.14} } @Book{Fahrmeir2013, Title = {Regression}, Author = {Fahrmeir, Ludwig and Kneib, Thomas and Lang, Stefan and Marx, Brian}, Publisher = {Springer-Verl.}, Year = {2013}, Address = {Berlin}, Owner = {yhli}, Timestamp = {2014.06.19} } @Article{Falcone2008, Title = {Low Complexity {MPC} Schemes for Integrated Vehicle Dynamics Control Problems}, Author = {P. Falcone and F. Borrelli and J. Asgari and H.E. Tseng and D. Hrovat}, Journal = {9$^{th}$ International Symposium on Advanced Vehicle Control}, Year = {2008}, Address = {Kobe, Japan}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Fan2001, Title = {Variable selection via nonconcave penalized likelihood and its oracle properties}, Author = {Fan, Jianqing and Li, Runze}, Journal = {J. Amer. Math. Assoc.}, Year = {2001}, Number = {456}, Pages = {1348--1360}, Volume = {96}, Owner = {yhli}, Timestamp = {2014.02.14} } @Article{Fan2011, Title = {Nonconcave penalized likelihood with {NP}-dimensionality}, Author = {Fan, Jianqing and Lv, Jinchi}, Journal = {IEEE Trans. Inf. Theory}, Year = {2011}, Month = aug, Number = {8}, Pages = {5467--5484}, Volume = {57}, Owner = {yhli}, Timestamp = {2014.02.14} } @Article{Fan2004, Title = {Nonconcave penalized likelihood with a diverging number of parameters}, Author = {Fan, Jianqing and Peng, Heng}, Journal = {Ann. Stats.}, Year = {2004}, Number = {3}, Pages = {928--961}, Volume = {32}, Owner = {yhli}, Timestamp = {2014.09.08} } @Article{Fan1953, Title = {Minimax theorems}, Author = {Fan, Ky}, Journal = {Proc. Nat. Acad. Sci.}, Year = {1953}, Number = {1}, Pages = {42}, Volume = {39}, Owner = {jmscarlett}, Publisher = {National Academy of Sciences}, Timestamp = {2014.11.25} } @Book{Fang1997, Title = {Entropy Optimization and Math. Prog.}, Author = {S.-C. Fang and J. R. Rajasekera and H. S. J. Tsao}, Publisher = {Springer-Verlag}, Year = {1997}, Owner = {quoctd}, Timestamp = {2014.10.02} } @InProceedings{Fardad2010, Title = {On the dual decomposition of linear quadratic optimal control problems for vehicular formations}, Author = {Fardad, M. and Fu Lin and Jovanovic, M.R.}, Booktitle = {IEEE Conf. Decision and Control}, Year = {2010}, Month = {dec.}, Pages = {6287 -6292}, Doi = {10.1109/CDC.2010.5717487}, ISSN = {0743-1546}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Fares2002, Title = {{R}obust {C}ontrol via {S}equential {S}emidefinite {P}rogramming}, Author = {B. Fares and D. Noll and P. Apkarian}, Journal = {{SIAM} J. Control and Optimization}, Year = {2002}, Number = { 6}, Pages = {1791--1820}, Volume = {40}, Keywords = {robust semidefinite optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Farhat1990, Title = {{O}ptimization of multiple-fraction batch distillation by nonlinear programming}, Author = {S. Farhat and M. Czernicki and L. Pibouleau and S. Domenech}, Journal = {{AIChE} Journal}, Year = {1990}, Pages = {1349--1360}, Volume = {36}, Keywords = {chemistry optimization optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Fawzi2012, Title = {New lower bounds on nonnegative rank using conic programming}, Author = {H. Fawzi and P.A. Parrilo}, Institution = {Laboratory for Information and Decision Systems, Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, USA}, Year = {2012}, Type = {Tech. Report}, File = {:Papers/Fawzi2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26}, Url = {http://arxiv.org/abs/1210.6970} } @PhdThesis{Fazel2002, Title = {Matrix Rank Minimization with Applications}, Author = {Fazel, M.}, School = {Stanford University}, Year = {2002}, File = {fazel2002matrix.pdf:fazel2002matrix.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2012.09.20} } @InProceedings{Fazel2001, Title = {A rank minimization heuristic with application to minimum order system approximation}, Author = {Fazel, Maryam and Hindi, Haitham and Boyd, Stephen P}, Booktitle = {Amer. Control Conf. (ACC)}, Year = {2001}, Organization = {IEEE}, Pages = {4734--4739}, Volume = {6}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Feige1998, Title = {A threshold of ln n for approximating set cover}, Author = {Feige, Uriel}, Journal = {J. Amer. Chem. Soc.}, Year = {1998}, Number = {4}, Pages = {634--652}, Volume = {45}, Owner = {jmscarlett}, Publisher = {ACM}, Timestamp = {2014.11.25} } @Article{Feinstein1954, Title = {A new basic theorem of information theory}, Author = {Feinstein, A.}, Journal = {IRE Prof. Group. on Inf. Theory}, Year = {1954}, Month = {Sept.}, Number = {4}, Pages = {2-22}, Volume = {4}, Owner = {jmscarlett} } @TechReport{Feller1997, Title = {{N}onlinear {M}odel {P}redictive {C}ontrol of the {T}ennessee {E}astman {C}hallenge {P}rocess}, Author = {R. Feller}, Institution = {Lehrstuhl f\"ur Prozesstechnik, RWTH Aachen}, Year = {1997}, Number = {LPT-thes-1997-23}, Type = {External senior project}, Keywords = {NMPC optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Feller1968, Title = {{A}n {I}ntroduction to probability theory and its applications}, Author = {Feller, W.}, Publisher = {Wiley}, Year = {1968}, Address = {Chichester}, Edition = {3}, Volume = {2}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Ferrari2006, Title = {Simultaneous Object Recognition and Segmentation from Single or Multiple Model Views}, Author = {Ferrari, V. and Tuytelaars, T. and Van Gool, L}, Journal = {Int. J. Comp. Vision}, Year = {2006}, Number = {2}, Pages = {159--188}, Volume = {67}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{Ferris1998, Title = {Interfaces to PATH 3.0: Design, Implementation and Usage}, Author = {M. C. Ferris and T. S. Munson}, Year = {1998}, File = {ferris98interfaces.pdf:Statistical Learning/ferris98interfaces.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @InCollection{Fessler2000, Title = {Statistical image reconstruction methods for transmission tomography}, Author = {Fessler, Jeffrey A.}, Booktitle = {Handbook of Medical Imaging, Volume 2. Medical Image Processing and Analysis}, Publisher = {SPIE Press}, Year = {2000}, Address = {Bellingham}, Chapter = {1}, Editor = {Sonka, Milan and Fitzpatrick, J. Michael}, Pages = {1--70}, Owner = {yhli}, Timestamp = {2014.08.19} } @Book{Feynman1963, Title = {{T}he {F}eynman {L}ectures on {P}hysics, vol. {I}}, Author = {R.P. Feynman and R.B. Leighton and M. Sands}, Publisher = {Addison--Wesley}, Year = {1963}, Address = {Reading, MA}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Fiacco1987, Title = {{N}onlinear {P}rogramming: {S}equential {U}nconstrained {M}inimization {T}echniques}, Author = {A.V. Fiacco and G.P. McCormick}, Publisher = {Society for Industrial Mathematics}, Year = {1987}, Owner = {quoctd}, Timestamp = {2012.04.12} } @Article{Fiacco1990, Title = {{N}onlinear {P}rogramming: {S}equential {U}nconstrained {M}inimization {T}echniques}, Author = {Fiacco, A.V. and McCormick, G. P.}, Journal = {{SIAM} publications}, Year = {1990}, Keywords = {optimization SQP, OPTEC-library}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Fienup1982, Title = {Phase retrieval algorithms: a comparison}, Author = {Fienup, J.}, Journal = {App. optics}, Year = {1982}, Number = {15}, Pages = {2758--2769}, Volume = {21}, Owner = {jmscarlett}, Publisher = {Optical Society of America}, Timestamp = {2014.11.25} } @Article{Figueiredo2007, Title = {Gradient Projection for Sparse Reconstruction: Application to Compressed Sensing and Other Inverse Problems}, Author = {Figueiredo, M.A.T. and Nowak, R.D. and Wright, S.J.}, Journal = {IEEE J. Sel. Topics Sig. Proc.}, Year = {2007}, Month = {dec. }, Number = {4}, Pages = {586 -597}, Volume = {1}, Doi = {10.1109/JSTSP.2007.910281}, ISSN = {1932-4553}, Keywords = {Barzilai-Borwein method;bound-constrained quadratic programming;compressed sensing;convex optimization;gradient projection;inverse problems;least absolute shrinkage selection operator;line search parameters;quadratic error;regularization;signal processing;sparse reconstruction;sparseness-inducing regularization;statistical inference;wavelet-based deconvolution;deconvolution;inverse problems;optimisation;signal reconstruction;statistical analysis;}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Filippov1964, Title = {{D}ifferential {E}quations with discontinuous right hand side}, Author = {Filippov, A.F.}, Journal = {AMS Transl.}, Year = {1964}, Pages = {199--231}, Volume = {42}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @MastersThesis{Findeisen1997, Title = {{M}oving horizon estimation of discrete time systems}, Author = {P.K. Findeisen}, School = {University of Wisconsin-Madison}, Year = {1997}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Findeisen2000, Title = {{N}onlinear model predictive control for index--one {DAE} systems}, Author = {Findeisen, R. and Allg\"ower, F. }, Booktitle = {Nonlinear Predictive Control}, Year = {2000}, Address = {Basel Boston Berlin}, Editor = {Allg\"ower, F. and Zheng, A.}, Pages = {145--162}, Publisher = {Birkh\"auser}, Key = {ISBN 3-7643-6297-9}, Keywords = {NMPC optimal control DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Unpublished{Findeisen2003, Title = {{C}omputational {D}elay in {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {R. Findeisen and F. Allg\"ower}, Note = {Proc. Int. Symp. Adv. Control of Chemical Processes, ADCHEM}, Year = {2003}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Unpublished{Findeisen2000a, Title = {{E}fficient {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {Findeisen, R. and Allg\"ower, F. and Diehl, M. and Bock, H.G. and Schl\"oder, J.P. and Nagy, Z.}, Year = {2000}, Booktitle = {6th International Conference on Chemical Process Control -- {CPC VI}}, Citeseerurl = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.16.5440}, File = {Findeisen2000a.PDF:Findeisen2000a.PDF:PDF}, Keywords = {agbockNMPC optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.16.5440} } @InProceedings{Findeisen2002, Title = {{E}fficient output feedback nonlinear model predictive control}, Author = {R. Findeisen and M. Diehl and T. B\"urner and F. Allg\"ower and H.G. Bock and J.P. Schl\"oder}, Booktitle = {Proc. Amer. Contr. Conf.}, Year = {2002}, Address = { Anchorage}, Pages = {4752--4757}, Doi = {10.1109/ACC.2002.1025410}, File = {Findeisen2002.pdf:Findeisen2002.pdf:PDF}, Keywords = {agbockNMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1025410} } @InProceedings{Findeisen2002a, Title = {{C}omputation and {P}erformance {A}ssesment of {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {Findeisen, R. and Diehl, M. and Uslu, I. and Schwarzkopf, S. and Allg\"ower, F. and Bock, H.G. and Schl\"oder, J.P. and E.D. Gilles}, Booktitle = cdc42, Year = {2002}, Address = {Las Vegas, USA}, Pages = {4613--4618}, Doi = {10.1109/CDC.2002.1185105}, File = {Findeisen2002a.pdf:Findeisen2002a.pdf:PDF}, Keywords = {agbockNMPC optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1185105} } @InProceedings{Findeisen2003b, Title = {{T}owards a {S}ampled-{D}ata {T}heory for {N}onlinear {M}odel {P}redictive {C}ontrol}, Author = {Findeisen, R. and Imsland, L. and Allg\"ower, F. and Foss, B.A.}, Booktitle = {New Trends in Nonlinear Dynamics and Control}, Year = {2003}, Address = {New York}, Editor = {Kang, W. and Borges, C. and Xiao, M.}, Pages = {295--313}, Publisher = {Springer-Verlag}, Series = {Lecture Notes in Control and Information Sciences}, Volume = {295}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Pubtype = {journalsbooks}, Timestamp = {2013.08.23} } @Article{Findeisen2003a, Title = {{S}tate and {O}utput {F}eedback {N}onlinear {M}odel {P}redictive {C}ontrol: {A}n {O}verview}, Author = {Findeisen, R. and Imsland, L. and Allg\"ower, F. and Foss, B.A.}, Journal = {European J. Control}, Year = {2003}, Number = {2-3}, Pages = {190--207}, Volume = {9}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Misc{Findeisen2002b, Title = {{O}n the {R}obustness of {C}ontinuous {T}ime {M}odel {P}redictive {C}ontrol}, Author = {Findeisen, R. and Imsland, L. and Allg\"ower, F. and Foss, B.A.}, HowPublished = {Workshop on Nonlinear Predictive Control, Oxford, UK}, Month = {May 9th}, Year = {2002}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Pubtype = {talk}, Timestamp = {2013.08.23} } @Book{Fischer2000, Title = {{L}ineare {A}lgebra}, Author = {G. Fischer}, Publisher = {Vieweg}, Year = {2000}, Address = {Wiesbaden}, Edition = {12}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Fischer1990, Title = {{M}athematik f\"ur {P}hysiker. {B}and 1: {G}rundkurs.}, Author = {H. Fischer and H. Kaul}, Publisher = {Teubner}, Year = {1990}, Address = {Stuttgart}, Edition = {2}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Fisher1922a, Title = {On the interpretation of $\chi$ 2 from contingency tables, and the calculation of P}, Author = {Fisher, R.A.}, Journal = {J. Royal Stat. Soc.}, Year = {1922}, Number = {1}, Pages = {87--94}, Volume = {85}, Owner = {jmscarlett}, Publisher = {JSTOR}, Timestamp = {2014.11.25} } @Article{Fisher1922, Title = {On the mathematical foundations of theoretical statistics}, Author = {Fisher, R. A.}, Journal = {Phil. Trans. R. Soc. Lond. A}, Year = {1922}, Pages = {309--368}, Volume = {222}, Owner = {yhli}, Timestamp = {2014.07.28} } @Article{Flammia2012, Title = {Quantum tomography via compressed sensing: Error bounds, sample complexity and efficient estimators}, Author = {Flammia, Steven T. and Gross, David and Liu, Yi-Kai and Eisert, Jens}, Journal = {New J. Phys.}, Year = {2012}, Volume = {14}, Owner = {yhli}, Timestamp = {2014.05.13} } @Article{Fletcher2009, Title = {Necessary and Sufficient Conditions for Sparsity Pattern Recovery}, Author = {Fletcher, A.K. and Rangan, S. and Goyal, V.K.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2009}, Month = {Dec.}, Number = {12}, Pages = {5758-5772}, Volume = {55}, Doi = {10.1109/TIT.2009.2032726}, ISSN = {0018-9448}, Keywords = {Gaussian processes;matrix algebra;maximum likelihood estimation;signal detection;Gaussian measurement matrices;Lasso;asymptotically reliable detection;k-sparse vector;maximum correlation;maximum-likelihood estimation;orthogonal matching pursuit;random noisy measurement;signal detection;signal-to-noise ratio;sparsity pattern recovery;thresholding algorithm;Additive noise;Matching pursuit algorithms;Maximum likelihood detection;Maximum likelihood estimation;Noise level;Noise measurement;Signal processing;Sparse matrices;Sufficient conditions;Vectors;Compressed sensing;Lasso;convex optimization;maximum-likelihood (ML) estimation;orthogonal matching pursuit (OMP);random matrices;random projections;sparse approximation;subset selection;thresholding}, Owner = {jmscarlett} } @TechReport{Fletcher2005a, Title = {A new low rank quasi-{N}ewton update scheme for nonlinear programming}, Author = {R. Fletcher}, Year = {2005}, Number = {NA/223}, Type = {Tech. Report. / Numerical Analysis}, File = {:Papers/Fletcher2005.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @InCollection{Fletcher2005b, Title = {On the Barzilai-Borwein method}, Author = {Fletcher, Roger}, Booktitle = {Optimization and control with applications}, Publisher = {Springer}, Year = {2005}, Pages = {235--256}, File = {fletcher2005barzilai.pdf:fletcher2005barzilai.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @TechReport{Fletcher2001, Title = {On the {B}arzilai-{B}orwein method}, Author = {R. Fletcher}, Year = {2001}, Number = {NA/207}, Type = {Numerical Analysis Report}, File = {:Papers/Fletcher2001.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Fletcher1971, Title = {{A} general quadratic programming algorithm}, Author = {R. Fletcher}, Journal = {J. Inst. Math. Apps.}, Year = {1971}, Pages = {76--91}, Volume = {7}, Keywords = {optimization SQP}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Fleury1991, Title = {Sequential convex programming for structural optimization problems}, Author = {C. Fleury}, Booktitle = {Optimization of large structural systems; Proceedings of the NATO/DFG Advanced Study Institute}, Year = {1991}, Address = {Berchtesgaden, Germany}, Month = {Oct. 4}, Pages = {531--533}, Volume = {1}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Floreano2007, Title = {Evolutionary Conditions for the Emergence of Communication in Robots}, Author = {Dario Floreano and Sara Mitri and Stephane Magnenat and Laurent Keller}, Journal = {Current Biology}, Year = {2007}, Pages = {1-6}, Volume = {17}, File = {Floreano07Evolutionary.pdf:Emergence/Floreano07Evolutionary.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.27} } @Book{Floudas1995, Title = {{N}onlinear and {M}ixed-{I}nteger {O}ptimization - {F}undamentals and {A}pplications}, Author = {Floudas, C.A.}, Publisher = {University Press}, Year = {1995}, Address = {Oxford}, Series = {Topics in Chemical Engineering}, Keywords = {MINLP global optimization, OPTEC-library}, Owner = {quoctd}, Timestamp = {2012.11.25} } @Article{Folland1997, Title = {The uncertainty principle: A mathematical survey}, Author = {Folland, Gerald B. and Sitaram, Alladi}, Journal = {J. Fourier Anal. App.}, Year = {1997}, Number = {3}, Pages = {207--238}, Volume = {3}, Owner = {yhli}, Timestamp = {2014.07.21} } @Article{Fontes2000, Title = {{A} general framework to design stabilizing nonlinear model predictive controllers}, Author = {Fontes, F.A.}, Journal = {Sys. Control Lett.}, Year = {2000}, Number = {2}, Pages = {127--143}, Volume = {42}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Fontes2003, Title = {{M}in-{M}ax {M}odel {P}redictive {C}ontrol {O}f {N}onlinear {S}ystems {U}sing {D}iscontinuous {F}eedbacks}, Author = {F.A. Fontes and L. Magni}, Journal = {IEEE Trans. Aut. Control}, Year = {2003}, Pages = {1750--1755}, Volume = {48}, Keywords = {optimal control NMPC hybrid}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Forster1996, Title = {{A}nalysis {II}}, Author = {Forster}, Publisher = {Vieweg}, Year = {1996}, Address = {Wiesbaden}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Fortin1983, Title = {Chapter {III} On Decomposition-Coordination Methods Using an Augmented Lagrangian}, Author = {M. Fortin and R. Glowinski}, Booktitle = {Augmented Lagrangian Methods: Applications to the Numerical Solution of Boundary-Value Problems}, Publisher = {Elsevier}, Year = {1983}, Editor = {Michel Fortin and Roland Glowinski}, Pages = {97-146}, Series = {Studies in Mathematics and Its Applications}, Volume = {15}, Doi = {DOI: 10.1016/S0168-2024(08)70028-6}, ISSN = {0168-2024}, Keywords = {distributed optimization}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/B8GY5-4SF9SB4-6/2/63c22e6aa9122d0e05176adc9855a84b} } @Article{Foucart2011, Title = {Hard thresholding pursuit: an algorithm for compressive sensing}, Author = {Foucart, S.}, Journal = {SIAM J. Num. Anal.}, Year = {2011}, Number = {6}, Pages = {2543--2563}, Volume = {49}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Book{Foucart2013, Title = {A Mathematical Introduction to Compressive Sensing}, Author = {Simon Foucart and Holger Rauhut}, Publisher = {Springer New York}, Year = {2013}, Owner = {jms265}, Timestamp = {2014.08.28} } @Article{Foygel2014, Title = {Corrupted sensing: Novel guarantees for separating structured signals}, Author = {Foygel, Rina and Mackey, Lester}, Year = {2014}, Note = {arXiv:1305.2524v2 [cs.IT]}, Owner = {yhli}, Timestamp = {2014.08.04} } @Article{Frederic2012, Title = {Design and operations of gas transmission networks}, Author = {B. Fr\'{e}d\'{e}ric and Y. Nesterov and J.-Ph. Vial}, Journal = {Oper. Res.}, Year = {2012}, Number = {1}, Pages = {34--47}, Volume = {60}, File = {:Papers/Frederic2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @TechReport{Fraikin2005, Title = {Correlation between two projected matrices under isometry constraints}, Author = {C. Fraikin and Y. Nesterov and P. Van Dooren}, Institution = {UCL}, Year = {2005}, Number = {2005/80}, Type = {CORE Discussion Paper}, File = {:Papers/Nesterov2005.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Franceschini2008, Title = {Model-based design of experiments for parameter precision: State of the art}, Author = {Franceschini, G. and Macchietto, S.}, Journal = {Chem. Eng. Sci.}, Year = {2008}, Number = {19}, Pages = {4846--4872}, Volume = {63}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Franke2002, Title = {{O}ptimal {C}ontrol of the {D}riving of {T}rains}, Author = {R. Franke and M. Meyer and P. Terwiesch}, Journal = {Automatisierungstechnik}, Year = {2002}, Number = {12}, Pages = {606--614}, Volume = {50}, Keywords = {optimal control MIOC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Freddebeul1998, Title = {{A}-{BDF}: {A} {G}eneralization of the backward differentiation formula}, Author = {Freddebeul, C.}, Journal = {{SIAM} J. Numer. Anal.}, Year = {1998}, Number = {5}, Pages = {1917--1938}, Volume = {35}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Freund2003, Title = {{A} sensitivity analysis and a convergence result for a sequential semidefinite programming method}, Author = {R.W. Freund and F. Jarre}, Institution = {Bell Laboratories}, Year = {2003}, Address = {Murray Hill}, Keywords = {optimization semidefinite}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Freund2007, Title = {Nonlinear semidefinite programming: sensitivity, convergence, and an application in passive reduced-order modeling}, Author = {R.W. Freund and F. Jarre and C.H. Vogelbusch}, Journal = {Math. Program., Ser. B.}, Year = {2007}, Pages = {581--611}, Volume = {109}, File = {:Papers/Freund2007.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.07} } @Article{Frey2007, Title = {Clustering by passing messages between data points.}, Author = {Brendan J Frey and Delbert Dueck}, Journal = {Science}, Year = {2007}, Month = {Feb}, Number = {5814}, Pages = {972--976}, Volume = {315}, Abstract = {Clustering data by identifying a subset of representative examples is important for processing sensory signals and detecting patterns in data. Such "exemplars" can be found by randomly choosing an initial subset of data points and then iteratively refining it, but this works well only if that initial choice is close to a good solution. We devised a method called "affinity propagation," which takes as input measures of similarity between pairs of data points. Real-valued messages are exchanged between data points until a high-quality set of exemplars and corresponding clusters gradually emerges. We used affinity propagation to cluster images of faces, detect genes in microarray data, identify representative sentences in this manuscript, and identify cities that are efficiently accessed by airline travel. Affinity propagation found clusters with much lower error than other methods, and it did so in less than one-hundredth the amount of time.}, Doi = {10.1126/science.1136800}, File = {Frey07Clustering.pdf:Statistical Learning/Frey07Clustering.pdf:PDF}, Owner = {luca}, Pii = {1136800}, Pmid = {17218491}, Timestamp = {2007.02.21}, Url = {http://dx.doi.org/10.1126/science.1136800} } @Article{Friedlander1995, Title = {A new method for large-scale box constrained convex quadratic minimization problems}, Author = {Friedlander, A. and Mart{\i}nez, JM and Raydan, M.}, Journal = {Opt. Methods and Softw.}, Year = {1995}, Pages = {57--74}, Volume = {5}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Unpublished{Friedlander2014, Title = {Tail bounds for stochastic approximation}, Author = {Friedlander, Michael P. and Goh, Gabriel}, Note = {arXiv:1304.5586v2 [math.OC]}, Month = jan, Year = {2014}, Owner = {yhli}, Timestamp = {2014.04.01} } @Article{Friedman2010, Title = {A note on the group lasso and a sparse group lasso}, Author = {Friedman, J. and Hastie, T. and Tibshirani, R.}, Journal = {arXiv preprint arXiv:1001.0736}, Year = {2010}, File = {friedman2010note.pdf:Statistical Learning/SPARSITY/friedman2010note.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Friedman2008, Title = {Sparse inverse covariance estimation with the graphical lasso}, Author = {Friedman, J. and Hastie, T. and Tibshirani, R.}, Journal = {Biostatistics}, Year = {2008}, Number = {3}, Pages = {432--441}, Volume = {9}, Owner = {quoctd}, Publisher = {Biometrika Trust}, Timestamp = {2013.01.10} } @Article{Frome1983, Title = {The analysis of rates using {P}oisson regression models}, Author = {Frome, E. L.}, Journal = {Biom.}, Year = {1983}, Pages = {665--674}, Volume = {39}, Owner = {yhli}, Timestamp = {2014.09.01} } @Book{Fujishige2005, Title = {Submodular functions and optimization}, Author = {Fujishige, S.}, Publisher = {Elsevier Science}, Year = {2005}, Volume = {58}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Fujishige2011, Title = {A submodular function minimization algorithm based on the minimum-norm base}, Author = {Fujishige, S. and Isotani, S.}, Journal = {Pac. J. Opt.}, Year = {2011}, Number = {1}, Pages = {3--17}, Volume = {7}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Fujishige2001, Title = {Realization of set functions as cut functions of graphs and hypergraphs}, Author = {Fujishige, S. and Patkar, S.}, Journal = {Discrete Math.}, Year = {2001}, Number = {1}, Pages = {199--210}, Volume = {226}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Misc{Fukud2003, Title = {cdd and cddplus {H}omepage}, Author = {K. Fukuda}, HowPublished = {http://www.cs.mcgill.ca/\ {}fukuda/soft/cdd\_home/cdd.html}, Month = {July}, Year = {2003}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Misc{Fukud2000, Title = {{F}requently {A}sked {Q}uestions in {P}olyhedral {C}omputation}, Author = {K. Fukuda}, HowPublished = {http://www.ifor.math.ethz.ch/\ { }fukuda/polyfaq/polyfaq.html}, Month = {October}, Year = {2000}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Fukuda2002, Title = {Lagrangian dual interior-point methods for semidefinite programs}, Author = {M. Fukuda and M. Kojima and M. Shida}, Journal = {SIAM J. Opt.zation}, Year = {2002}, Pages = {1007--1031}, Volume = {12}, File = {:Papers/Fukuda2002.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Fukushima1992, Title = {Application of the alternating direction method of multipliers to separable convex programming problems}, Author = {Fukushima, M.}, Journal = {Comp. Opt. Apps.}, Year = {1992}, Number = {1}, Pages = {93--111}, Volume = {1}, File = {:Papers/Fukushima1992.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.07.30} } @Article{Fukushima1992a, Title = {Equivalent differentiable optimization problems and descent methods for asymmetric variational inequality problems}, Author = {Fukushima, M.}, Journal = {Math. Program.}, Year = {1992}, Pages = {99--110}, Volume = {53}, Owner = {quoctd}, Timestamp = {2014.03.28} } @Article{Fukushima1996, Title = {A parallel descent algorithm for convex programming}, Author = {M. Fukushima and M. Haddou and N. Van Hien and J.J. Strodiot and T. Sugimoto and E. Yamakawa}, Journal = {Comp. Opt. Apps.}, Year = {1996}, Number = {1}, Pages = {5--37}, Volume = {5}, File = {:Papers/Fukushima1996.ps:PostScript}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Fukushima2003, Title = {A sequential quadratically constrained quadratic programming method for differentiable convex minimization}, Author = {M. Fukushima and Z.Q. Lui and P. Tseng}, Journal = {SIAM J. Opt.}, Year = {2003}, Number = {4}, Pages = {1098--1119}, Volume = {13}, Owner = {quoctd}, Timestamp = {2013.01.08} } @Article{Fukushima1981, Title = {A generalized proximal point algorithm for certain non-convex minimization problems}, Author = {Fukushima, M. and Mine, H.}, Journal = {International J. Sys. Sci.}, Year = {1981}, Number = {8}, Pages = {989--1000}, Volume = {12}, Owner = {jmscarlett}, Publisher = {Taylor \& Francis}, Timestamp = {2014.11.25} } @Article{Fuller2008, Title = {Bendersdecomposition for a class of variational inequalities}, Author = {J.D. Fuller and W. Chung}, Journal = {European J. Op. Res.}, Year = {2008}, Number = {1}, Pages = {76--91}, Volume = {185}, File = {:Papers/Fuller2008.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @InProceedings{Fury2006, Title = {Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion}, Author = {Fury, W. and Batliwalla, F. and Gregersen, P.K. and Li, W.}, Booktitle = {Engineering in Medicine and Biology Society, 2006. EMBS'06. 28th Annual International Conference of the IEEE}, Year = {2006}, Organization = {IEEE}, Pages = {5531--5534}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @PhdThesis{FuselierJr2006, Title = {Refined error estimates for matrix-valued radial basis functions}, Author = {Fuselier Jr, E.J.}, School = {Texas A\&M University}, Year = {2006}, File = {fuselier2006refined.pdf:Statistical Learning/Vector-valued/fuselier2006refined.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Gueler1992, Title = {New proximal point algorithms for convex minimization}, Author = {G{\"u}ler, O.}, Journal = {SIAM J. Opt.}, Year = {1992}, Pages = {649}, Volume = {2}, File = {guler1992.pdf:Optimization\\guler1992.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Gueler1991, Title = {On the convergence of the proximal point algorithm for convex minimization}, Author = {G\"{u}ler, Osman}, Journal = {SIAM J. Control Opt.}, Year = {1991}, Month = mar, Number = {2}, Pages = {403--419}, Volume = {29}, Owner = {yhli}, Timestamp = {2014.02.26} } @TechReport{Guenzel2012, Title = {Convex Quadratic Optimization is Universal in Nonlinear Optimization}, Author = {H. G\"{u}nzel}, Institution = {Department of Mathematics – C, RWTH Aachen University, Germany}, Year = {2012}, Type = {Tech. Report}, File = {:Papers/Gunzel2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26}, Url = {http://arxiv.org/abs/1210.6817} } @Article{Gabasov1996, Title = {{C}losable {F}eedback for {G}uaranteed {O}ptimization of {U}ndeterminate {S}ystems of {C}ontrol}, Author = {Gabasov, R. and Kirillova, F.M. and Kostina, E.A.}, Journal = {Doklady Mathematics}, Year = {1996}, Number = {2}, Pages = {305--308}, Volume = {53}, Keywords = {optimal control NMPC robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gabay1976, Title = {A dual algorithm for the solution of nonlinear variational problems via finite element approximation}, Author = {D. Gabay and B. Mercier}, Journal = {Comp. Math. with Apps.}, Year = {1976}, Number = {1}, Pages = {17 - 40}, Volume = {2}, Doi = {10.1016/0898-1221(76)90003-1}, ISSN = {0898-1221}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/0898122176900031} } @Article{Gallese1996, Title = {Action Recognition in the Premotor Cortex}, Author = {Gallese, V. and Fadiga, L. and Fogassi, L. and Rizzolatti, G.}, Journal = {Brain}, Year = {1996}, Pages = {593-609}, Volume = {119}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @TechReport{Gancarova2012, Title = {A robust robust optimization result}, Author = {M. Gancarova and M.J. Todd}, Year = {2012}, Type = {Tech. Report.}, File = {:Papers/Gancarova2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @InProceedings{Gao2012, Title = {Spatial Predictive Control for Agile Semi-Autonomous Ground Vehicles}, Author = {Y. Gao and A. Gray and J. V. Frasch and T. Lin and E. Tseng and J.K. Hedrick and F. Borrelli}, Booktitle = {Proc. Int. Symp. Adv. Vehicle Control}, Year = {2012}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Garcia1986, Title = {{Q}uadratic programming solution of dynamic matrix control ({QDMC})}, Author = {Garc{\'\i}a, C.E. and Morshedi, A.M.}, Journal = {Chem. Eng. Comms.}, Year = {1986}, Pages = {73--87}, Volume = {46}, Keywords = {optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Garcia1989, Title = {{M}odel {P}redictive {C}ontrol: {T}heory and {P}ractice -- a {S}urvey}, Author = {C.E. Garc\'{\i}a and D.M. Prett and M. Morari}, Journal = {Automatica}, Year = {1989}, Pages = {335ff }, Volume = {25}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Garg2009, Title = {Gradient descent with sparsification: An iterative algorithm for sparse recovery with restricted isometry property}, Author = {Garg, Rahul and Khandekar, Rohit}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2009}, Pages = {337--344}, Owner = {yhli}, Timestamp = {2014.03.24} } @Article{Garrett-Mayer2008, Title = {Cross-study validation and combined analysis of gene expression microarray data}, Author = {Garrett-Mayer, Elizabeth and Parmigiani, Giovanni and Zhong, Xiaogang and Cope, Leslie and Gabrielson, Edward}, Journal = {Biostat}, Year = {2008}, Number = {2}, Pages = {333-354}, Volume = {9}, Abstract = {Investigations of transcript levels on a genomic scale using hybridization-based arrays have led to formidable advances in our understanding of the biology of many human illnesses. At the same time, these investigations have generated controversy because of the probabilistic nature of the conclusions and the surfacing of noticeable discrepancies between the results of studies addressing the same biological question. In this article, we present simple and effective data analysis and visualization tools for gauging the degree to which the findings of one study are reproduced by others and for integrating multiple studies in a single analysis. We describe these approaches in the context of studies of breast cancer and illustrate that it is possible to identify a substantial biologically relevant subset of the human genome within which hybridization results are reliable. The subset generally varies with the platforms used, the tissues studied, and the populations being sampled. Despite important differences, it is also possible to develop simple expression measures that allow comparison across platforms, studies, laboratories and populations. Important biological signals are often preserved or enhanced. Cross-study validation and combination of microarray results requires careful, but not overly complex, statistical thinking and can become a routine component of genomic analysis.}, Doi = {10.1093/biostatistics/kxm033}, Eprint = {http://biostatistics.oxfordjournals.org/cgi/reprint/9/2/333.pdf}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://biostatistics.oxfordjournals.org/cgi/content/abstract/9/2/333} } @Article{Gattu1992, Title = {{N}onlinear quadratic dynamic matrix control with state estimation}, Author = {G. Gattu and E. Zafiriou}, Journal = {Ind. Eng. Chem. Res.}, Year = {1992}, Number = {4}, Pages = {1096--1104}, Volume = {31}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Gattu1992a, Title = {{O}n the stability of nonlinear quadratic dynamic matrix control}, Author = {G. Gattu and E. Zafiriou}, Booktitle = {Proc. of the IFAC Symposium DYCORD+'92}, Year = {1992}, Address = {College Park, U.S.A.}, Keywords = {optimal control NMPC robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gauvin1988, Title = {Directional behaviour of optimal solutions in nonlinear mathematicalprogramming}, Author = {J. Gauvin and R. Janin}, Journal = {Math. Oper. Res.}, Year = {1988}, Number = {4}, Pages = {629--649}, Volume = {13}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Ge1983, Title = {{T}he convergence of variable metric matrices in unconstraint optimization}, Author = {Ge, R.-P. and Powell, M.J.D.}, Journal = {Math. Prog.}, Year = {1983}, Pages = {123--143}, Volume = {27}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gear1990, Title = {{D}ifferential algebraic equations, indices, and integral algebraic equations}, Author = {Gear, C.W.}, Journal = {{SIAM} J. Numer. Anal.}, Year = {1990}, Number = {6}, Pages = {1527--1534}, Volume = {27}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gear1988, Title = {{D}ifferential-algebraic equation index transformations}, Author = {Gear, C.W.}, Journal = {{SIAM} J. Sci. Stat. Comp.}, Year = {1988}, Pages = {39--47}, Volume = {9}, Fjournal = {{SIAM} Journal on Scientific and Statistical Computing}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gear1980, Title = {{R}unge-{K}utta starters for multistep methods}, Author = {Gear, C.W.}, Journal = {{ACM} Trans. Math. Softw.}, Year = {1980}, Pages = {263--279}, Volume = {6}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Gear1971, Title = {{N}umerical initial value problems in ordinary differential equations}, Author = {Gear, C.W.}, Publisher = {Prentice Hall}, Year = {1971}, Address = {Englewood Cliffs, NJ}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gear1984, Title = {{S}olving ordinary differential equations with discontinuities}, Author = {Gear, C.W. and Osterby, O.}, Journal = {{ACM} Trans. on Math. Soft.}, Year = {1984}, Number = {1}, Pages = {23--44}, Volume = {10}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gear1974a, Title = {{T}he effect of variable mesh size on the stability of multistep methods}, Author = {Gear, C.W. and Tu, K.W.}, Journal = {{SIAM} J. Numer. Anal.}, Year = {1974}, Pages = {1025--1043}, Volume = {11}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Gear1983, Title = {{S}mooth numerical solutions of ordinary differential equations}, Author = {Gear, C.W. and T. Vu}, Booktitle = {Numerical Treatment of Inverse Problems in Differential and Integral Equations}, Publisher = {Birk\-h\"au\-ser}, Year = {1983}, Address = {Boston}, Editor = {P. Deuflhard and E. Hairer}, Keywords = {DAE ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Geer2014, Title = {On asymptotically optimal confidence regions and tests for high-dimensional models}, Author = {van de Geer, Sara and B\"{u}hlmann, Peter and Ritov, Ya'acov and Dezure, Ruben}, Journal = {Ann. Stats.}, Year = {2014}, Number = {3}, Pages = {1166--1202}, Volume = {42}, Owner = {yhli}, Timestamp = {2014.10.20} } @InProceedings{Geitner1996, Title = {{A}utomatic {C}omputation of {S}parse {J}acobians by {A}pplying the {M}ethod of {N}ewsam and {R}amsdell}, Author = {Geitner, U. and Utke, J. and Griewank, A.}, Booktitle = {Computational Differentiation, Proceedings of the Second International Workshop}, Year = {1996}, Address = {Philadelphia}, Editor = {M. Berz et al. eds.}, Pages = {161--172}, Publisher = {{SIAM}}, Keywords = {DAE ODE automatic differentiation computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Genceli1995, Title = {{D}esign of robust constrained model-predictive controllers with {Volterra} series}, Author = {Genceli, H. and Nikolaou, M.}, Journal = {{AIChE} Journal}, Year = {1995}, Number = {9}, Pages = {2098--2107}, Volume = {41}, Keywords = {optimal control NMPC robust}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Geoffrion1972a, Title = {Generalized Benders' decomposition}, Author = {A.M. Geoffrion}, Journal = {J. Opt. Theory and Apps.}, Year = {1972}, Number = {4}, Pages = {237--260}, Volume = {10}, File = {:Papers/Geoffrion1972.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @InProceedings{Gerdts2008, Title = {A nonsmooth Newton's method for control-state constrained optimal control problems}, Author = {Matthias Gerdts}, Booktitle = {5th Vienna International Conference on Mathematical Modelling/Workshop on Scientific Computing in Electronic Engineering of the 2006 International Conference on Computational Science/Structural Dynamical Systems: Computational Aspects}, Year = {2008}, Number = {4}, Pages = {925 - 936}, Volume = {79}, Doi = {10.1016/j.matcom.2008.02.018}, File = {Gerdts2008.pdf:Gerdts2008.pdf:PDF}, ISSN = {0378-4754}, Journal = {Math. Comp. Simul.}, Keywords = {Optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0378475408001018} } @Book{Gerstner2002, Title = {Spiking neuron models: Single neurons, populations, plasticity}, Author = {Gerstner, W and Kistler, W.}, Publisher = {Cambridge university press}, Year = {2002}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Ghanem1991, Title = {{S}tochastic {F}inite {E}lements}, Author = {R.G. Ghanem and P.D. Spanos}, Publisher = {Springer}, Year = {1991}, Address = {Heidelberg}, Keywords = {PDE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gibson, Title = {Microarray Analysis}, Author = {Greg Gibson}, File = {PLOS - Microarray Analysis.pdf:BIO/PLOS - Microarray Analysis.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.25} } @Article{Giering2003, Title = {{Applying TAF to a Navier-Stokes solver that simulates an Euler flow around an airfoil}}, Author = {R. Giering and T. Kaminski and T. Slawig}, Journal = {Future Gen. Comp. Sys.}, Year = {2003}, Note = {(submitted)}, Abstract = {We give a TAF overview and describe in some detail, how iterative solvers can be handled efficiently. As an application we demonstrate the generation of adjoint, tangent linear, and Hessian code for a CFD solver in an airfoil configuration. We also list a few other large-scale applications and their performance.}, Ad_area = {General, CFD}, Ad_theotech = {Iteration}, Ad_tools = {TAF}, Address = {Amsterdam}, File = {Giering2003ATt.pdf:http\://www.FastOpt.com/papers/Giering2003ATt.pdf:PDF}, Keywords = {PDE}, Owner = {quoctd}, Publisher = {Elsevier}, Timestamp = {2013.08.23} } @Article{Gilbert2010, Title = {Sparse recovery using sparse matrices}, Author = {Gilbert, Anna and Indyk, Piotr}, Journal = {Proc. IEEE}, Year = {2010}, Month = jun, Number = {6}, Pages = {937--947}, Volume = {98}, Owner = {yhli}, Timestamp = {2014.03.25} } @InProceedings{Gilbert2004, Title = {Compressing network graphs}, Author = {Gilbert, Anna C and Levchenko, Kirill}, Booktitle = {Proc. LinkKDD Workshop at AMS Conf. on KDD}, Year = {2004}, File = {gilbert2004compressing.pdf:COMPRESSIVE SENSING/gilbert2004compressing.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @TechReport{Gilbert1993, Title = {State Space and ARMA Models: An Overview of the Equivalence}, Author = {Paul D. Gilbert}, Year = {1993}, File = {Gilbert93StateSpaceArma.pdf:Statistics/Gilbert93StateSpaceArma.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.01} } @TechReport{Gilbert, Title = {ALGORITHMIC LINEAR DIMENSION REDUCTION IN THE l1 NORM FOR SPARSE VECTORS}, Author = {Gilbert, Strauss, Tropp, Vershynin}, File = {GSTV06-Algorithmic-Linear.pdf:Statistical Learning/GSTV06-Algorithmic-Linear.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Giles1979, Title = {Total dual integrality and integer polyhedra}, Author = {Giles, FR and Pulleyblank, William R}, Journal = {Linear algebra and its applications}, Year = {1979}, Pages = {191--196}, Volume = {25}, Owner = {Marwa}, Publisher = {Elsevier}, Timestamp = {2014.12.13} } @Article{Gill2005, Title = {SNOPT: An SQP Algorithm for Large-Scale Constrained Optimization}, Author = {Gill, P. and Murray, W. and Saunders, M.}, Journal = {SIAM Rev.}, Year = {2005}, Number = {1}, Pages = {99-131}, Volume = {47}, Doi = {10.1137/S0036144504446096}, Eprint = {http://epubs.siam.org/doi/pdf/10.1137/S0036144504446096}, File = {Gill2005.pdf:Gill2005.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://epubs.siam.org/doi/abs/10.1137/S0036144504446096} } @Book{Gill1983, Title = {{U}ser's guide for \mbox{SOL/QPSOL}: a {F}ortran package for quadratic programming}, Author = {P.E. Gill and W. Murray and M.A. Saunders and M.H. Wright }, Publisher = {Stanford University}, Year = {1983}, Address = {Systems Optimization Laboratory, Department of Oper. Res.}, Series = {Technical Report}, Volume = { SOL 83-7}, Keywords = {SQP}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Gill1981, Title = {{Practical optimization}}, Author = {Gill, P. E. and Murray, W. and Wright, M. H.}, Publisher = {Academic Press}, Year = {1981}, Address = {London}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Ginchev2012, Title = {Characterization and recognition of d.c. functions}, Author = {I. Ginchev and D. Gintcheva}, Journal = {J. Global Opt.}, Year = {2012}, Pages = {1--15}, File = {:Papers/Ginchev2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Article{Girosi1998, Title = {An Equivalence Between Sparse Approximation and Support Vector Machines}, Author = {Girosi, Federico}, Journal = {Neural Comp.}, Year = {1998}, Number = {6}, Pages = {1455-1480}, Volume = {10}, Doi = {10.1162/089976698300017269}, Eprint = {http://www.mitpressjournals.org/doi/pdf/10.1162/089976698300017269}, File = {girosi1997sparseapprox.pdf:Statistical Learning/girosi1997sparseapprox.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://www.mitpressjournals.org/doi/abs/10.1162/089976698300017269} } @Article{Girosi1995, Title = {Regularization theory and neural networks architectures}, Author = {Girosi, F. and Jones, M. and Poggio, T.}, Journal = {Neural computation}, Year = {1995}, Number = {2}, Pages = {219--269}, Volume = {7}, File = {girosi1995regularization.pdf:Statistical Learning/girosi1995regularization.pdf:PDF}, Owner = {baldassarre}, Publisher = {MIT Press}, Timestamp = {2009.12.16} } @InProceedings{Giselsson2014, Title = {{M}onotonicity and {R}estart in {F}ast {G}radient {M}ethods}, Author = {P. Giselsson and S. Boyd}, Booktitle = {IEEE Conf. Decision and Control}, Year = {2014}, Address = {Los Angeles, USA}, Month = {December}, Organization = {CDC}, Institution = {Stanford University}, Owner = {quoctd}, Timestamp = {2014.10.21}, Type = {Tech. Report} } @Article{Glowinski1975, Title = {Sur l'approximation, par \'el\'ements finis d'ordre un, et la r\'esolution, par p\'enalisation-dualit\'e, d'une classe de probl\`emes de {D}irichlet non lin\'eaires}, Author = {Glowinski, R. and Marrocco, A.}, Journal = {Rev. Fran\c caise Automat. Informat. Recherche Op\'erationnelle, RAIRO Analyse Num\'erique}, Year = {1975}, Number = {R-2}, Pages = {41--76}, Volume = {9}, ISSN = {0399-0516}, Mrclass = {65N35}, Mrnumber = {0388811 (52 \#9645)}, Mrreviewer = {J. R. Cannon}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Gnecco2009, Title = {Estimates of the Approximation Error Using Rademacher Complexity: Learning Vector-Valued Functions}, Author = {Gnecco, G. and Sanguineti, M.}, Journal = {J. Ineq. Apps.}, Year = {2009}, Volume = {2008}, File = {gnecco2009estimates.pdf:Statistical Learning/Vector-valued/gnecco2009estimates.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Hindawi Publishing Corporation}, Timestamp = {2014.11.25} } @Article{Goemans1997, Title = {Semidefinite programming in combinatorial optimization}, Author = {Goemans, M.X.}, Journal = {Math. Program.}, Year = {1997}, Pages = {143--161}, Volume = {79}, Owner = {quoctd}, Timestamp = {2012.07.04} } @PhdThesis{Goh1995, Title = {Robust control synthesis via bilinear matrix inequalities}, Author = {K.C. Goh}, School = {University of Southern California}, Year = {1995}, Address = {Los Angeles, CA}, Type = {PhD Thesis}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Goldberg1998, Title = {Beyond the flow decomposition barrier}, Author = {Goldberg, A. and Rao, S.}, Journal = {J. Amer. Chem. Soc.}, Year = {1998}, Month = sep, Number = {5}, Pages = {783--797}, Volume = {45}, Acmid = {290181}, Address = {New York, NY, USA}, ISSN = {0004-5411}, Issue_date = {Sept. 1998}, Keywords = {combinatorial optimization, maximum flows}, Numpages = {15}, Owner = {jmscarlett}, Publisher = {ACM}, Timestamp = {2014.11.25} } @Article{Goldfarb1983, Title = {{A} numerically stable dual method for solving strictly convex quadratic programs}, Author = {D. Goldfarb and A. Idnani}, Journal = {Math. Prog.}, Year = {1983}, Pages = {1--33}, Volume = {27}, File = {Goldfarb1983.pdf:Goldfarb1983.pdf:PDF}, Keywords = {optimization duality}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Goldfarb2012, Title = {Fast alternating linearization methods of minimization of the sum of two convex functions}, Author = {D. Goldfarb and S. Ma}, Journal = {Math. Program., Ser. A}, Year = {2012}, Pages = {1--34}, Doi = {DOI 10.1007/s10107-012-0530-2}, Owner = {quoctd}, Timestamp = {2013.03.15} } @Article{Goldfarb2011, Title = {Convergence of fixed-point continuation algorithms for matrix rank minimization}, Author = {Goldfarb, D. and Ma, S.}, Journal = {Found. Comp. Math.}, Year = {2011}, Number = {2}, Pages = {183--210}, Volume = {11}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Goldfarb2010, Title = {{F}ast {M}ultiple {S}plitting {A}lgorithms for {C}onvex {O}ptimization}, Author = {D. Goldfarb and S. Ma}, Journal = {SIAM J. Opt.zation}, Year = {2010}, Volume = {(under revision)}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Goldstein2012a, Title = {Fast alternating direction optimization methods}, Author = {Goldstein, T. and ôDonoghue, B. and Setzer, S.}, Journal = {CAM report}, Year = {2012}, Pages = {12--35}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Goldstein2013, Title = {Adaptive {P}rimal-{D}ual {H}ybrid {G}radient {M}ethods for {S}addle {P}oint {P}roblems}, Author = {T. Goldstein and E. Esser and R. Baraniuk}, Journal = {Tech. Report.}, Year = {2013}, Pages = {1--26}, Volume = {http://arxiv.org/pdf/1305.0546v1.pdf}, Owner = {quoctd}, Timestamp = {2014.05.20} } @Article{Goldstein2012, Title = {{F}ast {A}lternating {D}irection {O}ptimization {M}ethods}, Author = {T. Goldstein and B. ODonoghue and S. Setzer}, Journal = {SIAM J. Imaging Sci.}, Year = {2012}, Number = {3}, Pages = {1588--1623}, Volume = {7}, Address = {Los Angeles, USA}, Institution = {Department of Mathematics, University of California}, Owner = {quoctd}, Timestamp = {2012.06.29}, Type = {Tech. Report.} } @Article{Goldstein2009, Title = {The split {B}regman method for $l_1$-pegularized problems}, Author = {T. Goldstein and S. Osher}, Journal = {SIAM J. Imaging Sciences}, Year = {2009}, Number = {2}, Pages = {323--343}, Volume = {2}, File = {:Papers/Goldstein2009.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.23} } @InProceedings{Golovin2010, Title = {Near-optimal {B}ayesian active learning with noisy observations}, Author = {Golovin, Daniel and Krause, Andreas and Ray, Debajyoti}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2010}, Owner = {yhli}, Timestamp = {2014.05.14} } @Book{Golub1996, Title = {{M}atrix {C}omputations}, Author = {Golub, G.H. and Loan, {C.F. van}}, Publisher = {Johns Hopkins University Press}, Year = {1996}, Address = {Baltimore}, Edition = {3rd}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Golub1979, Title = {Generalized cross-validation as a method for choosing a good ridge parameter}, Author = {Golub, Gene H. and Heath, Michael and Wahba, Grace}, Journal = {Technometrics}, Year = {1979}, Month = may, Number = {2}, Pages = {215--223}, Volume = {21}, Owner = {yhli}, Timestamp = {2014.07.09} } @Book{Golub2012, Title = {Matrix computations}, Author = {Golub, Gene H and Van Loan, Charles F}, Publisher = {JHU Press}, Year = {2012}, Volume = {3}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Golub1996a, Title = {Matrix Computations (Johns Hopkins Studies in Mathematical Sciences)}, Author = {Golub, Gene H. and Van Loan, Charles F. }, Publisher = {{The Johns Hopkins University Press}}, Year = {1996}, Month = {October}, Abstract = {{
Revised and updated, the third edition of Golub and Van Loan's classic text in computer science provides essential information about the mathematical background and algorithmic skills required for the production of numerical software. This new edition includes thoroughly revised chapters on matrix multiplication problems and parallel matrix computations, expanded treatment of CS decomposition, an updated overview of floating point arithmetic, a more accurate rendition of the modified Gram-Schmidt process, and new material devoted to GMRES, QMR, and other methods designed to handle the sparse unsymmetric linear system problem.
}}, Citeulike-article-id = {252315}, HowPublished = {Paperback}, ISBN = {0801854148}, Keywords = {compsci, cs, linearalgebra, math, mathematics, matrix}, Owner = {baldazen}, Posted-at = {2008-08-01 17:09:15}, Priority = {2}, Timestamp = {2008.09.24}, Url = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike09-20\&path=ASIN/0801854148} } @Article{Golub1999, Title = {Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.}, Author = {T. R. Golub and D. K. Slonim and P. Tamayo and C. Huard and M. Gaasenbeek and J. P. Mesirov and H. Coller and M. L. Loh and J. R. Downing and M. A. Caligiuri and C. D. Bloomfield and E. S. Lander}, Journal = {Science}, Year = {1999}, Month = {Oct}, Number = {5439}, Pages = {531--537}, Volume = {286}, Abstract = {Although cancer classification has improved over the past 30 years, there has been no general approach for identifying new cancer classes (class discovery) or for assigning tumors to known classes (class prediction). Here, a generic approach to cancer classification based on gene expression monitoring by DNA microarrays is described and applied to human acute leukemias as a test case. A class discovery procedure automatically discovered the distinction between acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL) without previous knowledge of these classes. An automatically derived class predictor was able to determine the class of new leukemia cases. The results demonstrate the feasibility of cancer classification based solely on gene expression monitoring and suggest a general strategy for discovering and predicting cancer classes for other types of cancer, independent of previous biological knowledge.}, File = {golub99molecular.pdf:BIO/golub99molecular.pdf:PDF}, Keywords = {Acute Disease; Antineoplastic Combined Chemotherapy Protocols; Cell Adhesion; Cell Cycle; Gene Expression Profiling; Homeodomain Proteins; Humans; Leukemia, Lymphocytic, Acute; Leukemia, Myeloid; Neoplasm Proteins; Neoplasms; Oligonucleotide Array Sequence Analysis; Oncogenes; Predictive Value of Tests; Reproducibility of Results; Treatment Outcome}, Owner = {luca}, Pii = {7911}, Pmid = {10521349}, Timestamp = {2007.01.25} } @Article{Gondzio2010, Title = {Matrix-free interior point method}, Author = {Gondzio, J.}, Journal = {Comp. Opt. Apps.}, Year = {2010}, Note = {10.1007/s10589-010-9361-3}, Pages = {1-24}, Affiliation = {School of Mathematics and Maxwell Institute for Mathematical Sciences, The University of Edinburgh, Mayfield Road, Edinburgh, EH9 3JZ UK}, File = {Gondzio2010.pdf:Gondzio2010.pdf:PDF}, ISSN = {0926-6003}, Keyword = {Computer Science}, Owner = {quoctd}, Publisher = {Springer Netherlands}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/s10589-010-9361-3} } @InBook{Gondzio2006, Title = {Parallel Processing and Applied Mathematics PPAM 2005}, Author = {J. Gondzio and A. Grothey}, Chapter = {{D}irect {S}olution of {L}inear {S}ystems of {S}ize $109$ {A}rising in {O}ptimization with {I}nterior {P}oint {M}ethods}, Editor = {R. Wyrzykowski and J. Dongarra and N. Meyer and J. Wasniewski.}, Pages = {513--525}, Publisher = {Springer-Verlag}, Year = {2006}, Owner = {quoctd}, Timestamp = {2014.06.21} } @InProceedings{Gong2013, Title = {A General Iterative Shrinkage and Thresholding Algorithm for Non-convex Regularized Optimization Problems}, Author = {Gong, Pinghua and Zhang, Changshui and Lu, Zhaosong and Huang, Jianhua and Ye, Jieping}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2013}, Pages = {37--45}, File = {gong2013general.pdf:gong2013general.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Gonzag1992, Title = {Path-following methods for linear programming}, Author = {C. Gonzaga}, Journal = {SIAM Rev.}, Year = {1992}, Number = {2}, Pages = {167--224}, Volume = {34}, Owner = {quoctd}, Timestamp = {2014.06.21} } @Article{Gonzaga2013, Title = {Fine tuning {N}esterov’s steepest descent algorithm for differentiable convex programming}, Author = {C.C. Gonzaga and E.W. Karas}, Journal = {Math. Program.}, Year = {2013}, Pages = {1--26}, Volume = {xx}, File = {:Papers/Gonzaga2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @InProceedings{Gordon1988, Title = {On {M}ilman's inequality and random subspaces which escape through a mesh in {$\mathbb{R}^n$}}, Author = {Gordon, Y.}, Booktitle = {Geometric Aspects of Functional Analysis: {I}srael Seminar ({GAFA}) 1986--87}, Year = {1988}, Address = {Berlin}, Editor = {Lindenstrauss, Joram and Milman, Vitali D.}, Publisher = {Springer-Verl.}, Owner = {yhli}, Timestamp = {2014.02.11} } @Article{Gorissen2012, Title = {Approximating the Pareto set of multiobjective linear programs via robust optimization}, Author = {B.L. Gorissen and D. Den Hertog}, Journal = {Oper. Res. Lett.}, Year = {2012}, Number = {5}, Pages = {319--324}, Volume = {40}, File = {:Papers/Gorissen2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Gorski2007, Title = {Biconvex sets and optimization with biconvex functions: a survey and extensions}, Author = {Gorski, J. and Pfeuffer, F. and Klamroth, K.}, Journal = {Math. Methods Oper. Res.}, Year = {2007}, Number = {3}, Pages = {373--407}, Volume = {66}, File = {gorski2007biconvex.pdf:Statistical Learning\\gorski2007biconvex.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Gould2010, Title = {A Second Derivative SQP Method: Local Convergence and Practical Issues}, Author = {Gould, N. and Robinson, D.}, Journal = {SIAM J. Opt.}, Year = {2010}, Number = {4}, Pages = {2049-2079}, Volume = {20}, Doi = {10.1137/080744554}, Eprint = {http://epubs.siam.org/doi/pdf/10.1137/080744554}, File = {Gould2010.pdf:Gould2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://epubs.siam.org/doi/abs/10.1137/080744554} } @Article{Goy2012, Title = {Digital confocal microscope}, Author = {Goy, A. and Psaltis, D.}, Journal = {Opt. Exp}, Year = {2012}, Number = {20}, Pages = {22720}, Volume = {20}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Grama2003, Title = {{I}ntroduction to {P}arallel {C}omputing}, Author = {A. Grama and G. Karypis and V. Kumar and A. Gupta}, Publisher = {Addison--Wesley}, Year = {2003}, Edition = {2}, Owner = {quoctd}, Timestamp = {2012.10.11} } @InProceedings{Gramfort2009, Title = {Improving M/EEG source localizationwith an inter-condition sparse prior}, Author = {Gramfort, A. and Kowalski, M.}, Booktitle = {IEEE Int. Symp. Biomed. Imaging}, Year = {2009}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Granek2005, Title = {Explicit equilibrium modeling of transcription-factor binding and gene regulation.}, Author = {Joshua A Granek and Neil D Clarke}, Journal = {Genome Bio.}, Year = {2005}, Number = {10}, Pages = {R87}, Volume = {6}, Abstract = {We have developed a computational model that predicts the probability of transcription factor binding to any site in the genome. GOMER (generalizable occupancy model of expression regulation) calculates binding probabilities on the basis of position weight matrices, and incorporates the effects of cooperativity and competition by explicit calculation of coupled binding equilibria. GOMER can be used to test hypotheses regarding gene regulation that build upon this physically principled prediction of protein-DNA binding.}, Doi = {10.1186/gb-2005-6-10-r87}, File = {Granek05Equilibrium Modelling of TF.pdf:BIO/Granek05Equilibrium Modelling of TF.pdf:PDF}, Keywords = {Binding, Competitive; Chromatin Immunoprecipitation; DNA-Binding Proteins; Forkhead Transcription Factors; Gene Expression Regulation; Genes, cdc; Models, Genetic; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Promoter Regions (Genetics); Protein Binding; Saccharomyces cerevisiae Proteins; Transcription Factors}, Owner = {luca}, Pii = {gb-2005-6-10-r87}, Pmid = {16207358}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1186/gb-2005-6-10-r87} } @InCollection{Grant2007, Title = {Graph Implementations for Nonsmooth Convex Programs}, Author = {M. Grant and S. Boyd}, Booktitle = {Recent Advances in Learning and Control}, Publisher = {Springer}, Year = {2007}, Editor = {V. Blondel and S. Boyd and H. Kimura}, Pages = {95--110}, Series = {Lecture Notes in Control and Information Sciences}, File = {:Papers/Grant2007.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @InCollection{Grant2006, Title = {Disciplined Convex Programming}, Author = {M. Grant and S. Boyd and Y. Ye}, Booktitle = {Global Optimization: From Theory to Implementation}, Publisher = {Springer}, Year = {2006}, Editor = {L. Liberti and N. Maculan}, Pages = {155--210}, Series = {Nonconvex Optimization and its Applications}, File = {:Papers/Grant2006.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Misc{Gray2012, Title = {Parameters for a {J}aguar {X-T}ype}, Author = {A. Gray and M. Zanon and J. Frasch}, HowPublished = {\url{http://www.mathopt.de/RESEARCH/obstacleAvoidance.php}}, Year = {2012}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.mathopt.de/RESEARCH/obstacleAvoidance.php} } @Article{Greenbaum2002, Title = {Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts.}, Author = {Dov Greenbaum and Ronald Jansen and Mark Gerstein}, Journal = {Bioinformatics}, Year = {2002}, Month = {Apr}, Number = {4}, Pages = {585--596}, Volume = {18}, Abstract = {MOTIVATION: Protein abundance is related to mRNA expression through many different cellular processes. Up to now, there have been conflicting results on how correlated the levels of these two quantities are. Given that expression and abundance data are significantly more complex and noisy than the underlying genomic sequence information, it is reasonable to simplify and average them in terms of broad proteomic categories and features (e.g. functions or secondary structures), for understanding their relationship. Furthermore, it will be essential to integrate, within a common framework, the results of many varied experiments by different investigators. This will allow one to survey the characteristics of highly expressed genes and proteins. RESULTS: To this end, we outline a formalism for merging and scaling many different gene expression and protein abundance data sets into a comprehensive reference set, and we develop an approach for analyzing this in terms of broad categories, such as composition, function, structure and localization. As the various experiments are not always done using the same set of genes, sampling bias becomes a central issue, and our formalism is designed to explicitly show this and correct for it. We apply our formalism to the currently available gene expression and protein abundance data for yeast. Overall, we found substantial agreement between gene expression and protein abundance, in terms of the enrichment of structural and functional categories. This agreement, which was considerably greater than the simple correlation between these quantities for individual genes, reflects the way broad categories collect many individual measurements into simple, robust averages. In particular, we found that in comparison to the population of genes in the yeast genome, the cellular populations of transcripts and proteins (weighted by their respective abundances, the transcriptome and what we dub the translatome) were both enriched in: (i) the small amino acids Val, Gly, and Ala; (ii) low molecular weight proteins; (iii) helices and sheets relative to coils; (iv) cytoplasmic proteins relative to nuclear ones; and (v) proteins involved in 'protein synthesis,' 'cell structure,' and 'energy production.' SUPPLEMENTARY INFORMATION: http://genecensus.org/expression/translatome}, File = {Greenbaum02mRNAanalysis.pdf:BIO/Greenbaum02mRNAanalysis.pdf:PDF}, Keywords = {Algorithms; Database Management Systems; Databases, Nucleic Acid; Databases, Protein; Gene Expression; Gene Expression Profiling; Genome; Information Storage and Retrieval; Open Reading Frames; Proteins; Reference Values; Sensitivity and Specificity; Transcription, Genetic; Yeasts}, Owner = {luca}, Pmid = {12016056}, Timestamp = {2007.02.15} } @Article{Gribonval2012, Title = {Compressible distributions for high-dimensional statistics}, Author = {Gribonval, R\'{e}mi and Cevher, Volkan and Davies, Mike E.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2012}, Number = {8}, Pages = {5016--5034}, Volume = {58}, Owner = {yhli}, Timestamp = {2014.06.18} } @Article{Griesse2004, Title = {{E}valuating {G}radients in {O}ptimal {C}ontrol - {C}ontinuous {A}djoints versus {A}utomatic {D}ifferentiation}, Author = {R. Griesse and A. Walther}, Journal = {J. Opt. Theory and Apps.}, Year = {2004}, Number = {1}, Pages = {63--86}, Volume = {122}, Keywords = {optimal control automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Griewank2000, Title = {{E}valuating {D}erivatives, {P}rinciples and {T}echniques of {A}lgorithmic {D}ifferentiation}, Author = {A. Griewank}, Publisher = {{SIAM}}, Year = {2000}, Address = {Philadelphia}, Number = {19}, Series = {Frontiers in Appl. Math.}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Griewank2000a, Title = {{E}valuating {D}erivatives}, Author = {Griewank, A.}, Publisher = {{SIAM}}, Year = {2000}, Address = {Philadelphia}, Series = {Frontiers in applied mathematics}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Griewank1999, Title = {{ADOL-C}: {A} {P}ackage for the {A}utomatic {D}ifferentiation of {A}lgorithms {W}ritten in {C/C++}}, Author = {A. Griewank and D. Juedes and H. Mitev and J. Utke and O. Vogel and A. Walther}, Institution = {Technical University of Dresden, Institute of Scientific Computing and Institute of Geometry}, Year = {1999}, Note = {Updated version of the paper published in {\it {ACM} Trans. Math. Software} 22, 1996, 131--167}, Ad_tools = {ADOL-C}, Key = {Griewank1999AAP}, Keywords = {automatic differentiation}, Owner = {quoctd}, Referred = {[Vogel2001AGT].}, Timestamp = {2013.08.23} } @Article{Griewank2002, Title = {{O}n {C}onstrained {O}ptimization by {A}djoint based quasi-{N}ewton {M}ethods}, Author = {A. Griewank and A. Walther}, Journal = {Opt. Methods and Softw.}, Year = {2002}, Pages = {869 -- 889}, Volume = {17}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Grigorieff1983, Title = {{S}tability of {M}ultistep-{M}ethods on {V}ariable {G}rids}, Author = {Grigorieff, R.D.}, Journal = {Numerische {M}athematik}, Year = {1983}, Pages = {359--377}, Volume = {42}, Keywords = {ODE DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Grigorieff1991, Title = {A note on von Neumann?s trace inequality}, Author = {Grigorieff, Rolf Dieter}, Journal = {Math. Nachr}, Year = {1991}, Pages = {327--328}, Volume = {151}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Grimm2003, Title = {{E}xamples when {M}odel {P}redictive {C}ontrol is {N}onrobust}, Author = {Grimm, G. and Messina, M.J. and Teel, A.R. and Tuna, S.}, Booktitle = {Proc. Amer. Control Conf.}, Year = {2003}, Keywords = {robust NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Unpublished{Grimm2003a, Title = {{M}odel {P}redictive {C}ontrol: for want of a local control {L}yapunov function, all is not lost}, Author = {Grimm, G. and Messina, M.J. and Teel, A.R. and Tuna, S.}, Note = {submitted}, Year = {2003}, Keywords = {robust NMPC optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Groetsch1984, Title = {The theory of Tikhonov regularization for Fredholm equations of the first kind}, Author = {Groetsch, C. W.}, Publisher = {Pitman (Advanced Publishing Program)}, Year = {1984}, Address = {Boston, MA}, Series = {Research Notes in Mathematics}, Volume = {105}, ISBN = {0-273-08642-1}, Owner = {jmscarlett}, Pages = {iv+104}, Timestamp = {2014.11.25} } @Article{Grosenick2011, Title = {A family of interpretable multivariate models for regression and classification of whole-brain fMRI data}, Author = {Grosenick, L. and Klingenberg, B. and Knutson, B. and Taylor, J.~E.}, Journal = {ArXiv e-prints}, Year = {2011}, Month = oct, Adsnote = {Provided by the SAO/NASA Astrophysics Data System}, Adsurl = {http://adsabs.harvard.edu/abs/2011arXiv1110.4139G}, Archiveprefix = {arXiv}, Eprint = {1110.4139}, File = {grosenick2011family.pdf:NEURO\\grosenick2011family.pdf:PDF}, Keywords = {Statistics - Applications}, Owner = {jmscarlett}, Primaryclass = {stat.AP}, Timestamp = {2014.11.25} } @Article{Gross2011, Title = {Recovering low-rank matrices from few coefficients in any basis}, Author = {Gross, David}, Journal = {IEEE Trans. Inf. Theory}, Year = {2011}, Month = mar, Number = {3}, Pages = {1548--1566}, Volume = {57}, Owner = {yhli}, Timestamp = {2014.06.10} } @Article{Grossmann2002, Title = {{R}eview of {N}onlinear {M}ixed-{I}nteger and {D}isjunctive {P}rogramming {T}echniques}, Author = {Grossmann, I.E.}, Journal = {Optimization and Engineering}, Year = {2002}, Pages = {227--252}, Volume = {3}, File = {Grossmann2002.pdf:Grossmann2002.pdf:PDF}, Keywords = {MINLP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Grossmann1983, Title = {{O}ptimization {S}trategies for {F}lexible {C}hemical {P}rocesses.}, Author = {I.E. Grossmann and K.P. Halemane and R.E. Swaney}, Journal = {Comp. Chem. Eng.}, Year = {1983}, Pages = {439--462}, Volume = {7}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Grossmann1978, Title = {{O}ptimum design of chemical plants with uncertain parameters}, Author = {Grossmann, I.E. and Sargent, R.W.H.}, Journal = {{AIChE} Journal}, Year = {1978}, Pages = {1021--1028}, Volume = {24}, Keywords = {optimization chemistry robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Grunewalder2012, Title = {Modelling transition dynamics in mdps with rkhs embeddings}, Author = {Grunewalder, S. and Lever, G. and Baldassarre, L. and Pontil, M. and Gretton, A.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2012}, File = {grunewalder2012modelling.pdf:grunewalder2012modelling.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Gu1996, Title = {Efficient algorithms for computing a strong rank-revealing QR factorization}, Author = {Gu, Ming and Eisenstat, Stanley C}, Journal = {SIAM J. Sci. Comp.}, Year = {1996}, Number = {4}, Pages = {848--869}, Volume = {17}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Book{Guddat1990, Title = {{P}arametric {O}ptimization: {S}ingularities, {P}athfollowing and {J}umps}, Author = {J. Guddat and F. Guerra Vasquez and H.T. Jongen}, Publisher = {Teubner}, Year = {1990}, Address = {Stuttgart}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Guermeur2007, Title = {VC Theory of Large Margin Multi-Category Classifiers}, Author = {Guermeur, Yann}, Journal = {J. Mach. Learn. Res.}, Year = {2007}, Pages = {2551-2594}, Volume = {8}, File = {guermeur07vctheory.pdf:Statistical Learning/Multiclass/guermeur07vctheory.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.06.09} } @Article{GuerraVazquez2008, Title = {{G}eneralized semi-infinite programming: {A} tutorial}, Author = {Guerra V\'{a}zquez,, F. and R\"{u}ckmann,, J. -J. and Stein,, O. and Still,, G.}, Journal = {J. Comp. App. Math.}, Year = {2008}, Number = {2}, Pages = {394--419}, Volume = {217}, Address = {Amsterdam, The Netherlands, The Netherlands}, Doi = {http://dx.doi.org/10.1016/j.cam.2007.02.012}, ISSN = {0377-0427}, Owner = {quoctd}, Publisher = {Elsevier Science Publishers B. V.}, Timestamp = {2013.08.23} } @InProceedings{Guh2000, Title = {{N}ested {G}raph {D}issection and {A}pproximation {A}lgorithms}, Author = {S. Guha}, Booktitle = {IEEE Symp. Found. Comp. Sci.}, Year = {2000}, Pages = {126--135}, Keywords = {integer programming}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {citeseer.ist.psu.edu/guha00nested.html} } @InCollection{Guigue2005, Title = {Kernel basis pursuit}, Author = {Guigue, V. and Rakotomamonjy, A. and Canu, S.}, Booktitle = {Machine Learning: ECML 2005}, Publisher = {Springer}, Year = {2005}, Pages = {146--157}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Guinney, Title = {Estimating variable structure and dependence in Multi-task learning via gradients}, Author = {Guinney, J. and Wu, Q. and Mukherjee, S.}, File = {:Statistical Learning/Multitask/guwumu08mtlgradients.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.09.19} } @InCollection{Gunter2006, Title = {Computing the Solution Path for the Regularized Support Vector Regression}, Author = {Gunter, L. and Zhu, J.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Publisher = {MIT Press}, Year = {2006}, Address = {Cambridge, MA}, Editor = {Y. Weiss and B. Sch\"{o}lkopf and J. Platt}, Pages = {483--490}, File = {gunter2006computing.pdf:SVM\\gunter2006computing.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Guo2005, Title = {Mutual information and minimum mean-square error in {G}aussian channels}, Author = {Guo, Dongning and Shamai (Shitz), Shlomo and Verd{\'{u}}, Sergio}, Journal = {IEEE Trans. Inf. Theory}, Year = {2005}, Month = apr, Number = {4}, Pages = {1261--1282}, Volume = {51}, Owner = {yhli}, Timestamp = {2014.06.18} } @Article{Guo2007, Title = {Optimally sparse multidimensional representation using shearlets}, Author = {Guo, Kanghui and Labate, Demetrio}, Journal = {SIAM journal on mathematical analysis}, Year = {2007}, Number = {1}, Pages = {298--318}, Volume = {39}, File = {guo2007optimally.pdf:guo2007optimally.pdf:PDF}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Guo2012, Title = {Stability Analysis for Parametric Mathematical Programs with Geometric Constraints and Its Applications}, Author = {L. Guo and G.-H. Lin and J.J. Ye}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {3}, Pages = {1151--1176}, Volume = {22}, File = {:Papers/Guo2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Guo2014, Title = {A New Detail-Preserving Regularization Scheme}, Author = {Guo, Weihong and Qin, Jing and Yin, Wotao}, Journal = {SIAM Journal on Imaging Sciences}, Year = {2014}, Number = {2}, Pages = {1309--1334}, Volume = {7}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Conference{Gupta2010, Title = {Regularized Maximum Likelihood for Intrinsic Dimension Estimatio}, Author = {Gupta, M.D. and Huang, S. T.}, Booktitle = {Conference on Uncertainty in Artificial Intelligence (UAI)}, Year = {2010}, File = {gupta2010regularized.pdf:Statistical Learning/EBB/gupta2010regularized.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.10.01} } @Article{Guyon2003, Title = {An introduction to variable and feature selection}, Author = {Isabelle Guyon and Andr\'{e} Elisseeff}, Journal = {J. Mach. Learn. Res.}, Year = {2003}, Pages = {1157--1182}, Volume = {3}, Address = {Cambridge, MA, USA}, File = {guyon2003introduction.pdf:Statistical Learning\\SPARSITY\\guyon2003introduction.pdf:PDF}, ISSN = {1533-7928}, Keywords = {feature selection, variable selection, statistical learning}, Owner = {jmscarlett}, Publisher = {MIT Press}, Timestamp = {2014.11.25} } @Article{Haar1910, Title = {{Z}ur {T}heorie der orthogonalen {F}unktionen-{S}ysteme}, Author = {A. Haar}, Journal = {Math. Ann.}, Year = {1910}, Pages = {331--371}, Volume = {69}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Hachez2003, Title = {Optimization problems over nonnegative polynomials with interpolation constraints}, Author = {Y. Hachez and Y. Nesterov}, Institution = {CORE/UCL}, Year = {2003}, Number = {2003/34}, Type = {CORE Discussion Paper}, File = {:Papers/Hachez2003.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Hadamard1902, Title = {{Sur les problemes aux derivees partielles et leur signification physique}}, Author = {Hadamard, J.}, Journal = {Princeton University Bulletin}, Year = {1902}, Number = {1}, Pages = {49--52}, Volume = {13}, Owner = {baldassarre}, Timestamp = {2009.11.09} } @Article{Hadid2004, Title = {An Experimental Investigation about the Integration of Facial Dynamics in Video-Based Face Recognition}, Author = {Abdenour Hadid and Matti Pietikäinen}, Journal = {Elec. Let. Comp. Vis. and Image Anal.}, Year = {2004}, Pages = {1-13}, Volume = {5}, File = {HadidPietikainen04IntegrationFacialDynamics.pdf:VC/HadidPietikainen04IntegrationFacialDynamics.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.01} } @Book{Hairer1996, Title = {{S}olving {O}rdinary {D}ifferential {E}quations {II} -- {S}tiff and {D}ifferential-{A}lgebraic {P}roblems}, Author = {Hairer, E. and N{\o}rsett, S.P. and Wanner, G.}, Publisher = {Springer}, Year = {1996}, Address = {Berlin}, Edition = {2nd}, Series = {Springer Series in Computational Mathematics}, Keywords = {ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Hale2008, Title = {Fixed-point continuation for $\ell_1$-minimization: methodology and convergence}, Author = {E.T. Hale and W. Yin and Y. Zhang}, Journal = {SIAM J. Opt.}, Year = {2008}, Number = {3}, Pages = {1107--1130}, Volume = {19}, Owner = {quoctd}, Timestamp = {2013.01.30} } @TechReport{Hale2007, Title = {A Fixed-Point Continuation Method for l1-Regularized Minimization with Applications to Compressed Sensing}, Author = {Hale, E.T. and Yin, Y. and Zhang, Y.}, Institution = {Deparment of Computational and Applied Mathematics, Rice University}, Year = {2007}, Number = {TR07-07}, Owner = {baldassarre}, Timestamp = {2011.11.23} } @InProceedings{Halemane1981, Title = {{O}ptimal process design under uncertainty}, Author = {K.P. Halemane and I.E.Grossmann}, Booktitle = {74-th Annual Meeting of the {AIChE}}, Year = {1981}, Address = {New Orleans}, Keywords = {optimal control robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Halko2011, Title = {Finding structure with randomness: Probabilistic algorithms for constructing approximate matrix decompositions}, Author = {Halko, Nathan and Martinsson, Per-Gunnar and Tropp, Joel A}, Journal = {SIAM Rev.}, Year = {2011}, Number = {2}, Pages = {217--288}, Volume = {53}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Hamdi2005, Title = {Two-level primal-dual proximal decomposition technique to solve large-scale optimization problems}, Author = {A. Hamdi}, Journal = {App. Math. Comp.}, Year = {2005}, Pages = {921--938}, Volume = {160}, Owner = {quoctd}, Timestamp = {2011.11.21} } @Article{Hamdi2005a, Title = {Decomposition for structured convex programs with smooth multiplier methods}, Author = {A. Hamdi}, Journal = {App. Math. Opt.}, Year = {2005}, Pages = {218--241}, Volume = {169}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Hamdi2011, Title = {Decomposition methods based on augmented {L}agrangians: A survey}, Author = {A. Hamdi and S.K. Mishra}, Journal = {Topics in Nonconvex Optimization: Theory and Application}, Year = {2011}, Pages = {175--203}, File = {:Papers/Hamdi2005.pdf:PDF}, Owner = {quoctd}, Publisher = {Springer-Verlag}, Timestamp = {2011.11.21} } @Article{Han2013, Title = {An {ADM}-based splitting method for separable convex programming}, Author = {D. Han and X. Yuan and W. Zhang and X. Cai}, Journal = {Comp. Opt. Apps.}, Year = {2013}, Pages = {1--23}, Volume = {xx}, File = {:Papers/Han2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Han1976, Title = {{S}uperlinearly convergent variable-metric algorithms for general nonlinear programming problems}, Author = {Han, S.P.}, Journal = {Math. Prog.}, Year = {1976}, Pages = {263--282}, Volume = {11}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Han1988, Title = {A {P}arallel {A}lgorithm for a {C}lass of {C}onvex {P}rograms}, Author = {S.P. Han and G. Lou}, Journal = {SIAM J. Control Opt.}, Year = {1988}, Pages = {345--355}, Volume = {26}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Book{Han2003, Title = {Information-Spectrum Methods in Information Theory}, Author = {Han, T. S.}, Publisher = {Springer}, Year = {2003}, ISBN = {9783540435815}, Lccn = {02032398}, Owner = {jmscarlett} } @Article{Hand2006, Title = {Classifier technology and the illusion of progress}, Author = {Hand, D.J.}, Journal = {Statistical Science}, Year = {2006}, Number = {1}, Pages = {1--14}, Volume = {21}, File = {hand2006classifier.pdf:Statistical Learning/hand2006classifier.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Institute of Mathematical Statistics}, Timestamp = {2014.11.25} } @Book{Handel2014, Title = {Probability in High Dimension}, Author = {van Handel, Ramon}, Year = {2014}, Month = jun, Owner = {yhli}, Timestamp = {2014.08.20}, Url = {http://www.princeton.edu/~rvan/} } @Article{Hang2013, Title = {Fast learning from $\alpha$-mixing observations}, Author = {Hang, H and Steinwart, I.}, Year = {2013}, Month = dec, Note = {accepted by J. Multivar. Anal{.}}, Owner = {yhli}, Timestamp = {2014.03.13} } @Article{Hans-Jakob2005, Title = {Convex risk measures for portfolio optimization and concepts of flexibility}, Author = {L. Hans-Jakob and D. J\"{o}rg}, Journal = {Math. Program.}, Year = {2005}, Number = {2-3}, Pages = {541--559}, Volume = {104}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Hardoon2007, Title = {Unsupervised analysis of fMRI data using kernel canonical correlation}, Author = {Hardoon, D.R. and Mourao-Miranda, J. and Brammer, M. and Shawe-Taylor, J.}, Journal = {NeuroImage}, Year = {2007}, Number = {4}, Pages = {1250--1259}, Volume = {37}, File = {hardoon2007unsupervised.pdf:NEURO\\hardoon2007unsupervised.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @TechReport{Hardoon2003, Title = {Canonical correlation analysis. An overview with application to learning methods}, Author = {David R. Hardoon and Sandor Szedmak and John Shawe-Taylor}, Institution = {Royal Holloway University of London}, Year = {2003}, Number = {CSD-TR-03-02}, Type = {Technical Report}, File = {Hardoon03Canonical.pdf:Statistical Learning/Hardoon03Canonical.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.02.04}, Url = {citeseer.ist.psu.edu/583962.html} } @Article{HARE2012, Title = {INEXACTNESS IN BUNDLE METHODS FOR LOCALLY LIPSCHITZ FUNCTIONS}, Author = {W. HARE and C. SAGASTIZ\'{A}BAL AND M. SOLODOV}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/HARE2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Hariharan2008, Title = {Decentralized resource allocation in dynamic networks of agents}, Author = {L. Hariharan and F.D. Pucci}, Journal = {SIAM J. Opt.zation}, Year = {2008}, Number = {2}, Pages = {911--940}, Volume = {19}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Harmany2012, Title = {This is {SPIRAL-TAP}: {S}parse {P}oisson {I}ntensity {R}econstruction {A}lgorithms - {T}heory and {P}ractice,}, Author = {Z.T. Harmany and R.F. Marcia and R. M. Willett}, Journal = {IEEE Trans. Image Proc.}, Year = {2012}, Number = {3}, Pages = {1084--1096}, Volume = {21}, Owner = {quoctd}, Timestamp = {2013.03.15} } @InProceedings{Harris1988, Title = {A Combined Corner and Edge Detector}, Author = {Harris, C. and Stephens, M.}, Booktitle = {Proc. Alvey Vision Conf.}, Year = {1988}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{Hartigan1979, Title = {A K-Means Clustering Algorithm}, Author = {Hartigan, J. A. and Wong, M. A.}, Journal = {App. Statistics}, Year = {1979}, Volume = {28}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{Hartl1995, Title = {{A} survey of the {M}aximum {P}rinciples for optimal control problems with state constraints}, Author = { Hartl, R.F. and Sethi, S.P. and Vickson, R.G.}, Journal = {{SIAM} Review}, Year = {1995}, Pages = {181--218}, Volume = {37}, File = {Hartl1995.pdf:Hartl1995.pdf:PDF}, Keywords = {optimal control optimality conditions indirect methods}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Hassibi1999, Title = {A path following method for solving BMI problems in control}, Author = {A. Hassibi and J. How and S. Boyd}, Booktitle = {Proc. Amer. Control Conf.}, Year = {1999}, Pages = {1385--1389}, Volume = {2}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Hastie1995, Title = {Penalized discriminant analysis}, Author = {Hastie, T. and Buja, A. and Tibshirani, R.}, Journal = {Ann. Stats..}, Year = {1995}, Number = {1}, Pages = {73--102}, Volume = {23}, File = {hastie1995penalized.pdf:Statistical Learning\\hastie1995penalized.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Institute of Mathematical Statistics}, Timestamp = {2014.11.25} } @Article{Hastie2004, Title = {The Entire Regularization Path for the Support Vector Machine}, Author = {Hastie, T. and Saharon, R. and Tibshirani, R. and Zhu, J.}, Journal = {J. Mach. Learn. Res.}, Year = {2004}, Pages = {1391--1415}, Volume = {5}, File = {hastie2004entire.pdf:SVM\\hastie2004entire.pdf:PDF}, Keywords = {coefficient path,regularization,support vector machines}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Hastie2009, Title = {The Elements of Statistical Learning}, Author = {Hastie, Trevor and Tibshirani, Robert and Friedman, Jerome}, Publisher = {Springer}, Year = {2009}, Address = {New York}, Owner = {yhli}, Timestamp = {2014.07.11} } @InCollection{Haufe2009, Title = {Estimating vector fields using sparse basis field expansions}, Author = {Haufe, Stefan and Nikulin, Vadim V. and Ziehe, Andreas and M\"{u}ller, Klaus-Robert and Nolte, Guido}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2009}, Editor = {D. Koller and D. Schuurmans and Y. Bengio and L. Bottou}, Pages = {617--624}, File = {haufe2009estimating.pdf:Statistical Learning/Vector-valued/haufe2009estimating.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Haverbeke2009, Title = {{A} structure exploiting interior-point method for moving horizon estimation}, Author = {N. Haverbeke and M. Diehl and B. De Moor}, Booktitle = {Proc. Conf. Decision and Control}, Year = {2009}, Address = {Shanghai, China}, Doi = {10.1109/CDC.2009.5400804}, File = {HaverbekeCDC2009.pdf:HaverbekeCDC2009.pdf:PDF}, Keywords = {Moving Horizon Estimation optec}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5400804} } @InProceedings{Haverbeke2008, Title = {{N}onlinear model predictive control with moving horizon state and disturbance estimation - {A}pplication to the normalization of blood glucose in the critically ill}, Author = {N. Haverbeke and T. Van Herpe and M. Diehl and G. Van den Berghe and B. De Moor}, Booktitle = {IFAC World Congress 2008 (IFAC08) (Seoul, Korea)}, Year = {2008}, Doi = {10.3182/20080706-5-KR-1001.01531}, File = {HaverbekeIFAC2008.pdf:HaverbekeIFAC2008.pdf:PDF}, Keywords = {Model Predictive Control, Moving Horizon Estimation}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.ifac-papersonline.net/Detailed/37228.html} } @Article{He2011, Title = {Alternating directions based contraction method for generally separable linearly constrained convex programming problems}, Author = {B.S. He and M. Tao and M.H. Xu and X.M. Yuan}, Journal = {Optimization}, Year = {2011}, Volume = {(to appear)}, File = {:Papers/He2011.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{He2011a, Title = {Solving large-scale least squares covariance matrix problems by alternating direction methods}, Author = {B.S. He and M.H. Xu and X.M. Yuan}, Journal = {SIAM J. Matrix Anal. App.}, Year = {2011}, Pages = {136--152}, Volume = {32}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{He2000, Title = {Alternating directions method with self-adaptive penalty parameters for monotone variational inequalities}, Author = {B.S. He and H. Yang and S.L. Wang}, Journal = {J. Opt. Theory and Apps.}, Year = {2000}, Pages = {349--368}, Volume = {106}, Owner = {quoctd}, Timestamp = {2012.05.10} } @Article{He, Title = {On convergence rate of the Douglas-Rachford operator splitting method}, Author = {B. He and X. Yuan}, Journal = {Tech. Report. (submitted to Math. Program.)}, Owner = {quoctd}, Timestamp = {2014.07.21} } @Article{He2012, Title = {On the ${O}(1/n)$ convergence rate of the {D}ouglas-{R}achford alternating direction method}, Author = {He, B.S. and Yuan, X.M.}, Journal = {SIAM J. Numer. Anal.}, Year = {2012}, Pages = {700--709}, Volume = {50}, Owner = {quoctd}, Timestamp = {2012.06.20} } @Unpublished{He2012c, Title = {On non-ergodic convergence rate of {D}ouglas-{R}achford alternating direction method of multipliers}, Author = {B. He and X. Yuan}, Note = {(submitted for publication)}, Year = {2012}, Comment = {submitted for publication}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{He2012d, Title = {Convergence analysis of primal-dual algorithms for saddle-point problem: from contraction perspective}, Author = {B. He and X. Yuan}, Journal = {SIAM J. Imaging Sciences}, Year = {2012}, Pages = {119--149}, Volume = {5}, Owner = {quoctd}, Timestamp = {2013.07.03} } @Article{He2012e, Title = {Forward–backward-based descent methods for composite variational inequalities}, Author = {B. He and X. Yuan}, Journal = {Opt. Methods and Softw.}, Year = {2012}, Pages = {1--19}, Volume = {xx}, File = {:Papers/He2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{He2009, Title = {Exploiting structure in wavelet-based Bayesian compressive sensing}, Author = {He, L. and Carin, L.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2009}, Number = {9}, Pages = {3488--3497}, Volume = {57}, File = {he2009exploiting.pdf:he2009exploiting.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @TechReport{Heckerm1996, Title = {A Tutorial on Learning With Bayesian Networks}, Author = {Heckerman}, Institution = {Microsoft}, Year = {1996}, File = {A Tutorial on Learning With Bayesian Networks.pdf:Statistical Learning/A Tutorial on Learning With Bayesian Networks.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Heckerman1995, Title = {Learning Bayesian networks: The combination of knowledge and statistical data}, Author = {Heckerman, D. and Geiger, D. and Chickering, D.}, Journal = {Mach. Learn.}, Year = {1995}, Number = {3}, Pages = {197--243}, Volume = {20}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Hedlund2002, Title = {{C}onvex {D}ynamic {P}rogramming for {H}ybrid {S}ystems}, Author = {Hedlund, Sven and Rantzer, Anders }, Journal = {IEEE Trans. Aut. Control}, Year = {2002}, Month = sep, Number = {9}, Pages = {1536--1540}, Volume = {47}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Hegde2009, Title = {Compressive sensing recovery of spike trains using a structured sparsity model}, Author = {Hegde, C. and Duarte, M. and Cevher, V.}, Booktitle = {Sig. Proc. with Adapative Sparse Struct. Rep. (SPARS)}, Year = {2009}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @TechReport{Hein2004, Title = {Kernels, Associated Structures and Generalizations}, Author = {Hein, M. and Bousquet, O.}, Institution = {Max Planck Institute for Biological Cybernetics}, Year = {2004}, Month = {July}, Number = {127}, File = {hein04kernels.pdf:Statistical Learning/hein04kernels.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.06.27} } @Article{Heinkenschloss2001, Title = {{A}nalysis of {I}nexact {T}rust-{R}egion {SQP} {A}lgorithms}, Author = {M. Heinkenschloss and L.N. Vicente}, Journal = {{SIAM} J. Opt.}, Year = {2001}, Number = {2}, Pages = {283--302}, Volume = {12}, Keywords = {SQP optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Helbig1998, Title = {{M}odel {P}redictive {C}ontrol for {O}n-line {O}ptimization of {S}emi-batch {R}eactors}, Author = {Helbig, A. and Abel, O. and Marquardt, W.}, Booktitle = accc, Year = {1998}, Address = {Philadelphia}, Pages = {1695--1699 }, Keywords = {optimal control NMPC chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Henrion2005, Title = {Solving polynomial static output feedback problems with PENBMI}, Author = {D. Henrion and J. Loefberg and M. Kocvara and M. Stingl}, Booktitle = {Proc. IEEE Conf. Decision Control and Europ. Control Conf.}, Year = {2005}, Address = {Sevilla, Spain}, Owner = {quoctd}, Timestamp = {2012.04.08} } @InCollection{Henrion2001, Title = {{O}ptimal {C}ontrol of a {C}ontinuous {D}estillation {P}rocess {U}nder {P}robabilistic {C}onstraints}, Author = {R. Henrion and P. Li and A. Moeller and M. Wendt and G. Wozny}, Booktitle = {Online {O}ptimization of {L}arge {S}cale Systems: {S}tate of the {A}rt}, Publisher = {Springer}, Year = {2001}, Editor = {M. Gr\"otschel and S.O. Krumke and J. Rambau}, Pages = {499--520}, File = {Henrion2001.pdf:Henrion2001.pdf:PDF}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Henson1998, Title = {{N}onlinear {M}odel {P}redictive {C}ontrol: {C}urrent {S}tatus and {F}uture {D}irections}, Author = {Henson, M.A.}, Journal = {Comp. Chem. Eng.}, Year = {1998}, Pages = {187--202}, Volume = {23}, File = {Henson1998.pdf:Henson1998.pdf:PDF}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Conference{Herbster2005, Title = {Online learning over graphs}, Author = {Herbster, M. and Pontil, M. and Wainer, L.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2005}, Organization = {ACM}, Pages = {305--312}, File = {herbster2005online.pdf:Statistical Learning\\herbster2005online.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Herpe2007, Title = {{G}lycemia {P}rediction in {C}ritically {I}ll {P}atients {U}sing an {A}daptive {M}odeling {A}pproach}, Author = {T. Van Herpe and M. Espinoza and N. Haverbeke and B. De Moor and G. Van den Berghe}, Journal = {J. Diabetes Sci. Tech.}, Year = {2007}, Month = May, Pages = {348--356}, Volume = {1}, Issue = {3}, Keywords = {optec}, Owner = {quoctd}, Timestamp = {2013.08.23} } @PhdThesis{Hertog1992, Title = {Interior point approach to linear, quadratic and convex programming: {A}lgorithms and complexity}, Author = {D.D. Hertog}, School = {Delf University}, Year = {1992}, Address = {Netherland}, Type = {PhD Thesis}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Book{Hestenes1952a, Title = {Methods of conjugate gradients for solving linear systems}, Author = {Hestenes, M. and Stiefel, E.}, Publisher = {NBS}, Year = {1952}, Volume = {49}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Hestenes1969, Title = {Multiplier and gradient methods}, Author = {Hestenes, M. R.}, Journal = {J. Opt. Theory and Apps.}, Year = {1969}, Note = {10.1007/BF00927673}, Pages = {303-320}, Volume = {4}, ISSN = {0022-3239}, Issue = {5}, Keyword = {Mathematics and Statistics}, Owner = {quoctd}, Publisher = {Springer Netherlands}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/BF00927673} } @PhdThesis{Heusinger2009, Title = {Numerical Methods for the Solution of the Generalized {N}ash Equilibrium Problem}, Author = {A. Von Heusinger}, School = {Universit\"{a}t W\"{u}rzburg, Institut f\"{u}r Mathematik}, Year = {2009}, Type = {PhD Thesis}, File = {:Theses/PhDThesisvonHeusinger2009.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Article{Hicks1971, Title = {{A}pproximation methods for optimal control systems}, Author = {Hicks, G.A. and W.H. Ray}, Journal = {Can. J. Chem. Engng.}, Year = {1971}, Pages = {522--528}, Volume = {49}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Hindmarsh2005, Title = {{SUNDIALS}: Suite of Nonlinear and Differential/Algebraic Equation Solvers}, Author = {Hindmarsh, A.C. and Brown, P.N. and Grant, K.E. and Lee, S.L. and Serban, R. and Shumaker, D.E. and Woodward,C.S.}, Journal = {{ACM} Trans. Math. Software}, Year = {2005}, Pages = {363--396}, Volume = {31}, File = {:/home/janderss/common/optec_bib/pdf/Hindmarsh2005.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Hindmarsh1980, Title = {{LSODE} and {LSODI}, two new initial value ordinary differential equation solvers}, Author = {Hindmarsh, A. C.}, Journal = {{ACM}-SIGNUM Newsletter}, Year = {1980}, Pages = {10--11}, Volume = {15}, Keywords = {ODE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @PhdThesis{Hinsberger1998, Title = {{E}in direktes {M}ehrzielverfahren zur {L}\"osung von {O}p\-ti\-mal\-steue\-rungs\-pro\-ble\-men mit grossen, differential--algebraischen {G}leichungssystemen und {A}nwendungen aus der {V}erfahrenstechnik}, Author = {Hinsberger, H.}, School = {Technische Universit\"at Clausthal}, Year = {1998}, Keywords = {optimal control DAE collocation multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Hinsberger1996, Title = {{O}ptimal temperature control of semibatch polymerization reactors}, Author = {Hinsberger, H. and S. Miesbach and H.J. Pesch}, Booktitle = {Scientific Computing in Chemical Engineering}, Year = {1996}, Address = {Heidelberg}, Editor = {F. Keil and W. Mackens and H. Voss and J. Werther}, Publisher = {Springer}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{HiriartUrruty2010, Title = {A Variational Approach to Copositive Matrices}, Author = {J.-B. Hiriart-Urruty and A. Seeger}, Journal = {SIAM Rev.}, Year = {2010}, Number = {4}, Pages = {593--629}, Volume = {52}, File = {:Papers/Hiriart-Urruty2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Book{Hjorth1994, Title = {Computer intensive statistical methods: Validation model selection and bootstrap}, Author = {Hjorth, J.S.U.}, Publisher = {Chapman \& Hall/CRC}, Year = {1994}, Owner = {baldassarre}, Timestamp = {2010.02.22} } @Article{Hoeffding1963, Title = {Probability inequalities for sums of bounded random variables}, Author = {Hoeffding, W.}, Journal = {J. Amer. Stat. Assoc.}, Year = {1963}, Number = {301}, Pages = {13--30}, Volume = {58}, File = {hoeffding1963probability.pdf:Statistics/hoeffding1963probability.pdf:PDF}, Owner = {jmscarlett}, Publisher = {JSTOR}, Timestamp = {2014.11.25} } @Article{Hoeffding1948, Title = {A class of statistics with asymptotically normal distribution}, Author = {Hoeffding, Wassily}, Journal = {Ann. Math. Stat.}, Year = {1948}, Number = {3}, Pages = {293--325}, Volume = {19}, Owner = {yhli}, Timestamp = {2014.03.13} } @Article{Hoerl1970, Title = {Ridge regression: biased estimation for nonorthogonal problems}, Author = {Hoerl, A. E. and Kennard, R. W.}, Journal = {Technometrics}, Year = {1970}, Pages = {27-51}, Volume = {8}, Owner = {baldazen}, Timestamp = {2008.06.27} } @InBook{Hol2005, Title = {Positive Polynomials in Control}, Author = {C.W.J. Hol and C.W. Scherer}, Chapter = {A sum-of-squares approach to fixed-order {H}-infinity synthesis}, Editor = {D. Henrion and A. Garulli}, Pages = {45--71}, Publisher = {Springer-Verlag}, Year = {2005}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Book{Holl1966, Title = {{U}nsteady {S}tate {P}rocesses with {A}ppliacation in {M}ulticomponent {D}istillation}, Author = {Charles D. Holland}, Publisher = {Prentice {H}all}, Year = {1966}, Address = {Englewood Cliffs, NJ}, Keywords = {chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Holmberg2001, Title = {Experiments with primal-dual decomposition and subgradient methods for the uncapacitated facility location problem}, Author = {K. Holmberg}, Journal = {Optimization}, Year = {2001}, Number = {5--6}, Pages = {495--516}, Volume = {49}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Holmberg2006, Title = {Mean value cross decomposition for nonlinear convex problem}, Author = {K. Holmberg and K.C. Kiwiel}, Journal = {Opt. Methods and Softw.}, Year = {2006}, Number = {3}, Pages = {401--417}, Volume = {21}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Holtz2012, Title = {Structured Matrices, Continued Fractions, and Root Localization of Polynomials}, Author = {O. Holtz and M. Tyaglov}, Journal = {SIAM Rev.}, Year = {2012}, Number = {3}, Pages = {421--509}, Volume = {54}, File = {:Papers/Holtz2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Hong1992, Title = {Rank-revealing factorizations and the singular value decomposition}, Author = {Hong, Yoo Pyo and Pan, C-T}, Journal = {Math. Comp.}, Year = {1992}, Number = {197}, Pages = {213--232}, Volume = {58}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Honorio2014, Title = {A unified framework for consistency of regularized loss minimizers}, Author = {Honorio, Jean and Jaakkola, Tommi}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2014}, Owner = {yhli}, Timestamp = {2014.08.13} } @Article{Hooker1965, Title = {{T}he {D}ynamical {A}ttitude {E}quations for an n-{B}ody {S}atellite}, Author = {William W. Hooker and G. Margulies}, Journal = {The Journal of the Astronautical Science}, Year = {1965}, Pages = {123--128}, Volume = {VII, No. 4}, File = {HookerMargulies1965.pdf:HookerMargulies1965.pdf:PDF}, Owner = {qtrandin}, Timestamp = {2009.08.21} } @Article{Hoory2006, Title = {Expander graphs and their applications}, Author = {Hoory, Shlomo and Linial, Nathan and Wigderson, Avi}, Journal = {Bull. Amer. Math. Soc}, Year = {2006}, Month = oct, Number = {4}, Pages = {439--561}, Volume = {43}, Owner = {yhli}, Timestamp = {2014.03.26} } @Book{Horn1985, Title = {Matrix Analysis}, Author = {Horn, Roger A. and Johnson, Charles R.}, Publisher = {Cambridge Univ. Press}, Year = {1985}, Address = {Cambridge, UK}, Owner = {yhli}, Timestamp = {2014.06.04} } @Book{Hosmer2005, Title = {{A}pplied {L}ogistic {R}egression}, Author = {D. W. Hosmer and S. Lemeshow}, Publisher = {John Wiley and Sons}, Year = {2005}, Owner = {quoctd}, Timestamp = {2014.10.03} } @Misc{Hossain2002, Title = {{G}raph coloring in the estimation of mathematical derivatives}, Author = {Hossain, S. and Steihaug, T.}, Year = {2002}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {citeseer.ist.psu.edu/hossain02graph.html} } @Misc{Hossain1997, Title = {{C}omputing a sparse {J}acobian matrix by rows and columns}, Author = {Hossain, S. and Steihaug, T.}, Year = {1997}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Hotelling1936, Title = {Relations between two sets of variates}, Author = {Hotelling, Harold}, Journal = {Biometrika}, Year = {1936}, Number = {3-4}, Pages = {321-377}, Volume = {28}, Doi = {10.1093/biomet/28.3-4.321}, Eprint = {http://biomet.oxfordjournals.org/cgi/reprint/28/3-4/321.pdf}, Owner = {baldazen}, Timestamp = {2008.06.26}, Url = {http://biomet.oxfordjournals.org} } @Article{Hsia2012, Title = {On {RIC} bounds of Compressed Sensing Matrices for Approximating Sparse Solutions Using $l_q$ Quasi Norms}, Author = {Y. Hsia and R.L. Sheu}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Hsia2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @InProceedings{Hsieh2013, Title = {BIG \& QUIC: Sparse inverse covariance estimation for a million variables}, Author = {Hsieh, C. and Sustik, M. and Dhillon, I. and Ravikumar, P. and Poldrack, R.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2013}, Pages = {3165--3173}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Hsieh2011, Title = {Sparse inverse covariance matrix estimation using quadratic approximation}, Author = {C. J. Hsieh and M.A. Sustik and I.S. Dhillon and P. Ravikumar}, Journal = {Advances in Neutral Information Processing Systems}, Year = {2011}, Pages = {1--18}, Volume = {24}, Owner = {quoctd}, Timestamp = {2012.11.23} } @Article{Hsu2002, Title = {A comparison of methods for multiclass support vector machines}, Author = {Chih-Wei Hsu and Chih-Jen Lin}, Journal = {IEEE Trans. Neur. Nets.}, Year = {2002}, Month = {March}, Number = {2}, Pages = {415--425}, Volume = {13}, Doi = {10.1109/72.991427}, File = {HsuLin02MulticlassSVM.pdf:Statistical Learning/Multiclass/HsuLin02MulticlassSVM.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.27} } @Article{Huang2010, Title = {The benefit of group sparsity}, Author = {Huang, J. and Zhang, T.}, Journal = {Ann. Stats..}, Year = {2010}, Number = {4}, Pages = {1978--2004}, Volume = {38}, Owner = {jmscarlett}, Publisher = {Institute of Mathematical Statistics}, Timestamp = {2014.11.25} } @Article{Huang2011, Title = {Learning with structured sparsity}, Author = {Huang, J. and Zhang, T. and Metaxas, D.}, Journal = {J. Mach. Learn. Res.}, Year = {2011}, Pages = {3371--3412}, Volume = {12}, File = {huang2011learning.pdf:huang2011learning.pdf:PDF}, Owner = {jmscarlett}, Publisher = {JMLR. org}, Timestamp = {2014.11.25} } @InProceedings{Huang2009, Title = {Learning with structured sparsity}, Author = {Huang, J. and Zhang, T. and Metaxas, D.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2009}, Organization = {ACM}, Pages = {417--424}, File = {:/Users/baldassarre/Dropbox/Scienza/Statistical Learning/SPARSITY/huang2009learning.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Huang2012a, Title = {Singing-voice separation from monaural recordings using robust principal component analysis}, Author = {Huang, Po-Sen and Chen, Scott Deeann and Smaragdis, Paris and Hasegawa-Johnson, Mark}, Booktitle = {IEEE Int. Conf. Acoustics, Speech, and Sig. Proc. (ICASSP)}, Year = {2012}, Organization = {IEEE}, Pages = {57--60}, File = {huang2012singing.pdf:huang2012singing.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Huber2009, Title = {Robust Statistics}, Author = {Huber, Peter J. and Ronchetti, Elvezio M.}, Publisher = {John Wiley \& Sons}, Year = {2009}, Address = {Hoboken, NJ}, Owner = {yhli}, Timestamp = {2014.06.18} } @PhdThesis{Huo1999, Title = {Sparse image representation via combined transforms}, Author = {Huo, X.}, School = {stanford university}, Year = {1999}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Ibaraki1988, Title = {{R}esource {A}llocation {P}roblems: {A}lgorithmic {A}pproaches, {F}oundations of {C}omputing}, Author = {T. Ibaraki and N. Katoh}, Publisher = {The MIT Press}, Year = {1988}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Ierapetritou1996, Title = {{A}n {O}ptimization {A}pproach for {P}rocess {E}ngineering {P}roblems {U}nder {U}ncertainty}, Author = {M.G. Ierapetritou and J. Acevedo and E.N. Pistikopoulos}, Journal = {Comp. Chem. Eng.}, Year = {1996}, Pages = {703--709}, Volume = {20}, Keywords = {optimal control robust chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Indyk2011, Title = {K-median clustering, model-based compressive sensing, and sparse recovery for earth mover distance}, Author = {Indyk, P. and Price, E.}, Booktitle = {Proc. ACM Symp. on Theory of Computing}, Year = {2011}, Organization = {ACM}, Pages = {627--636}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InCollection{Indyk2013, Title = {On model-based RIP-1 matrices}, Author = {Indyk, P. and Razenshteyn, I.}, Booktitle = {Automata, Languages, and Programming}, Publisher = {Springer}, Year = {2013}, Pages = {564--575}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Instruments2004, Title = {{D}erive}, Author = {Texas Instruments}, Publisher = {Texas Instruments, Inc.}, Year = {2004}, Address = {Housten, Texas}, Edition = {6.0}, Keywords = {automatic differentiation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Isaacs1965, Title = {Differential Games}, Author = {R. Isaacs}, Publisher = {John Wiley and Sons}, Year = {1965}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Isidori1995, Title = {{N}onlinear {C}ontrol {S}ystems}, Author = {Isidori, A.}, Publisher = {Springer-Verlag}, Year = {1995}, Address = {Berlin}, Edition = {3.}, Key = {isidorif}, Keywords = {optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Istratescu1981, Title = {Fixed Point Theory}, Author = {Istr\v{a}\c{t}escu, Vasile I.}, Publisher = {D. Reidel}, Year = {1981}, Address = {Dordrecht}, Owner = {yhli}, Timestamp = {2014.04.23} } @Article{Iusem1997, Title = {A variant of {K}orpelevich’s method for variational inequalities with a new search strategy}, Author = {A.N. Iusem and B.F. Svaiter}, Journal = {Optimization}, Year = {1997}, Number = {4}, Pages = {309--321}, Volume = {42}, File = {:Papers/Iusem1997.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Book{Ivanov1976, Title = {The theory of approximate methods and their application to the numerical solution of singular integral equations}, Author = {Ivanov, V.V. and Anderssen, RS}, Publisher = {Springer}, Year = {1976}, Owner = {baldassarre}, Timestamp = {2010.02.08} } @Article{Izenman1975, Title = {Reduced-rank regression for the multivariate linear model}, Author = {Izenman, A. J.}, Journal = {J. Multiv. Anal.}, Year = {1975}, Pages = {248-264}, Volume = {5}, Owner = {baldazen}, Timestamp = {2008.06.27} } @Article{Izhikevich2003, Title = {Simple model of spiking neurons}, Author = {Izhikevich, E. and others}, Journal = {IEEE Trans. Neur. Net.}, Year = {2003}, Number = {6}, Pages = {1569--1572}, Volume = {14}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Jaehnich1998, Title = {{L}ineare {A}lgebra}, Author = {Klaus J\"ahnich}, Publisher = {Springer}, Year = {1998}, Address = {Heidelberg}, Edition = {4}, Note = {Ein Buch mit vielen graphischen Veranschaulichungen, empfehlen wir zur Nacharbeitung des Stoffes in Linearer Algebra.}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Juenger2004, Title = {{C}ombinatorial {O}ptimization and {I}nteger {P}rogramming}, Author = {M. J\"unger and G. Reinelt}, Booktitle = {Encyclopedia of Life Support Systems {EOLSS}, 6.5: {O}ptimization and Oper. Res.}, Publisher = {{EOLSS} {P}ublishers}, Year = {2004}, Editor = {U. Derigs}, Pages = {321--327}, Keywords = {integer programming}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Jacob2008, Title = {Clustered Multi-Task Learning: A Convex Formulation}, Author = {Jacob,L. and Bach, F. and Vert, J.P.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2008}, File = {:Statistical Learning/Multitask/jacob08clusteredmtl.pdf:PDF}, Owner = {baldazen}, Timestamp = {2009.01.28} } @InProceedings{Jacob2009, Title = {Group Lasso with overlap and graph Lasso}, Author = {Jacob, L. and Obozinski, G. and Vert, J.P.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2009}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Jadbabaie2005, Title = {On the stability of receding horizon control with a general terminal cost}, Author = {A. Jadbabaie and J. Hauser}, Journal = {IEEE Trans. Aut. Control}, Year = {2005}, Number = {5}, Pages = {674--678}, Owner = {quoctd}, Timestamp = {2012.04.08}, Volumne = {50} } @Article{Jaddu2002, Title = {Direct solution of nonlinear optimal control problems using quasi-linearization and Chebyshev polynomials}, Author = {H. Jaddu}, Journal = {J. Franklin Inst.}, Year = {2002}, Pages = {479--498}, Volume = {339}, File = {:Papers/Jaddu2002.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.07} } @Article{Jaeger1997, Title = {Global convergence of inexact reduced SQP methods}, Author = {Jaeger, H. and Sachs, E.W.}, Journal = {Opt. Methods and Softw.}, Year = {1997}, Number = {2}, Pages = {83-110}, Volume = {7}, Doi = {10.1080/10556789708805646}, Eprint = {http://www.tandfonline.com/doi/pdf/10.1080/10556789708805646}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.tandfonline.com/doi/abs/10.1080/10556789708805646} } @Article{Jafarpour2009, Title = {Efficient and robust compressed sensing using optimized expander graphs}, Author = {Jafarpour, S. and Xu, W. and Hassibi, B. and Calderbank, R.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2009}, Number = {9}, Pages = {4299--4308}, Volume = {55}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Jaganathan2013, Title = {Sparse Phase Retrieval: Uniqueness Guarantees and Recovery Algorithms}, Author = {Jaganathan, K. and Oymak, S. and Hassibi, B.}, Journal = {arXiv preprint arXiv:1311.2745}, Year = {2013}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Jaggi2013, Title = {{R}evisiting {F}rank-{W}olfe: {P}rojection-{F}ree {S}parse {C}onvex {O}ptimization}, Author = {M. Jaggi}, Journal = {JMLR W\&CP}, Year = {2013}, Number = {1}, Pages = {427--435}, Volume = {28}, Owner = {quoctd}, Timestamp = {2014.07.02} } @InProceedings{Jain2010, Title = {Guaranteed rank minimization via singular value projection}, Author = {Jain, Prateek, Meka, Raghu and Dhillon, Inderjit}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2010}, Owner = {yhli}, Timestamp = {2014.07.18} } @Article{Jakovetic2011, Title = {Fast distributed gradient methods}, Author = {Jakoveti\'{c}, D., Xavier, J. and Moura, J.M.F.}, Journal = {http://arxiv.org/abs/1112.2972}, Year = {2011}, Pages = {1--32}, Owner = {quoctd}, Timestamp = {2012.06.07} } @InProceedings{Jalali2011, Title = {On learning discrete graphical models using group-sparse regularization}, Author = {Jalali, A. and Ravikumar, P. and Vasuki, V. and Sanghavi, S.}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2011}, Pages = {378--387}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Jalali2012a, Title = {Clustering using max-norm constrained optimization}, Author = {A. Jalali and N. Srebro}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2012}, Pages = {1--17}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Unpublished{Jalali2012, Title = {From compression to compressed sensing}, Author = {Shirin Jalali and Arian Maleki}, Note = {http://arxiv.org/abs/1212.4210}, Month = {Dec.}, Year = {2012}, Owner = {Jono}, Timestamp = {2014.08.30} } @Article{Jalali2014, Title = {Minimum Complexity Pursuit for Universal Compressed Sensing}, Author = {Jalali, S. and Maleki, A and Baraniuk, R.G.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2014}, Month = {April}, Number = {4}, Pages = {2253-2268}, Volume = {60}, ISSN = {0018-9448}, Owner = {jmscarlett} } @Unpublished{Jalali2014a, Title = {Universal Compressed Sensing of {M}arkov Sources}, Author = {Shirin Jalali and H. Vincent Poor}, Note = {http://arxiv.org/abs/1406.7807}, Month = {June}, Year = {2014}, Owner = {Jono}, Timestamp = {2014.08.30} } @InProceedings{James1961, Title = {Estimation with quadratic loss}, Author = {James, W. and Stein, Charles}, Booktitle = {Proc. Berkeley Symp. Math. Stats. Prob.}, Year = {1961}, Pages = {361--379}, Publisher = {Univ. Calif. Press}, Volume = {1}, Owner = {yhli}, Timestamp = {2014.07.07} } @Electronic{Jarre2003a, Title = {On an approximation of the Hessian of the Lagrangian}, Author = {F. Jarre}, HowPublished = {Optimization Online}, Url = {http://www.optimization$-$online.org/DB\_HTML/2003/12/800.html}, Year = {2003}, File = {:Papers/Jarre2003.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.07} } @InProceedings{Jegelka2011, Title = {On fast approximate submodular minimization.}, Author = {Jegelka, S. and Lin, H. and Bilmes, J.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2011}, Pages = {460--468}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Jenatton2011c, Title = {Structured Variable Selection with Sparsity-Inducing Norms}, Author = {Jenatton, R. and Audibert, J.-Y. and Bach, F.}, Journal = {J. Mach. Learn. Res.}, Year = {2011}, Pages = {2777-2824}, Volume = {12}, File = {jenatton2011structured.pdf:Statistical Learning\\SPARSITY\\jenatton2011structured.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Jenatton2011, Title = {Multi-scale Mining of fMRI Data with Hierarchical Structured Sparsity}, Author = {Jenatton, R. and Gramfort, A. and Michel, V. and Obozinski, G. and Bach, F. and Thirion, B.}, Booktitle = {Pattern Recognition in NeuroImaging (PRNI)}, Year = {2011}, Doi = {10.1109/PRNI.2011.15}, File = {jenatton2011multiscale.pdf:NEURO\\jenatton2011multiscale.pdf:PDF}, Keywords = {cognitive information;fMRI data;feature agglomeration;functional magnetic resonance imaging data;hierarchical structured sparsity;inverse inference;multiscale mining;univariate feature selection;biomedical MRI;data mining;medical image processing;}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Jenatton2011a, Title = {Proximal Methods for Hierarchical Sparse Coding}, Author = {Jenatton, R. and Mairal, J. and Obozinski, G. and Bach, F.}, Journal = {J. Mach. Learn. Res.}, Year = {2011}, Pages = {2297-2334}, Volume = {12}, File = {jenatton2011proximal.pdf:Statistical Learning/SPARSITY/jenatton2011proximal.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2012.05.14} } @Misc{Jensen2004, Title = {A Bayesian Clustering Model for Transcription Factor Binding Motifs}, Author = {Shane T. Jensen and Jun S. Liu}, HowPublished = {Poster}, Year = {2004}, File = {JensenLiu2004.pdf:BIO/JensenLiu2004.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.13} } @Article{Jensen2012, Title = {Implementation of an optimal first-order method for strongly convex total variation regularization}, Author = {Jensen, T.L. and J{\o}rgensen, J.H. and Hansen, P.C. and Jensen, S.H.}, Journal = {BIT Numer. Math.}, Year = {2012}, Pages = {329-356}, Volume = {52}, Doi = {10.1007/s10543-011-0359-8}, File = {Jensen2012.pdf:Jensen2012.pdf:PDF}, ISSN = {0006-3835}, Issue = {2}, Keywords = {Optimal first-order optimization methods; Strong convexity; Total variation regularization; Tomography; 65K10; 65R32}, Language = {English}, Owner = {quoctd}, Publisher = {Springer Netherlands}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/s10543-011-0359-8} } @Article{Ji2009a, Title = {Multi-label multiple kernel learning}, Author = {Ji, S. and Sun, L. and Jin, R. and Ye, J.}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2009}, Volume = {21}, File = {ji2009multi.pdf:Statistical Learning\\Kernel Learning\\ji2009multi.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Citeseer}, Timestamp = {2014.11.25} } @InProceedings{Ji2009, Title = {An accelerated gradient method for trace norm minimization}, Author = {Ji, S. and Ye, J.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2009}, Organization = {ACM}, Pages = {457--464}, File = {ji2009accelerated.pdf:Optimization/ji2009accelerated.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Jiang2012, Title = {An Inexact accelerated proximal gradient method for large scale linearly constrained convex {SDP}}, Author = {K. Jiang and D. Sun and K.C. Toh}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {3}, Pages = {1042--1064}, Volume = {22}, File = {:Papers/Jiang2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Jiang2014, Title = {Minimax optimal rates for {P}oisson inverse problems with physical constraints}, Author = {Jiang, Xin and Raskutti, Garvesh and Willett, Rebecca}, Year = {2014}, Note = {arXiv:1403.6532v1 [math.ST]}, Owner = {yhli}, Timestamp = {2014.08.18} } @Article{Jin2011, Title = {Limits on Support Recovery of Sparse Signals via Multiple-Access Communication Techniques}, Author = {Yuzhe Jin and Young-Han Kim and Rao, B.D.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2011}, Month = {Dec}, Number = {12}, Pages = {7877-7892}, Volume = {57}, ISSN = {0018-9448}, Owner = {jmscarlett} } @PhdThesis{Johansson2008, Title = {{O}n {D}istributed {O}ptimization in {N}etworked {S}ystems}, Author = {B. Johansson}, School = {Automatic Control Laboratory, School of Electrical Engineering, Royal Institute of Technology (KTH)}, Year = {2008}, Address = {SE-100 44 Stockholm, Sweden}, Type = {PhD Thesis}, Owner = {quoctd}, Timestamp = {2012.10.11} } @InProceedings{Johansson2009, Title = {Distributed non-smooth resource allocation over a network}, Author = {B. Johansson and M. Johansson}, Booktitle = {Proc. IEEE conference on Decision and Control}, Year = {2009}, Pages = {1678--1683}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Johansson2009a, Title = {A randomized incremental subgradient method for distributed optimization in networked systems}, Author = {Johansson, B. and Rabi, M. and Johansson, M.}, Journal = {SIAM J. Opt.zation}, Year = {2009}, Number = {3}, Pages = {1157--1170}, Volume = {20}, Owner = {quoctd}, Timestamp = {2012.08.17} } @Book{Johnson2005, Title = {Univariate Discrete Distributions}, Author = {Johnson, Norman L. and Kemp, Adrienne W. and Kotz, Samuel}, Publisher = {Wiley-Intersci.}, Year = {2005}, Address = {Hoboken, NJ}, Edition = {third}, Owner = {yhli}, Timestamp = {2014.08.22} } @Article{Johnstone2001, Title = {On the distribution of the largest eigenvalue in principal components analysis}, Author = {Johnstone, I.}, Journal = {Annals of statistics}, Year = {2001}, Pages = {295--327}, Owner = {jmscarlett}, Publisher = {JSTOR}, Timestamp = {2014.11.25} } @InProceedings{Jojic2011, Title = {Convex envelopes of complexity controlling penalties: the case against premature envelopment}, Author = {Jojic, Vladimir and Saria, Suchi and Koller, Daphne}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2011}, Pages = {399--406}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Misc{Jones2001, Title = {{SciPy}: Open source scientific tools for {Python}}, Author = {Eric Jones and Travis Oliphant and Pearu Peterson and others}, Year = {2001--}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.scipy.org/} } @Article{Jordan2013, Title = {On statistics, computation and scalability}, Author = {Jordan, Michael I.}, Journal = {Bernoulli}, Year = {2013}, Number = {4}, Pages = {1378--1390}, Volume = {19}, Owner = {yhli}, Timestamp = {2014.07.02} } @Article{Jordan1999, Title = {An Introduction to Variational Methods for Graphical Models}, Author = {Michael I. Jordan and Zoubin Ghahramani and Tommi Jaakkola and Lawrence K. Saul}, Journal = {Mach. Learn.}, Year = {1999}, Pages = {183-233}, Volume = {37}, File = {:Statistical Learning/jordan98introduction.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26}, Url = {citeseer.ist.psu.edu/jordan98introduction.html} } @Article{Jordan1935, Title = {On inner products in linear, metric spaces}, Author = {Jordan, P. and v. Neumann, J.}, Journal = {Ann. Math.}, Year = {1935}, Month = jul, Number = {3}, Pages = {719--723}, Volume = {36}, Owner = {yhli}, Timestamp = {2014.04.14} } @Article{Joseph1961, Title = {{O}n {L}inear {C}ontrol {T}heory}, Author = {P.D. Joseph and J.T. Tou}, Journal = {AIEE Trans.}, Year = {1961}, Number = {18}, Volume = {80}, Key = {Part II}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Journee2010, Title = {Generalized power method for sparse principal component analysis}, Author = {M. Journ\'{e}e and Y. Nesterov and P. Richt\'{a}rik and R. Sepulchre}, Journal = {J. Mach. Learn. Res.}, Year = {2010}, Pages = {517--553}, Volume = {11}, File = {:Papers/Journee2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Juang1991, Title = {Hidden Markov models for speech recognition}, Author = {Juang, Biing-Hwang and Rabiner, Laurence R}, Journal = {Technometrics}, Year = {1991}, Number = {3}, Pages = {251--272}, Volume = {33}, File = {juang1991hmm.pdf:juang1991hmm.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Taylor \& Francis}, Timestamp = {2014.11.25} } @Article{Juditsky2013, Title = {Randomized first order algorithms with applications to $l_1$-minimization}, Author = {A. Juditsky and F.K. Karzan and A. Nemirovski}, Journal = {Math. Program.}, Year = {2013}, Pages = {1--42}, Volume = {xx}, File = {:Papers/Juditsky2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Juditsky2000, Title = {Functional aggregation for nonparametric regression}, Author = {Juditsky, Anatoli and Nemirovski, Arkadii}, Journal = {Ann. Stats.}, Year = {2000}, Number = {3}, Pages = {681--712}, Volume = {28}, Owner = {yhli}, Timestamp = {2014.11.05} } @Article{Juditsky2014, Title = {Deterministic and stochastic primal-dual subgradient algorithms for uniformly convex minimization}, Author = {Juditsky, Anatoli and Nesterov, Yuri}, Journal = {Stoch. Syst.}, Year = {2014}, Number = {0}, Pages = {1--37}, Volume = {4}, Owner = {yhli}, Timestamp = {2014.08.19} } @Article{Juditsky2010, Title = {Primal-dual subgradient methods for minimizing uniformly convex function}, Author = {A. Juditsky and Y. Nesterov}, Journal = {CORE Discussion Paper}, Year = {2010}, Pages = {1--29}, Volume = {August}, File = {:Papers/Juditsky2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @InProceedings{Julier1995, Title = {{N}avigation and {P}arameter {E}stimation of {H}igh {S}peed {R}oad {V}ehicles}, Author = {S.J. Julier and H.F. Durrant-Whyte}, Booktitle = {Robotics and Automation Conference}, Year = {1995}, Address = {Nagoya}, Pages = {101--105}, Keywords = {parameter estimation mechanics}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Julier2004, Title = {{U}nscented filtering and nonlinear estimation}, Author = {Julier, S.J. and Uhlmann, J.K.}, Journal = {Proc. IEEE}, Year = {2004}, Number = {3}, Pages = { 401- 422}, Volume = {92}, Keywords = {parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Julier2002, Title = {{T}he scaled unscented transformation}, Author = {Julier, S.J. and Uhlmann, J.K.}, Booktitle = {Proc. Amer. Control Conf.}, Year = {2002}, Pages = {4555--4559}, Keywords = {parameter estimation mechanics}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Julier2000, Title = {{A} new method for the nonlinear transformation of means and covariances in filters and estimators}, Author = {S.J. Julier and J.K. Uhlmann and H.F. Durrant-Whyte}, Journal = {IEEE Trans. Aut. Control}, Year = {2000}, Pages = {477--482}, Volume = {45}, File = {:Julier2000.pdf:PDF}, Keywords = {parameter estimation mechanics, unscented Kalman filter}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Junkins1986, Title = {Optimal spacecraft rotational maneuvers}, Author = {J.L. Junkins and J.D. Turner}, Editor = {Amsterdam}, Publisher = {Elsevier}, Year = {1986}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Jurman2008, Title = {Algebraic stability indicators for ranked lists in molecular profiling}, Author = {Giuseppe Jurman and Stefano Merler and Annalisa Barla and Silvano Paoli and Antonio Galea and Cesare Furlanello}, Journal = {Bioinformatics}, Year = {2008}, Month = {Jan}, Number = {2}, Pages = {258--264}, Volume = {24}, Abstract = {MOTIVATION: We propose a method for studying the stability of biomarker lists obtained from functional genomics studies. It is common to adopt resampling methods to tune and evaluate marker-based diagnostic and prognostic systems in order to prevent selection bias. Such caution promotes honest estimation of class prediction, but leads to alternative sets of solutions. In microarray studies, the difference in lists may be bewildering, also due to the presence of modules of functionally related genes. Methods for assessing stability understand the dependency of the markers on the data or on the predictor's type and help selecting solutions. RESULTS: A computational framework for comparing sets of ranked biomarker lists is presented. Notions and algorithms are based on concepts from permutation group theory. We introduce several algebraic indicators and metric methods for symmetric groups, including the Canberra distance, a weighted version of Spearman's footrule. We also consider distances between partial lists and an aggregation of sets of lists into an optimal list based on voting theory (Borda count). The stability indicators are applied in practical situations to several synthetic, cancer microarray and proteomics datasets. The addressed issues are predictive classification, presence of modules, comparison of alternative biomarker lists, outlier removal, control of selection bias by randomization techniques and enrichment analysis. AVAILABILITY: Supplementary Material and software are available at the address http://biodcv.fbk.eu/listspy.html}, Doi = {10.1093/bioinformatics/btm550}, File = {jurman08algebraic.pdf:BIO/jurman08algebraic.pdf:PDF}, Keywords = {Algorithms; Data Interpretation, Statistical; Gene Expression Profiling; Humans; Neoplasm Proteins; Neoplasms; Oligonucleotide Array Sequence Analysis; Reproducibility of Results; Sensitivity and Specificity; Tumor Markers, Biological}, Owner = {baldazen}, Pii = {btm550}, Pmid = {18024475}, Timestamp = {2008.02.27}, Url = {http://dx.doi.org/10.1093/bioinformatics/btm550} } @PhdThesis{Koerkel2002, Title = {{N}umerische {M}ethoden f\"ur {O}ptimale {V}ersuchsplanungsprobleme bei nichtlinearen {DAE}-{M}odellen}, Author = {K\"orkel, S.}, School = {Universit\"at {H}eidelberg}, Year = {2002}, Address = {Heidelberg}, File = {Koerkel2002.pdf:Koerkel2002.pdf:PDF}, Keywords = {agbock experimental design DAE}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.koerkel.de} } @InProceedings{Koerkel2004a, Title = {{N}umerical {M}ethods for {N}onlinear {E}xperimental {D}esign}, Author = {S. K\"orkel and E. Kostina}, Booktitle = {Modeling, Sim. and Opt. of Complex Processes}, Year = {2004}, Address = {Hanoi, Vietnam}, Editor = {H. G. Bock and E. Kostina and H. X. Phu and R. Rannacher}, Pages = {255--272}, Publisher = {Springer}, File = {Koerkel2004a.pdf:Koerkel2004a.pdf:PDF}, Journal = {Opt. Methods and Softw.}, Keywords = {agbock experimental design robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Koerkel2004, Title = {{N}umerical methods for optimal control problems in design of robust optimal experiments for nonlinear dynamic processes}, Author = {S. K\"orkel and E. Kostina and H.G. Bock and J.P. Schl\"oder}, Journal = {Opt. Methods and Softw.}, Year = {2004}, Pages = {327--338}, Volume = {19}, File = {Koerkel2004.pdf:Koerkel2004.pdf:PDF}, Keywords = {agbock experimental design robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Kuehl2003, Title = {{E}valuation of {A}spentech's {APOLLO} {N}onlinear {M}odel {P}redictive {C}ontroller}, Author = {P. K\"uhl}, Institution = {BASF}, Year = {2003}, Keywords = {agbock NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @MastersThesis{Kuehn2002, Title = {{M}odellierung und {O}ptimierung einer {A}minos\"aurefermentation}, Author = {K\"uhn, A.}, School = {Universit\"at Freiberg}, Year = {2002}, Keywords = {chemistry optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InBook{Kak2001, Title = {Principles of Computerized Tomographic Imaging}, Author = {Kak, Avinash C. and Slaney, Malcolm}, Chapter = {4}, Pages = {113--175}, Publisher = {SIAM}, Year = {2001}, Address = {Philadelphia, PA}, Owner = {yhli}, Timestamp = {2014.08.14} } @Article{Kakade2008, Title = {On the complexity of linear prediction: Risk bounds, margin bounds, and regularization}, Author = {Kakade, S.M. and Sridharan, K. and Tewari, A.}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2008}, Pages = {793--800}, Volume = {22}, File = {kakade2008complexity.pdf:Statistical Learning/kakade2008complexity.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Kakade2010, Title = {Learning exponential families in high-dimensions: Strong convexity and sparsity}, Author = {Kakade, Sham M. and Shamir, Ohad and Sridharan, Karthik and Tewari, Ambuj}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2010}, Owner = {yhli}, Timestamp = {2014.08.13} } @Article{Kallrath1993, Title = {{L}east {S}quares {P}arameter {E}stimation in {C}haotic {D}ifferential {E}quations}, Author = {Kallrath, J. and H.G. Bock and J.P. Schl\"oder}, Journal = {Celestial Mechanics and Dynamical Astronomy}, Year = {1993}, Pages = {353--371}, Volume = {56}, Keywords = {agbock parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kalm1963, Title = {{L}yapunov functions for the problem of {L}ur'e in automatic control}, Author = {R.E. Kalman}, Journal = {Proc. Nat. Acad. Sci.}, Year = {1963}, Pages = {pp. 201-205}, Volume = {49}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kalm1960a, Title = {{C}ontrol system analysis and design by the second method of {L}yapunov}, Author = {R.E. Kalman}, Journal = {Trans. {ASME} Ser. D.J. Basic Engrg.}, Year = {1960}, Pages = {pp. 371-400}, Volume = {82}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kaminski2008, Title = {Quadratic programming on graphs without long odd cycles}, Author = {Kami{\'n}ski, Marcin}, Year = {2008}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Kannan2012, Title = {Distributed computation of equilibria in monotone {N}ash games via Iterative regularization techniques}, Author = {A. Kannan and U.V. Shanbhag}, Journal = {SIAM J. Opt.}, Year = {2012}, Number = {4}, Pages = {1177--1205}, Volume = {22}, File = {:Papers/Kannan2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.24} } @Article{Kanzow2005, Title = {Successive linearization methods for nonlinear semidefinite programs}, Author = {C. Kanzow and C. Nagel and H. Kato and M. Fukushima}, Journal = {Comp. Opt. Apps.}, Year = {2005}, Pages = {251--273}, Volume = {31}, Owner = {quoctd}, Timestamp = {2012.04.08} } @TechReport{Kar2001, Title = {Optimization based rate control for multipath sessions}, Author = {K. Kar and S. Sarkar and L. Tassiulas}, Institution = {Inst. Syst. Res., Univ. Maryland}, Year = {2001}, Address = {College Park, MD}, Number = {ISR TR 2001-1}, Type = {Tech. Rep.}, Owner = {quoctd}, Timestamp = {2014.10.10} } @Article{Karas2008, Title = {Optimal steepest descent algorithms for unconstrained convex problems: fine tuning {N}esterov's method}, Author = {C.C. Gonzaga E.W. Karas}, Journal = {Optimization Online}, Year = {2008}, Pages = {1--21}, Volume = {July}, File = {:Papers/Karas2008.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.25} } @Article{Karas2009, Title = {A bundle-filter method for nonsmooth convex constrained optimization}, Author = {E. Karas and A. Ribeiro and C. Sagastizabal and M. Solodov}, Journal = {Math. Program.}, Year = {2009}, Pages = {297--320}, Volume = {116}, Owner = {quoctd}, Timestamp = {2014.04.08} } @Book{Karp1972, Title = {Reducibility among combinatorial problems}, Author = {Karp, Richard M}, Publisher = {Springer}, Year = {1972}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @MastersThesis{Karush1939, Title = {{M}inima of functions of several variables with inequalities as side conditions}, Author = {Karush, W.}, School = {Department of Mathematics, University of Chicago}, Year = {1939}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kato2007, Title = {An {SQP}-type algorithm for nonlinear second-order cone programs}, Author = {H. Kato and M. Fukushima}, Journal = {Optimization Letters}, Year = {2007}, Pages = {129--144}, Volume = {1}, Owner = {quoctd}, Timestamp = {2012.04.08} } @Article{Kato2008, Title = {Multi-task learning via conic programming}, Author = {Kato, T. and Kashima, H. and Sugiyama, M. and Asai, K.}, Journal = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2008}, Pages = {737--744}, Volume = {20}, File = {kato2008multitask.pdf:Statistical Learning/Multitask/kato2008multitask.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Citeseer}, Timestamp = {2014.11.25} } @Article{Kay2008, Title = {Identifying natural images from human brain activity}, Author = {Kay, K.N. and Naselaris, T. and Prenger, R.J. and Gallant, J.L.}, Journal = {Nature}, Year = {2008}, Number = {7185}, Pages = {352--355}, Volume = {452}, File = {kay2008identifying.pdf:NEURO\\kay2008identifying.pdf:PDF}, Owner = {jmscarlett}, Publisher = {[London: Macmillan Journals], 1869-}, Timestamp = {2014.11.25} } @Article{Keerthi1988, Title = {{O}ptimal infinite-horizon feedback laws for a general class of constrained discrete-time systems: {S}tability and moving-horizon approximations}, Author = {Keerthi, S.S. and Gilbert, E.G.}, Journal = {J. Opt. Theory and Apps.}, Year = {1988}, Number = {2}, Pages = {265--293}, Volume = {57}, File = {Keerthi1988.pdf:Keerthi1988.pdf:PDF}, Keywords = {optimal control NMPC}, Mlanguage = {D}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Kefayati2013, Title = {Semi-Spatio Temporal fMRI Brain Decoding}, Author = {Kefayati, Mohammad Hadi and Sheikhzadeh, Hamid and Rabiee, Hamid R and Soltani-Farani, Ali}, Booktitle = {Int. Workshop Pattern Recog. Neuroimaging}, Year = {2013}, File = {kefayati2013semispationtemporal.pdf:NEURO/kefayati2013semispationtemporal.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2013.09.05} } @Article{Keiper1991, Title = {{T}he analysis of generalized backwards difference formula methods applied to {H}essenberg form differential-algebraic equations}, Author = {Keiper, J.B. and Gear, C.W.}, Journal = {{SIAM} Journal on Numeric al Analysis}, Year = {1991}, Number = {3}, Pages = {833--858}, Volume = {28}, Keywords = {DAE}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kekatos2013, Title = {Distributed robust power system state estimation}, Author = {Kekatos, Vassilis and Giannakis, Geogios B.}, Journal = {IEEE Trans. Power Syst.}, Year = {2013}, Month = may, Number = {2}, Pages = {1617--1626}, Volume = {28}, Owner = {yhli}, Timestamp = {2014.11.06} } @InProceedings{Kellett2002, Title = {{O}n {R}obustness of {S}tability and {L}yapunov {F}unctions for {D}iscontinuous {D}ifference {E}quations}, Author = {Kellett, C.M. and Teel, A.R.}, Booktitle = cdc42, Year = {2002}, Address = {Las Vegas, USA}, Pages = {4282--4287}, Keywords = {robust optimal control}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Kelner2014, Title = {An almost-linear-time algorithm for approximate max flow in undirected graphs, and its multicommodity generalizations}, Author = {Kelner, Jonathan A. and Lee, Yin Tat and Orecchia, Lorenzo and Sidford, Aaron}, Booktitle = {Proc. ACM-SIAM Symp. Discrete Algorithms}, Year = {2014}, Pages = {217--226}, Owner = {yhli}, Timestamp = {2014.02.26} } @Book{Kendall1957, Title = {A Course in Multivariate Analysis}, Author = {Kendall, M.}, Publisher = {Griffin}, Year = {1957}, Address = {London}, Owner = {baldazen}, Timestamp = {2008.06.27} } @Article{Kerrigan2004, Title = {{F}eedback min-max model predictive control using a single linear program: {R}obust stability and the explicit solution}, Author = {E.C. Kerrigan and J.M. Maciejowski}, Journal = {Int. J. Robust and Nonlinear Control}, Year = {2004}, Pages = {395--413}, Volume = {14}, Keywords = {robust optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Kerrigan2003, Title = {{R}obustly stable feedback min-max model predictive control}, Author = {E.C. Kerrigan and J.M. Maciejowski}, Booktitle = {Proc. Amer. Control Conf.}, Year = {2003}, Address = {Denver, Colorado, USA}, Month = {June}, Keywords = {robust optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Kerrigan2002, Title = {{F}eedback min-max model predictive control using a single linear program: {R}obust stability and the explicit solution}, Author = {E.C. Kerrigan and J.M. Maciejowski}, Institution = {Cambridge University Engineering Department}, Year = {2002}, Month = {October}, Number = {440}, Key = {CUED/F-INFENG}, Keywords = {robust optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Khalil1996, Title = {{N}onlinear {S}ystems}, Author = {Khalil, H.K.}, Publisher = {Prentice Hall}, Year = {1996}, Address = {Upper Saddle River, NJ}, Edition = {Second}, Date = {26.11.1997}, Keywords = {optimal control}, Owner = {quoctd}, Signature = {eric}, Timestamp = {2013.08.23} } @Article{Khuller1999, Title = {The budgeted maximum coverage problem}, Author = {Khuller, Samir and Moss, Anna and Naor, Joseph Seffi}, Journal = {Information Processing Letters}, Year = {1999}, Number = {1}, Pages = {39--45}, Volume = {70}, File = {khuller1999budgeted.pdf:khuller1999budgeted.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Elsevier}, Timestamp = {2014.11.25} } @Article{Kienle2000, Title = {{L}ow-order dynamic models for ideal multicomponent distillation processes using nonlinear wave propagation theory}, Author = {Kienle, A.}, Journal = {Chem. Eng. Sci.}, Year = {2000}, Pages = {1817--1828}, Volume = {55}, Keywords = {chemistry model reduction}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kim2008, Title = {Clustering of change patterns using Fourier coefficients.}, Author = {Jaehee Kim and Haseong Kim}, Journal = {Bioinformatics}, Year = {2008}, Month = {Jan}, Number = {2}, Pages = {184--191}, Volume = {24}, Abstract = {MOTIVATION: To understand the behavior of genes, it is important to explore how the patterns of gene expression change over a time period because biologically related gene groups can share the same change patterns. Many clustering algorithms have been proposed to group observation data. However, because of the complexity of the underlying functions there have not been many studies on grouping data based on change patterns. In this study, the problem of finding similar change patterns is induced to clustering with the derivative Fourier coefficients. The sample Fourier coefficients not only provide information about the underlying functions, but also reduce the dimension. In addition, as their limiting distribution is a multivariate normal, a model-based clustering method incorporating statistical properties would be appropriate. RESULTS: This work is aimed at discovering gene groups with similar change patterns that share similar biological properties. We developed a statistical model using derivative Fourier coefficients to identify similar change patterns of gene expression. We used a model-based method to cluster the Fourier series estimation of derivatives. The model-based method is advantageous over other methods in our proposed model because the sample Fourier coefficients asymptotically follow the multivariate normal distribution. Change patterns are automatically estimated with the Fourier representation in our model. Our model was tested in simulations and on real gene data sets. The simulation results showed that the model-based clustering method with the sample Fourier coefficients has a lower clustering error rate than K-means clustering. Even when the number of repeated time points was small, the same results were obtained. We also applied our model to cluster change patterns of yeast cell cycle microarray expression data with alpha-factor synchronization. It showed that, as the method clusters with the probability-neighboring data, the model-based clustering with our proposed model yielded biologically interpretable results. We expect that our proposed Fourier analysis with suitably chosen smoothing parameters could serve as a useful tool in classifying genes and interpreting possible biological change patterns. AVAILABILITY: The R program is available upon the request.}, Doi = {10.1093/bioinformatics/btm568}, File = {kim08clustering.pdf:BIO/Gene Expression/kim08clustering.pdf:PDF}, Keywords = {Algorithms; Artificial Intelligence; Cluster Analysis; Fourier Analysis; Gene Expression Profiling; Multigene Family; Oligonucleotide Array Sequence Analysis; Pattern Recognition, Automated; Saccharomyces cerevisiae Proteins}, Owner = {baldazen}, Pii = {btm568}, Pmid = {18025003}, Timestamp = {2008.02.11}, Url = {http://dx.doi.org/10.1093/bioinformatics/btm568} } @Conference{Kim2010a, Title = {Fast active-set-type algorithms for $\ell_1$-regularized linear regression}, Author = {J. Kim and H. Park}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2010}, Address = {Sardinia, Italy}, Pages = {397--404}, Volume = {9}, Owner = {quoctd}, Timestamp = {2013.07.17} } @Article{Kim2003, Title = {Bioinformatic principles underlying the information content of transcription factor binding sites.}, Author = {Jan T Kim and Thomas Martinetz and Daniel Polani}, Journal = {J Theor Biol}, Year = {2003}, Month = {Feb}, Number = {4}, Pages = {529--544}, Volume = {220}, Abstract = {Empirically, it has been observed in several cases that the information content of transcription factor binding site sequences (R(sequence)) approximately equals the information content of binding site positions (R(frequency)). A general framework for formal models of transcription factors and binding sites is developed to address this issue. Measures for information content in transcription factor binding sites are revisited and theoretic analyses are compared on this basis. These analyses do not lead to consistent results. A comparative review reveals that these inconsistent approaches do not include a transcription factor state space. Therefore, a state space for mathematically representing transcription factors with respect to their binding site recognition properties is introduced into the modelling framework. Analysis of the resulting comprehensive model shows that the structure of genome state space favours equality of R(sequence) and R(frequency) indeed, but the relation between the two information quantities also depends on the structure of the transcription factor state space. This might lead to significant deviations between R(sequence) and R(frequency). However, further investigation and biological arguments show that the effects of the structure of the transcription factor state space on the relation of R(sequence) and R(frequency) are strongly limited for systems which are autonomous in the sense that all DNA-binding proteins operating on the genome are encoded in the genome itself. This provides a theoretical explanation for the empirically observed equality.}, File = {KiMaPo03.pdf:BIO/KiMaPo03.pdf:PDF}, Keywords = {Animals; Binding Sites; Computational Biology; Computer Simulation; Genome; Models, Genetic; Mutation; Transcription Factors}, Owner = {luca}, Pii = {S0022519303931535}, Pmid = {12623284}, Timestamp = {2007.02.13} } @TechReport{Kim, Title = {A Computationally Efficient Oracle Estimator for Additive Nonparametric Regression with Bootstrap Confidence Intervalsx}, Author = {Kim, Linton, Hengartner}, File = {A Computationally Efficient Oracle Estimator for Additive Nonparametri Regression with Bootstrap .pdf:Statistical Learning/A Computationally Efficient Oracle Estimator for Additive Nonparametri Regression with Bootstrap .pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Kim2002, Title = {On the projection of the efficient set and potential applications}, Author = {N.T.B. Kim and L.D. Muu}, Journal = {Optimization}, Year = {2002}, Number = {2}, Pages = {401--421}, Volume = {51}, File = {:Papers/Kim2002.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @TechReport{Kim2010, Title = {Exploiting Sparsity in Linear and Nonlinear Matrix Inequalities via Positive Semidefinite Matrix Completion}, Author = {S. Kim and M. Kojima and M. Mevissen and M. Yamashita}, Institution = {Department of Mathematical and Computing Sciences Tokyo Institute of Technology}, Year = {2010}, Type = {Tech. Report.}, File = {:Papers/Kim2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @InProceedings{Kim2010b, Title = {Tree-guided group lasso for multi-task regression with structured sparsity}, Author = {Kim, S. and Xing, E.}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2010}, Pages = {543--550}, File = {kim2010tree.pdf:kim2010tree.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Kim2008a, Title = {A Minimax Theorem with Applications to Machine Learning, Signal Processing, and Finance}, Author = {S.-J. Kim and S. Boyd}, Journal = {SIAM J. Opt.}, Year = {2008}, Number = {3}, Pages = {1344--1367}, Volume = {19}, File = {:Papers/Kim2008.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Kim2009, Title = {$\ell_1$ Trend Filtering}, Author = {S.-J. Kim and K. Koh and S. Boyd and D. Gorinevsky}, Journal = {SIAM Rev.}, Year = {2009}, Number = {2}, Pages = {339--360}, Volume = {51}, File = {:Papers/Kim2009.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Article{Kimeldorf1971, Title = {Some results on Tchebycheffian spline functions}, Author = {Kimeldorf, G. and Wahba, G.}, Journal = {J. Math. Anal. Apps.}, Year = {1971}, Number = {82-95}, Pages = {38}, Volume = {33}, File = {kimeldorf1971spline.pdf:Statistical Learning/kimeldorf1971spline.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.01.13} } @Article{Kimura2009, Title = {Genetic network inference as a series of discrimination tasks}, Author = {Kimura, Shuhei and Nakayama, Satoshi and Hatakeyama, Mariko}, Journal = {Bioinformatics}, Year = {2009}, Month = {February}, Pages = {btp072+}, Abstract = {Motivation: Genetic network inference methods based on sets of differential equations generally require a great deal of time, as the equations must be solved many times. To reduce the computational cost, researchers have proposed other methods for inferring genetic networks by solving sets of differential equations only a few times, or even without solving them at all. When we try to obtain reasonable network models using these methods, however, we must estimate the time derivatives of the gene expression levels with great precision. In this study, we propose a new method to overcome the drawbacks of inference methods based on sets of differential equations. Results: Our method infers genetic networks by obtaining classifiers capable of predicting the signs of the derivatives of the gene expression levels. For this purpose, we defined a genetic network inference problem as a series of discrimination tasks, then solved the defined series of discrimination tasks with a linear programming machine. Our experimental results demonstrated that the proposed method is capable of correctly inferring genetic networks, and doing so more than 500 times faster than the other inference methods based on sets of differential equations. Next, we applied our method to actual expression data of the bacterial SOS DNA repair system. And finally, we demonstrated that our approach relates to the inference method based on the S-system model. Though our method provides no estimation of the kinetic parameters, it should be useful for researchers interested only in the network structure of a target system. Contact: kimura@ike.tottori-u.ac.jp Supplementary information: See Bioinformatics online. 10.1093/bioinformatics/btp072}, Citeulike-article-id = {4067960}, Doi = {10.1093/bioinformatics/btp072}, File = {:BIO/Gene Networks/kimura09genetworktask.pdf:PDF}, Keywords = {bioinfomatics, gene, graph, multi-output, networks}, Owner = {baldassarre}, Posted-at = {2009-04-29 12:04:08}, Priority = {2}, Timestamp = {2009.04.29}, Url = {http://dx.doi.org/10.1093/bioinformatics/btp072} } @Book{King1994, Title = {{M}athematische {M}odelle mycelf\"ormig wachsender {M}i\-kro\-or\-ga\-nis\-men}, Author = {King, R.}, Publisher = {VDI-Verlag}, Year = {1994}, Address = {D\"usseldorf}, Series = {Fort\-schritt\-be\-rich\-te VDI, Reihe 17}, Volume = {103}, Keywords = {biology}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kirby2010, Title = {From functional analysis to iterative methods}, Author = {R.C. Kirby}, Journal = {SIAM Rev.}, Year = {2010}, Number = {2}, Pages = {269--293}, Volume = {52}, File = {:Papers/Kirby2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Book{Klain1997, Title = {Introduction to Geometric Probability}, Author = {Klain, Daniel A. and Rota, Gian-Carlo}, Publisher = {Cambridge Univ. Press}, Year = {1997}, Address = {Cambridge, UK}, Owner = {yhli}, Timestamp = {2014.07.18} } @InCollection{Klatt1993, Title = {{R\"uhr\-kes\-sel\-re\-ak\-tor} mit {Parallel-} und {Folgereaktion}.}, Author = {Klatt, K.-U. and Engell, S.}, Booktitle = {{Nichtlineare} {Regelung} -- {Methoden}, {Werkzeuge}, {Anwendungen}. VDI-Berichte Nr. 1026}, Publisher = {VDI-Verlag}, Year = {1993}, Address = {D\"usseldorf}, Editor = {Engell, S.}, Pages = {101--108}, Keywords = {chemistry}, Mlanguage = {D}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Klatte2001, Title = {Nonsmooth equations in optimization: regularity, calculus, methods and applications}, Author = {D. Klatte and B. Kummer}, Editor = {New York}, Publisher = {Springer-Verlag}, Year = {2001}, Owner = {quoctd}, Timestamp = {2012.04.07} } @Book{Klatte2002, Title = {{N}onsmooth {E}quations in {O}ptimization: {R}egularity, {C}alculus, {M}ethods and {A}pplications}, Author = {D. Klatte and B. Kummer}, Publisher = {Kluwer Academic Publishers}, Year = {2002}, Address = {Dordrecht}, Keywords = {Optimization}, Owner = {quoctd}, Timestamp = {2012.04.08} } @InCollection{Klee1972, Title = {{H}ow {G}ood is the {S}implex {A}lgorithm?}, Author = {V. Klee and G.J. Minty}, Booktitle = {Inequalities}, Publisher = {Academic Press}, Year = {1972}, Address = {New York}, Editor = {O. Shisha}, Pages = {159--175}, Volume = {III}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Kocvara2005, Title = {A nonlinear {SDP} algorithm for static output feedback problems in $\mathrm{COMPL}_{\mathrm{e}}\mathrm{ib}$}, Author = {M. Ko\v{c}vara and F. Leibfritz and M. Stingl and D. Henrion}, Booktitle = {Proc. IFAC World Congress}, Year = {2005}, Address = {Prague, Czech Rep.}, Owner = {quoctd}, Timestamp = {2012.04.09} } @InProceedings{Kocvara2003, Title = {{PENNON} - {A} {G}eneralized {A}ugmented {L}agrangian {M}ethod for {S}emidefinite {P}rogramming}, Author = {M. Ko\v{c}vara and M. Stingl}, Booktitle = {High Performance Algorithms and Software for Nonlinear Optimization}, Year = {2003}, Address = {Dordrecht}, Editor = { G. Di Pillo and A. Murli}, Pages = {297--315}, Publisher = {Kluwer Academic Publishers}, Keywords = {semidefinite}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Kojima1993, Title = {Horizontal and vertical decomposition in interior point methods for linear programs}, Author = {M. Kojima and N. Megiddo and S. Mizuno and et al}, Institution = {Information Sciences, Tokyo Institute of Technology}, Year = {1993}, Address = {Tokyo}, Type = {Technical Report.}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Koko2013, Title = {Parallel {U}zawa Method for Large-Scale Minimization of Partially Separable Functions}, Author = {J. Koko}, Journal = {J. Opt. Theory and Apps.}, Year = {2013}, Pages = {1--16}, Volume = {xx}, File = {:Papers/Koko2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Article{Kolda2001, Title = {Orthogonal tensor decompositions}, Author = {Kolda, Tamara G}, Journal = {SIAM Journal on Matrix Anal. and Apps.}, Year = {2001}, Number = {1}, Pages = {243--255}, Volume = {23}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Kolda2009, Title = {Tensor decompositions and applications}, Author = {Kolda, Tamara G and Bader, Brett W}, Journal = {SIAM Rev.}, Year = {2009}, Number = {3}, Pages = {455--500}, Volume = {51}, Owner = {jmscarlett}, Publisher = {SIAM}, Timestamp = {2014.11.25} } @Article{Kolmogorov2004, Title = {What energy functions can be minimized via graph cuts?}, Author = {Kolmogorov, V. and Zabin, R.}, Journal = {IEEE Trans. Patt. Analysis and Mach. Intel.}, Year = {2004}, Number = {2}, Pages = {147--159}, Volume = {26}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Book{Koltchinskii2011, Title = {Oracle Inequalities in Empirical Risk Minimization and Sparse Recovery Problems}, Author = {Koltchinskii, Vladimir}, Publisher = {Springer-Verl.}, Year = {2011}, Address = {Berlin}, Owner = {yhli}, Timestamp = {2014.07.25} } @Article{Koltchinskii2009, Title = {Sparsity in penalized empirical risk minimization}, Author = {Koltchinskii, Vladimir}, Journal = {Ann. Inst. Henri Poincar{\'{e}} - Prob. Stat.}, Year = {2009}, Number = {1}, Pages = {7--57}, Volume = {45}, Owner = {yhli}, Timestamp = {2014.04.30} } @Article{Komodakis2010, Title = {{MRF} {E}nergy {M}inimization \& {B}eyond via {D}ual {D}ecomposition}, Author = {N. Komodakis and N. Paragios and G. Tziritas}, Journal = {IEEE Trans. Patt. Anal. and Mach. Intel.}, Year = {2010}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Book{Konnov2001, Title = {Combined relaxation methods for variational inequalities.}, Author = {I.V. Konnov}, Publisher = {Springer-Verlag}, Year = {2001}, Owner = {quoctd}, Timestamp = {2012.11.28} } @Article{Kontogiorgis1996, Title = {Alternating direction splittings for block angular parallel optimization}, Author = {S. Kontogiorgis and R.D. Leone and R. Meyer}, Journal = {J. Opt. Theory and Apps.}, Year = {1996}, Number = {1}, Pages = {1--29}, Volume = {90}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Kontoyiannis2006, Title = {Measure concentration for compound {P}oisson distributions}, Author = {Kontoyiannis, I. and Madiman, M.}, Journal = {Elec. J. Stats.}, Year = {2006}, Pages = {45--57}, Volume = {11}, Owner = {yhli}, Timestamp = {2014.02.11} } @Article{Kopsinis2011, Title = {Online sparse system identification and signal reconstruction using projections onto weighted balls}, Author = {Kopsinis, Yannis and Slavakis, Konstantinos and Theodoridis, Sergios}, Journal = {IEEE Trans. Sig. Proc.}, Year = {2011}, Number = {3}, Pages = {936--952}, Volume = {59}, File = {kopsinis2011online.pdf:kopsinis2011online.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Conference{Koren2009, Title = {Collaborative filtering with temporal dynamics}, Author = {Koren, Y.}, Booktitle = {Proc. ACM SIGKDD Int. Conf. Knowledge Discovery and Data Mining}, Year = {2009}, Organization = {ACM New York, NY, USA}, Pages = {447--456}, File = {koren2009cftemporal.pdf:Statistical Learning/COLLABORATIVE FILTERING/koren2009cftemporal.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.03.17} } @InProceedings{Koren2008, Title = {Factorization meets the neighborhood: a multifaceted collaborative filtering model}, Author = {Koren, Yehuda}, Booktitle = {KDD '08: Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining}, Year = {2008}, Address = {New York, NY, USA}, Pages = {426--434}, Publisher = {ACM}, Doi = {http://doi.acm.org/10.1145/1401890.1401944}, File = {koren2008factorization.pdf:Statistical Learning/COLLABORATIVE FILTERING/koren2008factorization.pdf:PDF}, ISBN = {978-1-60558-193-4}, Location = {Las Vegas, Nevada, USA}, Owner = {baldassarre}, Timestamp = {2010.05.17} } @Article{Korpelevic1976, Title = {An extragradient method for finding saddle-points and for other problems}, Author = {G. M. Korpelevic}, Journal = {\`{E}konom. i Mat. Metody.}, Year = {1976}, Number = {4}, Pages = {747--756}, Volume = {12}, Owner = {quoctd}, Timestamp = {2013.08.20} } @Article{Kosinski2013, Title = {Private traits and attributes are predictable from digital records of human behavior}, Author = {Kosinski, Michal and Stillwell, David and Graepel, Thore}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2013}, Owner = {jmscarlett}, Publisher = {National Acad Sciences}, Timestamp = {2014.11.25} } @TechReport{Kostina2001, Title = {{R}obust {P}arameter {E}stimation in {D}ynamic {S}ystems}, Author = {Kostina, E.A.}, Institution = {SFB 359, Universit\"at Heidelberg}, Year = {2001}, Keywords = {robust parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kothare1996, Title = {{R}obust constrained model predictive control using linear matrix inequalities}, Author = {M. Kothare and V. Balakrishnan and M. Morari}, Journal = {Automatica}, Year = {1996}, Month = nov, Number = {10}, Pages = {1361--1379}, Volume = {32}, File = {Kothare1996.pdf:Kothare1996.pdf:PDF}, Keywords = {robust optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Kouvaritakis2001, Title = {{N}on-{L}inear {P}redictive {C}ontrol: {T}heory and {P}ractice}, Author = {B. Kouvaritakis and M. Cannon}, Publisher = {{IEE} {P}ublishing}, Year = {2001}, Address = {Stevenage}, Edition = {1}, Note = {ISBN: 0852969848}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Kraemer2000, Title = {{S}o l\"ugt man mit {S}tatistik}, Author = {W. Kr\"amer}, Publisher = {Piper}, Year = {2000}, Address = {M\"unchen}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{KraemerEis1985, Title = {{E}in {M}ehrzielverfahren zur numerischen {B}erechnung optimaler {F}eedback--{S}teuerungen bei beschr\"ankten nichtlinearen {S}teuerungsproblemen}, Author = {Kr\"amer-Eis, P.}, Publisher = {Universit\"at Bonn}, Year = {1985}, Address = {Bonn}, Series = {Bonner Mathematische Schriften}, Volume = {166}, Keywords = {optimal control multiple shooting NMPC agbock}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{KraemerEis1987, Title = {{N}umerical {T}reatment of {S}tate and {C}ontrol {C}onstraints in the {C}omputation of {F}eedback {L}aws for {N}onlinear {C}ontrol {P}roblems}, Author = {Kr\"amer-Eis, P. and Bock, H.G.}, Booktitle = {Large Scale Scientific Computing}, Publisher = {Birkh\"auser}, Year = {1987}, Address = {Basel Boston Berlin}, Editor = {P. Deuflhard et al. }, Pages = {287--306}, Keywords = {optimal control multiple shooting NMPC optimality conditions agbock}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Kraft1985, Title = {{O}n converting optimal control problems into nonlinear programming problems}, Author = {Kraft, D.}, Booktitle = {Computational Math. Prog.}, Publisher = {Springer}, Year = {1985}, Editor = {K. Schittkowski}, Pages = {261--280}, Series = {NATO ASI}, Volume = {F15}, Keywords = {optimal control multiple shooting}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Krahmer2014, Title = {Suprema of chaos processes and the restricted isometry property}, Author = {Krahmer, Felix and Mendelson, Shahar and Rauhut, Holger}, Journal = {Comms. on Pure and App. Math.}, Year = {2014}, Owner = {jmscarlett}, Publisher = {Wiley Online Library}, Timestamp = {2014.11.25} } @Article{Kraning2013, Title = {Dynamic network energy management via proximal message passing}, Author = {Kraning, Matt and Chu, Eric and Lavaei, Javad and Boyd, Stephen}, Journal = {Foud. Trends Opt.}, Year = {2013}, Number = {2}, Pages = {70--122}, Volume = {1}, Owner = {yhli}, Timestamp = {2014.11.07} } @Article{Krause2010a, Title = {Submodular dictionary selection for sparse representation}, Author = {Krause, A. and Cevher, V.}, Journal = {Proc. ICML}, Year = {2010}, Pages = {567--574}, File = {krause2010submodular.pdf:krause2010submodular.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Krause2011, Title = {Submodularity and its applications in optimized information gathering}, Author = {Krause, Andreas and Guestrin, Carlos}, Journal = {ACM Trans. Intell. Syst. Technol.}, Year = {2011}, Month = jul, Number = {4}, Pages = {32:1--32:20}, Volume = {2}, Acmid = {1989736}, Address = {New York, NY, USA}, Articleno = {32}, Doi = {10.1145/1989734.1989736}, File = {krause2011submodularity.pdf:krause2011submodularity.pdf:PDF}, ISSN = {2157-6904}, Issue_date = {July 2011}, Keywords = {Information gathering, active learning, blogs, computational sustainability, environmental monitoring, information overload, sensor networks, submodular functions}, Numpages = {20}, Owner = {jmscarlett}, Publisher = {ACM}, Timestamp = {2014.11.25}, Url = {http://doi.acm.org/10.1145/1989734.1989736} } @Article{Krause2008, Title = {Near-optimal sensor placements in Gaussian processes: Theory, efficient algorithms and empirical studies}, Author = {Krause, A. and Singh, A. and Guestrin, C.}, Journal = {J. Mach. Learn. Res.}, Year = {2008}, Pages = {235--284}, Volume = {9}, File = {krause2008near.pdf:krause2008near.pdf:PDF}, Owner = {jmscarlett}, Publisher = {JMLR. org}, Timestamp = {2014.11.25} } @Book{Krengel2002, Title = {{E}inf\"uhrung in die {W}ahrscheinlichkeitstheorie und {S}tatistik}, Author = {U. Krengel}, Publisher = {Vieweg}, Year = {2002}, Address = {Wiesbaden}, Edition = {6}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Krishnapuram2005, Title = {{S}parse {M}ultinomial {L}ogistic {R}egression: {F}ast {A}lgorithms and {G}eneralization {B}ounds}, Author = {B. Krishnapuram and M. Figueiredo and L. Carin and H. Hartemink}, Journal = {IEEE Trans. Pattern Analysis and Machine Intelligence (PAMI)}, Year = {2005}, Pages = {957--968}, Volume = {27}, Owner = {quoctd}, Timestamp = {2014.07.28} } @InProceedings{Kroemer2011, Title = {A Non-Parametric Approach to Dynamic Programming}, Author = {Kroemer, O.B. and Peters, J.R.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2011}, Editor = {J. Shawe-Taylor and R.S. Zemel and P. Bartlett and F.C.N. Pereira and K.Q. Weinberger}, Pages = {1719--1727}, File = {kroemer2011nonparametric.pdf:Statistical Learning\\REINFORCEMENT LEARNING\\kroemer2011nonparametric.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InCollection{Kronseder2001, Title = {{T}owards {N}onlinear {M}odel {B}ased {P}redictive {O}ptimal {C}ontrol of {L}arge-{S}cale {P}rocess {M}odels with {A}pplication to {A}ir {S}eparation {P}lants}, Author = {Kronseder, T. and von Stryk, O. and Bulirsch, R.}, Booktitle = {Online Optimization of Large Scale Systems: State of the Art}, Publisher = {Springer}, Year = {2001}, Editor = {M. Gr\"otschel and S.O. Krumke and J. Rambau}, Pages = {385--412}, Keywords = {optimal control NMPC}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kugelmann1990, Title = {{N}ew general guidance method in constrained optimal control, {P}art 2: {A}pplication to space shuttle guidance}, Author = {Kugelmann, B. and Pesch, H.J.}, Journal = {J. Opt. Theory and Apps.}, Year = {1990}, Number = {3}, Pages = {437--446}, Volume = {67}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Kuhn1951, Title = {{N}onlinear programming}, Author = {Kuhn, H.W. and A.W. Tucker}, Booktitle = {Proc. Berkeley Symp. Math. Stats. Prob.}, Year = {1951}, Address = {Berkeley}, Editor = {J. Neyman}, Publisher = {University of California Press}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kulis2009, Title = {Low-Rank Kernel Learning with Bregman Matrix Divergences}, Author = {B. Kulis and M. Sustik and I. S. Dhillon}, Journal = {J. Mach. Learn. Res.}, Year = {2009}, Pages = {341--376}, Volume = {10}, Owner = {quoctd}, Timestamp = {2013.03.22} } @Article{Kuppinger2012, Title = {Uncertainty relations and sparse signal recovery for pairs of general signal sets}, Author = {Kuppinger, Patrick and Durisi, Giuseppe and B\"{o}lcskei, Helmut}, Journal = {IEEE Trans. Inf. Theory}, Year = {2012}, Month = jan, Number = {1}, Pages = {263--277}, Volume = {58}, Owner = {yhli}, Timestamp = {2014.07.22} } @Book{Kurzhanski1997, Title = {Ellipsoidal Calculus for Estimation and Control}, Author = {A.B. Kurzhanski and P. Valyi}, Publisher = {Birkh\"auser Boston}, Year = {1997}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kurzhanski2006, Title = {Ellipsoidal techniques for reachability analysis of discrete-time linear systems.}, Author = {A.A. Kurzhanski and P. Varaiya.}, Journal = {Comm. in Inf. and Sys.}, Year = {2006}, Pages = {179--192}, Volume = {6}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Kutyniok2014, Title = {Shearlab 3D: Faithful digital shearlet transforms based on compactly supported shearlets}, Author = {Kutyniok, Gitta and Lim, Wang-Q and Reisenhofer, Rafael}, Journal = {arXiv preprint arXiv:1402.5670}, Year = {2014}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Kyrillidis2013a, Title = {Sparse projections onto the simplex}, Author = {A. Kyrillidis and S. Becker and V. Cevher and C. Koch}, Journal = {JMLR W\&CP}, Year = {2013}, Pages = {235-–243}, Owner = {quoctd}, Timestamp = {2014.04.04} } @InProceedings{Kyrillidis2013b, Title = {Fast proximal algorithms for self-concordant function minimization with application to sparse graph selection}, Author = {Kyrillidis, A. and Cevher, V.}, Booktitle = {IEEE Int. Conf. Acoustics, Speech, and Sig. Proc. (ICASSP)}, Year = {2013}, Organization = {IEEE}, Pages = {6585--6589}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Kyrillidis2012, Title = {Combinatorial selection and least absolute shrinkage via the {CLASH} algorithm}, Author = {Kyrillidis, A. and Cevher, V.}, Booktitle = {IEEE Int. Symp. Inf. Theory}, Year = {2012}, Organization = {Ieee}, Pages = {2216--2220}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Kyrillidis2011, Title = {Recipes on hard thresholding methods}, Author = {Kyrillidis, A. and Cevher, V.}, Booktitle = {IEEE Int. Workshop Comp. Adv. Multi-Sensor Adaptive Proc. (CAMSAP)}, Year = {2011}, Number = {EPFL-CONF-183059}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Conference{Kyrillidis2014, Title = {Scalable Sparse Covariance Estimation via Self-Concordance. AAAI 2014: 1946-1952}, Author = {A. Kyrillidis and R. Karimi and Q. Tran-Dinh and V. Cevher}, Booktitle = {Proc. of the Twenty-Eighth AAAI Conference on Artificial Intelligence}, Year = {2014}, Pages = {1946--1952}, Owner = {quoctd}, Timestamp = {2014.09.29} } @InProceedings{Kyrillidis2012a, Title = {Hard thresholding with norm constraints}, Author = {Kyrillidis, A. and Puy, G. and Cevher, V.}, Booktitle = {IEEE Int. Conf. Acoustics, Speech, and Sig. Proc. (ICASSP)}, Year = {2012}, Number = {EPFL-CONF-183061}, Organization = {Ieee}, Pages = {3645--3648}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Kyrillidis2012b, Title = {Combinatorial Selection and Least Absolute Shrinkage via the {CLASH} Algorithm}, Author = {Anastasios T. Kyrillidis and Volkan Cevher}, Journal = {CoRR}, Year = {2012}, Volume = {abs/1203.2936}, Bibsource = {DBLP, http://dblp.uni-trier.de}, Ee = {http://arxiv.org/abs/1203.2936}, File = {kyrillidis2012clash.pdf:Statistical Learning\\SPARSITY\\kyrillidis2012clash.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Kyrillidis2012d, Title = {Sublinear Time, Approximate Model-based Sparse Recovery For All}, Author = {Anastasios T. Kyrillidis and Volkan Cevher}, Journal = {CoRR}, Year = {2012}, Volume = {abs/1203.4746}, Bibsource = {DBLP, http://dblp.uni-trier.de}, Ee = {http://arxiv.org/abs/1203.4746}, File = {kyrillidis2012sublinear.pdf:Statistical Learning\\SPARSITY\\kyrillidis2012sublinear.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{L.Grosenicksubmitted, Title = {Robust and interpretable models for whole-brain fMRI analysis}, Author = {L. Grosenick, B. Klingenberg, B. Knutson, J. E. Taylor}, Journal = {NeuroImage}, Year = {submitted}, File = {grosenick2012robust.pdf:NEURO\\grosenick2012robust.pdf:PDF}, Keywords = {fMRI, brain decoding, multivariate models, structured sparsity, elastic net, sparsity}, Owner = {BaldaZen}, Timestamp = {2012.01.12} } @InProceedings{Labate2005, Title = {Sparse multidimensional representation using shearlets}, Author = {Labate, Demetrio and Lim, Wang-Q and Kutyniok, Gitta and Weiss, Guido}, Booktitle = {Optics \& Photonics 2005}, Year = {2005}, Organization = {International Society for Optics and Photonics}, Pages = {59140U--59140U}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Labrinidis2012, Title = {Challenges and opportunities with big data}, Author = {A. Labrinidis and H.V. Jagadish}, Journal = {Proceedings of the VLDB Endowment}, Year = {2012}, Number = {12}, Pages = {2032--2033}, Volume = {5}, Owner = {quoctd}, Timestamp = {2013.09.25} } @Article{Lai2003, Title = {Stochastic approximation}, Author = {Lai, Tze Leung}, Journal = {Ann. Stats.}, Year = {2003}, Number = {2}, Pages = {391--406}, Volume = {31}, Owner = {yhli}, Timestamp = {2014.04.14} } @Article{Lalee1998, Title = {{O}n the implementation of an algorithm for large-scale equality constrained optimization}, Author = {Lalee, M. and Nocedal, J. and Plantenga, T.}, Journal = {{SIAM} J. Opt.}, Year = {1998}, Number = {3}, Pages = {682--706}, Volume = {8}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lam2009, Title = {Sparsistency and Rates of Convergence in Large Covariance Matrix Estimation}, Author = {C. Lam and J. Fan}, Journal = {Ann. Stats.}, Year = {2009}, Pages = {4254-4278}, Volume = {37}, Owner = {yhli}, Timestamp = {2014.10.06} } @Article{Lampert2008, Title = {A multiple kernel learning approach to joint multi-class object detection}, Author = {Lampert, C.H. and Blaschko, M.B.}, Journal = {Lec. Notes Comp. Sci.}, Year = {2008}, Pages = {31--40}, Volume = {5096}, File = {lampert2008multiple.pdf:Statistical Learning/Multiclass/lampert2008multiple.pdf:PDF}, Owner = {baldassarre}, Publisher = {Springer}, Timestamp = {2010.02.16} } @Article{L2013, Title = {Bundle-level type methods uniformly optimal for smooth and nonsmooth convex optimization}, Author = {G. Lan}, Journal = {Math. Program.}, Year = {2013}, Pages = {1--45}, Volume = {DOI 10.1007/s10107-013-0737-x}, Owner = {quoctd}, Timestamp = {2014.04.17} } @Article{Lan2012, Title = {An optimal method for stochastic composite optimization}, Author = {Lan, Guanghui}, Journal = {Math. Program., Ser. A}, Year = {2012}, Pages = {365--397}, Volume = {133}, Owner = {yhli}, Timestamp = {2014.08.19} } @Article{Lan2013(underrevision), Title = {”Iteration-complexity of first-order augmented {L}agrangian methods for convex programming}, Author = {G. Lan and R.D.C. Monteiro}, Journal = {Math. Program.}, Year = {2013 (under revision)}, Owner = {quoctd}, Timestamp = {2014.04.02} } @Article{Lan2013, Title = {Iteration complexity of first-order penalty methods for convex programming}, Author = {G. Lan and R.D.C. Monteiro}, Journal = {Math. Program.}, Year = {2013}, Number = {1}, Pages = {115-139}, Volume = {138}, Owner = {quoctd}, Timestamp = {2014.04.02} } @Article{Lanckriet2004, Title = {Learning the kernel matrix with semidefinite programming}, Author = {Lanckriet, G.R.G. and Cristianini, N. and Bartlett, P. and Ghaoui, L.E. and Jordan, M.I.}, Journal = {J. Mach. Learn. Res.}, Year = {2004}, Pages = {27--72}, Volume = {5}, File = {lanckriet2004learning.pdf:Statistical Learning/Kernel Learning/lanckriet2004learning.pdf:PDF}, Owner = {jmscarlett}, Publisher = {JMLR. org}, Timestamp = {2014.11.25} } @Article{Langenberg2012, Title = {Interior point methods for equilibrium problems}, Author = {N. Langenberg}, Journal = {Comp. Opt. Apps.}, Year = {2012}, Pages = {453--483}, Volume = {53}, File = {:Papers/Langenberg2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.01} } @InProceedings{Lattner2004, Title = {{LLVM}: {A} {C}ompilation {F}ramework for {L}ifelong {P}rogram {A}nalysis \& {T}ransformation}, Author = {C. Lattner and V. Adve}, Booktitle = {Proc. Int. Symp. Code Gen. and Opt.}, Year = {2004}, File = {Lattner2004.pdf:Lattner2004.pdf:PDF}, Owner = {joel}, Timestamp = {2012.03.05} } @Article{Lawphongpanich1990, Title = {Benders decomposition for variational inequalities}, Author = {S. Lawphongpanich and D. W. Hearn}, Journal = {Math. Program.}, Year = {1990}, Number = {1--3}, Pages = {231--247}, Volume = {48}, File = {:Papers/Lawphongpanich1990.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Lawson1979, Title = {{B}asic {L}inear {A}lgebra {S}ubrograms for {F}ortran {U}sage}, Author = {C. Lawson and R. Hanson and D. Kincaid and F. Krogh}, Journal = {{ACM} Trans. on Math. Soft.}, Year = {1979}, Pages = {308--325}, Volume = {5}, Keywords = {computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{LeCam1990, Title = {Maximum likelihood: An introduction}, Author = {Le Cam, L.}, Journal = {Int. Stat. Rev.}, Year = {1990}, Number = {2}, Pages = {153--171}, Volume = {58}, Owner = {yhli}, Timestamp = {2014.06.19} } @Book{LeCam1986, Title = {Asymptotic methods in Statistical Decision Theory}, Author = {Le Cam, Lucien}, Publisher = {Springer-Verl.}, Year = {1986}, Address = {New York, NY}, Owner = {yhli}, Timestamp = {2014.06.18} } @Article{Lebiedz2004, Title = {{M}anipulation of surface reaction dynamics by global pressure and local temperature control - a model study}, Author = {Lebiedz, D. and Brandt-Pollmann, U.}, Journal = {Phys. Rev. E}, Year = {2004}, Pages = {051609}, Volume = {70}, Fjournal = {Chaos}, Keywords = {agbock chemistry optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lebiedz2003, Title = {{M}anipulation of {S}elf-{A}ggregation {P}atterns and {W}aves in a {R}eaction-{D}iffusion {S}ystem by {O}ptimal {B}oundary {C}ontrol {S}trategies}, Author = {Lebiedz, D. and Brandt-Pollmann, U.}, Journal = {Phys. Rev. Lett.}, Year = {2003}, Number = {20}, Pages = {208301}, Volume = {91}, Fjournal = {Physical Review Letters}, Keywords = {agbock optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{LeCam1970, Title = {On the assumptions used to prove the asymptotic normality of maximum likelihood estimates}, Author = {LeCam, L.}, Journal = {Ann. Math. Stat.}, Year = {1970}, Number = {3}, Pages = {802--828}, Volume = {41}, Owner = {yhli}, Timestamp = {2014.07.28} } @Book{Ledoux1991, Title = {Probability in {B}anach Spaces}, Author = {Ledoux, Michel and Talagrand, Michel}, Publisher = {Springer-Verl.}, Year = {1991}, Address = {Berlin}, Owner = {yhli}, Timestamp = {2014.10.30} } @Book{Lee1968, Title = {{F}oundations of {O}ptimal {C}ontrol {T}heory}, Author = {Lee, E.B. and L. Markus}, Publisher = {Wiley}, Year = {1968}, Address = {New York}, Keywords = {optimal control optimality conditions indirect methods}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Lee2013b, Title = {Structure Learning of Mixed Graphical Models}, Author = {Lee, J. and Hastie, T.}, Booktitle = {Int. Conf. Art. Intel. Stats. (AISTATS)}, Year = {2013}, Pages = {388--396}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Lee2014a, Title = {Proximal Newton-type methods for convex optimization}, Author = {J.D. Lee and Y. Sun and M.A. Saunders}, Journal = {SIAM J. Opt.}, Year = {2014}, Number = {3}, Pages = {1420--1443}, Volume = {24}, Owner = {quoctd}, Timestamp = {2012.11.23} } @Article{Lee2012, Title = {Proximal Newton-type methods for convex optimization}, Author = {J.D. Lee and Y. Sun and M.A. Saunders}, Journal = {Tech. Report.}, Year = {2012}, Pages = {1--25}, Owner = {quoctd}, Timestamp = {2012.11.23} } @Article{Lee2014, Title = {On model selection consistency of {$M$}-estimators with geometrically decomposable penalties}, Author = {Lee, Jason D. and Sun, Yuekai and Taylor, Jonathan E.}, Year = {2014}, Note = {arXiv:1305.7477v7}, Owner = {yhli}, Timestamp = {2014.08.05} } @InProceedings{Lee2013a, Title = {On model selection consistency of {M}-estimators with geometrically decomposable penalties}, Author = {Lee, Jason D. and Sun, Yuekai and Taylor, Jonathan E.}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2013}, Owner = {yhli}, Timestamp = {2014.08.05} } @Article{Lee1994, Title = {{S}tate-space interpretation of model predictive control}, Author = {Lee, J. H. and Morari, M. and Garc{\'\i}a, C.E.}, Journal = {Automatica}, Year = {1994}, Number = {4}, Pages = {707--717}, Volume = {30}, Keywords = {optimal control NMPC}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lee1997, Title = {{W}orst-case {F}ormulations of {M}odel {P}redictive {C}ontrol for {S}ystems with {B}ounded {P}arameters}, Author = {J. H. Lee and Z. Yu}, Journal = {Automatica}, Year = {1997}, Number = {5}, Pages = {763--781}, Volume = {33}, File = {Lee1997.pdf:Lee1997.pdf:PDF}, Keywords = {optimal control NMPC robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lee2010, Title = {Admira: Atomic decomposition for minimum rank approximation}, Author = {Lee, K. and Bresler, Y.}, Journal = {IEEE Trans. Inf. Theory}, Year = {2010}, Number = {9}, Pages = {4402--4416}, Volume = {56}, File = {lee2010admira.pdf:lee2010admira.pdf:PDF}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Lee2010a, Title = {Biclustering via sparse singular value decomposition}, Author = {Lee, M. and Shen, H. and Huang, J.Z. and Marron, JS}, Journal = {Biometrics}, Year = {2010}, Number = {4}, Pages = {1087--1095}, Volume = {66}, File = {lee2010biclustering.pdf:Statistical Learning\\lee2010biclustering.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Wiley Online Library}, Timestamp = {2014.11.25} } @Article{Lee2002, Title = {Transcriptional regulatory networks in Saccharomyces cerevisiae.}, Author = {Tong Ihn Lee and Nicola J Rinaldi and François Robert and Duncan T Odom and Ziv Bar-Joseph and Georg K Gerber and Nancy M Hannett and Christopher T Harbison and Craig M Thompson and Itamar Simon and Julia Zeitlinger and Ezra G Jennings and Heather L Murray and D. Benjamin Gordon and Bing Ren and John J Wyrick and Jean-Bosco Tagne and Thomas L Volkert and Ernest Fraenkel and David K Gifford and Richard A Young}, Journal = {Science}, Year = {2002}, Month = {Oct}, Number = {5594}, Pages = {799--804}, Volume = {298}, Abstract = {We have determined how most of the transcriptional regulators encoded in the eukaryote Saccharomyces cerevisiae associate with genes across the genome in living cells. Just as maps of metabolic networks describe the potential pathways that may be used by a cell to accomplish metabolic processes, this network of regulator-gene interactions describes potential pathways yeast cells can use to regulate global gene expression programs. We use this information to identify network motifs, the simplest units of network architecture, and demonstrate that an automated process can use motifs to assemble a transcriptional regulatory network structure. Our results reveal that eukaryotic cellular functions are highly connected through networks of transcriptional regulators that regulate other transcriptional regulators.}, Doi = {10.1126/science.1075090}, File = {Lee et al 2002 - Transcriptional Regulatory Networks - Supp.pdf:BIO/Lee et al 2002 - Transcriptional Regulatory Networks - Supp.pdf:PDF}, Keywords = {Algorithms; Cell Cycle; Computational Biology; DNA, Fungal; Feedback, Biochemical; Gene Expression Profiling; Gene Expression Regulation, Fungal; Genes, Fungal; Genome, Fungal; Models, Genetic; Promoter Regions (Genetics); Protein Binding; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Transcription, Genetic}, Owner = {luca}, Pii = {298/5594/799}, Pmid = {12399584}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1126/science.1075090} } @Article{Lee1996, Title = {Efficient agnostic learning of neural networks with bounded fan-in}, Author = {Lee, Wee Sun and Bartlett, Peter L. and Williamson, Robert C.}, Journal = {IEEE Trans. Inf. Theory}, Year = {1996}, Month = nov, Number = {6}, Pages = {2118--2132}, Volume = {42}, Owner = {yhli}, Timestamp = {2014.11.05} } @TechReport{Lee2002a, Title = {Multicategory Support Vector Machines, Theory, and Application to the Classification of Microarray Data and Satellite Radiance Data}, Author = {Yoonkyung Lee}, Institution = {Department of Statistics, University of Wisconsin}, Year = {2002}, File = {Lee02Multicategory.pdf:Statistical Learning/Multiclass/Lee02Multicategory.pdf:PDF}, Owner = {luca}, Timestamp = {2007.03.12} } @Article{Lee2004, Title = {Multicategory Support Vector Machines: Theory and Application to the Classification of Microarray Data and Satellite Radiance Data.}, Author = {Lee, Y. and Lin, Y. and Wahba, G.}, Journal = {J. Amer. Stat. Assoc.}, Year = {2004}, Number = {465}, Pages = {67--82}, Volume = {99}, Owner = {jmscarlett}, Publisher = {American Statistical Association}, Timestamp = {2014.11.25} } @InProceedings{Lee2013, Title = {A new approach to computing maximum flow using electrical flows}, Author = {Lee, Yin Tat and Rao, Satish and Srivastava, Nikhil}, Booktitle = {Proc. ACM Symp. Theory of Computing}, Year = {2013}, Pages = {755--764}, Owner = {yhli}, Timestamp = {2014.03.18} } @Conference{Lee2006, Title = {Semi-Supervised Learning in Reproducing Kernel Hilbert Spaces Using Local Invariances}, Author = {Lee, Zhang and Teh}, Booktitle = {Submitted to the 19th Annual Conference on Learning Theory}, Year = {2006}, File = {LeeZhangTeh06SemiSup.pdf:Statistical Learning/Semi-supervised/LeeZhangTeh06SemiSup.pdf:PDF}, Owner = {luca}, Timestamp = {2007.02.21} } @Article{Lefkimmiatis2012, Title = {{H}essian-{B}ased {N}orm {R}egularization for {I}mage {R}estoration with {B}iomedical {A}pplications}, Author = {S. Lefkimmiatis and A. Bourquard and M. Unser}, Journal = {IEEE Trans. Image Proc.}, Year = {2012}, Number = {3}, Pages = {983--995}, Volume = {21}, Owner = {quoctd}, Timestamp = {2013.12.19} } @Article{Lefkimmiatis2013, Title = {{P}oisson {I}mage {R}econstruction with {H}essian {S}chatten-{N}orm {R}egularization}, Author = {S. Lefkimmiatis and M. Unser}, Journal = {IEEE Trans. Image Proc.}, Year = {2013}, Number = {11}, Pages = {4314--4327}, Volume = {22}, Owner = {quoctd}, Timestamp = {2013.12.19} } @Article{Lefkimmiatis2013a, Title = {{H}essian {S}chatten-{N}orm {R}egularization for {L}inear {I}nverse {P}roblems}, Author = {S. Lefkimmiatis and J.P. Ward and M. Unser}, Journal = {IEEE Trans. Image Proc.}, Year = {2013}, Number = {5}, Pages = {1873--1888}, Volume = {22}, Owner = {quoctd}, Timestamp = {2013.12.19} } @Book{Lehmann1998, Title = {Theory of Point Estimation}, Author = {Lehmann, E. L. and Casella, George}, Publisher = {Springer-Verl.}, Year = {1998}, Address = {New York, NY}, Owner = {yhli}, Timestamp = {2014.06.18} } @TechReport{Leibfritz2004, Title = {{COMP}leib: {C}onstraint matrix optimization problem library - a collection of test examples for nonlinear semidefinite programs, control system design and related problems}, Author = {F. Leibfritz}, Institution = {Dept. Math., Univ. Trier}, Year = {2004}, Address = {Trier, Germany}, Type = {Tech. Rep.}, File = {:Papers/Leibfritz2004.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Leibfritz2001, Title = {{A} {LMI}-based algorithm for designing suboptimal static $\mathcal{H}_2 / \mathcal{H}_{\infty}$ output feedback controllers}, Author = {F. Leibfritz}, Journal = {SIAM J. Control Opt.}, Year = {2001}, Number = {6}, Pages = {1711001735}, Volume = {39}, File = {:Papers/Leibfritz2001.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.06.06} } @TechReport{Leibfritz2003, Title = {Description of the benchmark examples in {COMP}leib 1.0}, Author = {F. Leibfritz and W. Lipinski}, Institution = {Dept. Math., Univ. Trier}, Year = {2003}, Address = {Trier, Germany}, Type = {Tech. Rep.}, File = {:Papers/Leibfritz2003.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @Article{Leibfritz2009, Title = {{A} successive {SDP-NSDP} approach to a robust optimization problem in finance}, Author = {F. Leibfritz and J.H. Maruhn}, Journal = {Comp. Opt. Apps.}, Year = {2009}, Number = {3}, Pages = {443--466}, Volume = {44}, File = {:Papers/Leibfritz2009.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.06.06} } @Article{Leibfritz2003a, Title = {Trust region methods for solving the optimal output feedback design problem}, Author = {F. Leibfritz and E.M.E. Mostafa}, Journal = {Int. J. Control}, Year = {2003}, Number = {5}, Pages = {501--519}, Volume = {76}, File = {:Papers/Leibfritz2003a.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.06.06} } @Article{Leibfritz2002, Title = {{A}n {I}nterior {P}oint {C}onstrained {T}rust {R}egion {M}ethod for a {S}pecial {C}lass of {N}onlinear {S}emidefinite {P}rogramming {P}roblems}, Author = {F. Leibfritz and E.M.E. Mostafa}, Journal = {{SIAM} J. Opt.}, Year = {2002}, Number = {4}, Pages = { 1048-1074}, Volume = {12}, Keywords = {interior point semidefinite optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lein2007, Title = {Genome-wide atlas of gene expression in the adult mouse brain}, Author = {Lein, E. and Hawrylycz, M. and Ao, N. and Ayres, M. and Bensinger, A. and Bernard, A. and Boe, A. and Boguski, M. and Brockway, K. and Byrnes, E. and others}, Journal = {Nature}, Year = {2007}, Number = {7124}, Pages = {168--176}, Volume = {445}, Owner = {jmscarlett}, Publisher = {Nature Publishing Group}, Timestamp = {2014.11.25} } @Book{Leineweber1999, Title = {{E}fficient reduced {SQP} methods for the optimization of chemical processes described by large sparse {DAE} models}, Author = {Leineweber, D.B.}, Publisher = {VDI Verlag}, Year = {1999}, Address = {D\"usseldorf}, Series = {Fortschritt-Berichte VDI Reihe 3, Verfahrens\-technik}, Volume = {613}, File = {Leineweber1999.pdf:Leineweber1999.pdf:PDF}, Keywords = {agbock SQP multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Leineweber1996, Title = {{T}he theory of {MUSCOD} in a nutshell}, Author = {Leineweber, D.B.}, Institution = {Universit\"at Heidelberg}, Year = {1996}, Number = {96-19}, Type = {IWR-Pre\-print}, File = {Leineweber1996.pdf:Leineweber1996.pdf:PDF}, Keywords = {agbock SQP multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @MastersThesis{Leineweber1995, Title = {{A}nalyse und {R}estrukturierung eines {V}erfahrens zur direkten {L}\"osung von {O}ptimal-{S}teuerungsproblemen}, Author = {Leineweber, D.B.}, School = {Universit\"at Heidelberg}, Year = {1995}, File = {Leineweber1995.pdf:Leineweber1995.pdf:PDF}, Keywords = {agbock SQP multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Leineweber1997, Title = {{F}ast direct me\-thods for real-time optimization of chemical processes}, Author = {Leineweber, D.B. and Bock, H.G. and Schl\"oder, J.P.}, Booktitle = {Proc. IMACS World Congress on Scientific Computation, Modelling and Applied Mathematics}, Year = {1997}, Address = {Berlin}, Publisher = {Wissenschaft- und {T}echnik-Verlag}, Keywords = {agbock SQP multiple shooting optimal control realtime chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Leineweber1996a, Title = {{LIBLAC} -- structured data types and basic operations for numerical linear algebra in an {ANSI} {C}/{F}ortran 77 environment.}, Author = {D.B. Leineweber and J.A. Jost}, Institution = {Universit\"at Heidelberg}, Year = {1996}, Address = {Heidelberg}, Number = {96-56}, Type = {IWR-Pre\-print}, File = {Leineweber1996a.pdf:Leineweber1996a.pdf:PDF}, Keywords = {agbock computation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Leineweber2003a, Title = {{A}n {E}fficient {M}ultiple {S}hooting {B}ased {R}educed {SQP} {S}trategy for {L}arge-{S}cale {D}ynamic {P}rocess {O}ptimization. {P}art {II}: {S}oftware {A}spects and {A}pplications}, Author = {D.B. Leineweber and A.A.S. Sch\"afer and H.G. Bock and J.P. Schl\"oder}, Journal = {Comp. Chem. Eng.}, Year = {2003}, Pages = {167--174}, Volume = {27}, File = {:Leineweber2003a.pdf:PDF}, Keywords = {agbock SQP multiple shooting optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InCollection{Lemarechal2001, Title = {Lagrangian Relaxation}, Author = {Lemar\'{e}chal, C.}, Booktitle = {Computational Combinatorial Optimization}, Publisher = {Springer Berlin / Heidelberg}, Year = {2001}, Editor = {J\"{u}nger, Michael and Naddef, Denis}, Note = {10.1007/3-540-45586-8\_4}, Pages = {112-156}, Series = {Lecture Notes in Computer Science}, Volume = {2241}, Affiliation = {Inria 655 avenue de l’Europe 38334 Montbonnot Saint Ismier France}, ISBN = {978-3-540-42877-0}, Keyword = {Computer Science}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://dx.doi.org/10.1007/3-540-45586-8_4} } @Article{Lemarechal1997, Title = {Practical aspects of the {M}oreau-{Y}osida regularization: Theoretical preliminaries}, Author = {Lemar\'{e}chal, Claude and Sagastiz\'{a}bal, Claudia}, Journal = {SIAM J. Opt.}, Year = {1997}, Number = {2}, Pages = {367--385}, Volume = {7}, Owner = {yhli}, Timestamp = {2014.02.14} } @Article{Lemarechal1995, Title = {New variants of bundle methods}, Author = {C. Lemarechal and A Nemirovskii and Y Nesterov}, Journal = {Math. Program.}, Year = {1995}, Pages = {111-147}, Volume = {69}, Owner = {quoctd}, Timestamp = {2014.04.08} } @Article{Lenoir2007, Title = {Accelerating convergence of a separable augmented {L}agrangian algorithm}, Author = {A. Lenoir and P. Mahey}, Journal = {Tech. Report., LIMOS/RR-07-14}, Year = {2007}, Pages = {1--34}, Owner = {quoctd}, Timestamp = {2012.05.23} } @Article{Lenzen2013, Title = {A class of quasi-variational inequalities for adaptive image denoising and decomposition}, Author = {F. Lenzen and F. Becker and J. Lellmann and S. Petra and C. Schn\"{o}rr}, Journal = {Comp. Opt. Apps.}, Year = {2013}, Pages = {1--28}, Volume = {xx}, File = {:Papers/Lenzen2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @Electronic{Lewis2008, Title = {A proximal method for composite minimization}, Author = {A. S. Lewis and S. J. Wright}, Url = {http://arxiv.org/abs/0812.0423}, Year = {2008}, Owner = {quoctd}, Timestamp = {2012.04.07} } @InProceedings{Lewis1993, Title = {Distributed memory matrix-vector multiplication and conjugate gradient algorithms}, Author = {Lewis, J.G. and van de Geijn, R.A.}, Booktitle = {Supercomputing '93. Proceedings}, Year = {1993}, Month = {nov.}, Pages = { 484 - 492}, Doi = {10.1109/SUPERC.1993.1263496}, ISSN = {1063-9535}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Li2007, Title = {Network neighborhood analysis with the multi-node topological overlap measure.}, Author = {Ai Li and Steve Horvath}, Journal = {Bioinformatics}, Year = {2007}, Month = {Jan}, Number = {2}, Pages = {222--231}, Volume = {23}, Abstract = {MOTIVATION: The goal of neighborhood analysis is to find a set of genes (the neighborhood) that is similar to an initial 'seed' set of genes. Neighborhood analysis methods for network data are important in systems biology. If individual network connections are susceptible to noise, it can be advantageous to define neighborhoods on the basis of a robust interconnectedness measure, e.g. the topological overlap measure. Since the use of multiple nodes in the seed set may lead to more informative neighborhoods, it can be advantageous to define multi-node similarity measures. RESULTS: The pairwise topological overlap measure is generalized to multiple network nodes and subsequently used in a recursive neighborhood construction method. A local permutation scheme is used to determine the neighborhood size. Using four network applications and a simulated example, we provide empirical evidence that the resulting neighborhoods are biologically meaningful, e.g. we use neighborhood analysis to identify brain cancer related genes. AVAILABILITY: An executable Windows program and tutorial for multi-node topological overlap measure (MTOM) based analysis can be downloaded from the webpage (http://www.genetics.ucla.edu/labs/horvath/MTOM/).}, Doi = {10.1093/bioinformatics/btl581}, File = {BIO\\Li07NetworkNeighborhood.pdf:BIO\\Li07NetworkNeighborhood.pdf:PDF}, Owner = {BaldaZen}, Pii = {btl581}, Pmid = {17110366}, Timestamp = {2007.02.07}, Url = {http://dx.doi.org/10.1093/bioinformatics/btl581} } @Article{Li1986, Title = {Asymptotic optimality of {$C_L$} and generalized cross-validation in ridge regression with application to spline smoothing}, Author = {Li, Ker-Chau}, Journal = {Ann. Stats.}, Year = {1986}, Number = {3}, Pages = {1101--1112}, Volume = {14}, Owner = {yhli}, Timestamp = {2014.07.09} } @Article{Li1985, Title = {From {S}tein's unbiased risk estimates to the method of generalized cross validation}, Author = {Li, Ker-Chau}, Journal = {Ann. Stats.}, Year = {1985}, Number = {4}, Pages = {1352--1377}, Volume = {13}, Owner = {yhli}, Timestamp = {2014.07.04} } @Article{Li2004a, Title = {Statistical modeling of complex backgrounds for foreground object detection}, Author = {Li, Liyuan and Huang, Weimin and Gu, Irene Yu-Hua and Tian, Qi}, Journal = {IEEE Trans. Image Proc.}, Year = {2004}, Number = {11}, Pages = {1459--1472}, Volume = {13}, Owner = {jmscarlett}, Publisher = {IEEE}, Timestamp = {2014.11.25} } @Article{Li2010, Title = {An inexact interior point method for l 1-regularized sparse covariance selection}, Author = {Li, L. and Toh, K.C.}, Journal = {Math. Prog. Comp.}, Year = {2010}, Number = {3}, Pages = {291--315}, Volume = {2}, Owner = {quoctd}, Publisher = {Springer}, Timestamp = {2013.01.10} } @Article{Li1990, Title = {{N}ewton-{T}ype {C}ontrollers for {C}onstrained {N}onlinear {P}rocesses with {U}ncertainty}, Author = {W.C. Li and L.T. Biegler}, Journal = {Ind. Eng. Chem. Res.}, Year = {1990}, Pages = {1647--1657}, Volume = {29}, Keywords = {optimal control robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Li1989, Title = {{M}ultistep, {N}ewton-{T}ype {C}ontrol {S}trategies for {C}onstrained {N}onlinear {P}rocesses}, Author = {W.C. Li and L.T. Biegler}, Journal = {Chem. Eng. Res. Des.}, Year = {1989}, Pages = {562--577}, Volume = {67}, File = {Li1989.pdf:Li1989.pdf:PDF}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Li1990a, Title = {{A} {C}onstrained {P}seudo-{N}ewton {C}ontrol {S}trategy for {N}onlinear {S}ystems}, Author = {W.C. Li and L.T. Biegler and C.G. Economou and M. Morari}, Journal = {Comp. Chem. Eng.}, Year = {1990}, Number = {451-468}, Volume = {14(4/5)}, File = {Li1990a.pdf:Li1990a.pdf:PDF}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Li2014a, Title = {Sparsistency of $\ell_1$-regularized {$M$}-estimators}, Author = {Li, Yen-Huan and Ravikumar, Pradeep and Cevher, Volkan}, Institution = {{\'{E}}cole Polytechnique F\'{e}d\'{e}rale de Lausanne}, Year = {2014}, Note = {{EPFL-REPORT-199452}}, Owner = {yhli}, Timestamp = {2014.08.22} } @Article{Li2014b, Title = {Sparsistency of {$\ell_1$}-regularized {$M$}-estimators}, Author = {Li, Yen-Huan and Scarlett, Jonathan and Ravikumar, Pradeep and Cevher, Volkan}, Year = {2014}, Note = {arXiv:1410.7605 [math.ST]}, Owner = {yhli}, Timestamp = {2014.11.13} } @InCollection{Liang2012, Title = {Repairing sparse low-rank texture}, Author = {Liang, Xiao and Ren, Xiang and Zhang, Zhengdong and Ma, Yi}, Booktitle = {Computer Vision ECCV}, Publisher = {Springer}, Year = {2012}, Pages = {482--495}, File = {liang2012repairing.pdf:liang2012repairing.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Liao2003, Title = {Network component analysis: reconstruction of regulatory signals in biological systems.}, Author = {James C Liao and Riccardo Boscolo and Young-Lyeol Yang and Linh My Tran and Chiara Sabatti and Vwani P Roychowdhury}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2003}, Month = {Dec}, Number = {26}, Pages = {15522--15527}, Volume = {100}, Abstract = {High-dimensional data sets generated by high-throughput technologies, such as DNA microarray, are often the outputs of complex networked systems driven by hidden regulatory signals. Traditional statistical methods for computing low-dimensional or hidden representations of these data sets, such as principal component analysis and independent component analysis, ignore the underlying network structures and provide decompositions based purely on a priori statistical constraints on the computed component signals. The resulting decomposition thus provides a phenomenological model for the observed data and does not necessarily contain physically or biologically meaningful signals. Here, we develop a method, called network component analysis, for uncovering hidden regulatory signals from outputs of networked systems, when only a partial knowledge of the underlying network topology is available. The a priori network structure information is first tested for compliance with a set of identifiability criteria. For networks that satisfy the criteria, the signals from the regulatory nodes and their strengths of influence on each output node can be faithfully reconstructed. This method is first validated experimentally by using the absorbance spectra of a network of various hemoglobin species. The method is then applied to microarray data generated from yeast Saccharamyces cerevisiae and the activities of various transcription factors during cell cycle are reconstructed by using recently discovered connectivity information for the underlying transcriptional regulatory networks.}, Doi = {10.1073/pnas.2136632100}, File = {Liao et al 2003.pdf:BIO/Liao et al 2003.pdf:PDF}, Keywords = {Biology; Gene Expression Regulation; Hemoglobins; Image Processing, Computer-Assisted; Models, Genetic; Nerve Net; Oligonucleotide Array Sequence Analysis; Reproducibility of Results; Signal Transduction}, Owner = {luca}, Pii = {2136632100}, Pmid = {14673099}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1073/pnas.2136632100} } @Conference{Liberati, Title = {CLASSIFICAZIONE AUTOMATICA E SELEZIONE DELLE VARIABILI SALIENTI MEDIANTE ANALISI MULTIVARIATA DI DATI}, Author = {Liberati}, File = {Liberati.pdf:BIO/Liberati.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.25} } @Article{Liebman1992, Title = {{E}fficient {D}ata {R}econciliation and {E}stimation for {D}ynamic {P}rocesses {U}sing {N}onlinear {P}rogramming {T}echniques}, Author = {Liebman, M.J. and Edgar, T.F. and Lasdon, L.S.}, Journal = {Comp. Chem. Eng.}, Year = {1992}, Number = {10/11}, Pages = {963--986}, Volume = {16}, Keywords = {parameter estimation}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lin2007, Title = {Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization.}, Author = {Chung-Chih Lin and Yuh-Show Tsai and Yu-Shi Lin and Tai-Yu Chiu and Chia-Cheng Hsiung and May-I. Lee and Jeremy C Simpson and Chun-Nan Hsu}, Journal = {Bioinformatics}, Year = {2007}, Month = {Dec}, Number = {24}, Pages = {3374--3381}, Volume = {23}, Abstract = {MOTIVATION: Determining locations of protein expression is essential to understand protein function. Advances in green fluorescence protein (GFP) fusion proteins and automated fluorescence microscopy allow for rapid acquisition of large collections of protein localization images. Recognition of these cell images requires an automated image analysis system. Approaches taken by previous work concentrated on designing a set of optimal features and then applying standard machine-learning algorithms. In fact, trends of recent advances in machine learning and computer vision can be applied to improve the performance. One trend is the advances in multiclass learning with error-correcting output codes (ECOC). Another trend is the use of a large number of weak detectors with boosting for detecting objects in images of real-world scenes. RESULTS: We take advantage of these advances to propose a new learning algorithm, AdaBoost.ERC, coupled with weak and strong detectors, to improve the performance of automatic recognition of protein subcellular locations in cell images. We prepared two image data sets of CHO and Vero cells and downloaded a HeLa cell image data set in the public domain to evaluate our new method. We show that AdaBoost.ERC outperforms other AdaBoost extensions. We demonstrate the benefit of weak detectors by showing significant performance improvements over classifiers using only strong detectors. We also empirically test our method's capability of generalizing to heterogeneous image collections. Compared with previous work, our method performs reasonably well for the HeLa cell images. AVAILABILITY: CHO and Vero cell images, their corresponding feature sets (SSLF and WSLF), our new learning algorithm, AdaBoost.ERC, and Supplementary Material are available at http://aiia.iis.sinica.edu.tw/}, Doi = {10.1093/bioinformatics/btm497}, File = {Lin07Boosting.pdf:/home/baldazen/Desktop/Scienza/VC/Lin07Boosting.pdf:PDF}, Keywords = {Algorithms; Artificial Intelligence; Image Interpretation, Computer-Assisted; Microscopy, Fluorescence; Pattern Recognition, Automated; Proteins; Subcellular Fractions}, Owner = {baldazen}, Pii = {btm497}, Pmid = {17956879}, Timestamp = {2008.01.31}, Url = {http://dx.doi.org/10.1093/bioinformatics/btm497} } @Article{Lin2013, Title = {An Adaptive Accelerated Proximal Gradient Method and its Homotopy Continuation for Sparse Optimization}, Author = {Lin, Qihang and Xiao, Lin}, Year = {2013}, File = {lin2013adaptive.pdf:Optimization/lin2013adaptive.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Lin1992, Title = {{C}omplete {D}ecomposition {A}lgorithm for {N}onconvex {S}eparable {O}ptimization {P}roblems and {A}pplications}, Author = {S.Y. Lin}, Journal = {Automatica}, Year = {1992}, Number = {6}, Pages = {1249--1254}, Volume = {28}, Owner = {quoctd}, Timestamp = {2013.08.24} } @Article{Lin2010, Title = {The augmented lagrange multiplier method for exact recovery of corrupted low-rank matrices}, Author = {Lin, Zhouchen and Chen, Minming and Ma, Yi}, Journal = {arXiv preprint arXiv:1009.5055}, Year = {2010}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Lin2009, Title = {{T}he {A}ugmented {L}agrange {M}ultiplier {M}ethod for {E}xact {R}ecovery of {C}orrupted {L}ow-{R}ank {M}atrices}, Author = {Z. Lin and M. Chen and L. Wu and Y. Ma}, Journal = {UIUC Technical Report UILU-ENG-09-2215}, Year = {2009}, Owner = {quoctd}, Timestamp = {2014.04.22} } @Article{Lin2009a, Title = {Fast convex optimization algorithms for exact recovery of a corrupted low-rank matrix}, Author = {Lin, Z. and Ganesh, A. and Wright, J. and Wu, L. and Chen, M. and Ma, Y.}, Journal = {Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP)}, Year = {2009}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Lincoln2002, Title = {{S}uboptimal dynamic programming with error bounds}, Author = {B. Lincoln and A. Rantzer}, Booktitle = {Proc. Conf. Decision and Control}, Year = {2002}, Keywords = {optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lions2001, Title = {Résolution d'EDP par un schéma en temps «pararéel »}, Author = {Jacques-Louis Lions and Yvon Maday and Gabriel Turinici}, Journal = {Comptes Rendus de l'Académie des Sciences - Series I}, Year = {2001}, Number = {7}, Pages = {661 - 668}, Volume = {332}, Doi = {10.1016/S0764-4442(00)01793-6}, ISSN = {0764-4442}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0764444200017936} } @Article{Lions1979, Title = {Splitting algorithms for the sum of two nonlinear operators}, Author = {P. L. Lions and B. Mercier}, Journal = {SIAM J. Numer. Anal.}, Year = {1979}, Pages = {964--979}, Volume = {16}, Owner = {quoctd}, Timestamp = {2014.07.14} } @Book{Lipschutz1999, Title = {{L}ineare {A}lgebra. {S}chaum's {\"U}berblicke und {A}ufgaben}, Author = {S. Lipschutz}, Publisher = {McGraw-Hill Germany/Hanser Fachbuchverlag}, Year = {1999}, Address = {M\"unchen}, Edition = {2}, Note = {Enth\"alt viele sch\"one Beispiele, erkl\"art alles sch\"on ausf\"uhrlich. Auch gut zur Nacharbeitung des Stoffes in Linearer Algebra geeignet.}, Keywords = {textbook}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Liu2009, Title = {Multi-output regression on the output manifold}, Author = {Guangcan Liu and Zhouchen Lin and Yong Yu}, Journal = {Pattern Recognition}, Year = {2009}, Number = {11}, Pages = {2737 - 2743}, Volume = {42}, Doi = {DOI: 10.1016/j.patcog.2009.05.001}, File = {:Statistical Learning/Manifold/liu09multimanifold.pdf:PDF}, ISSN = {0031-3203}, Keywords = {Regression analysis}, Owner = {baldassarre}, Timestamp = {2009.07.15}, Url = {http://www.sciencedirect.com/science/article/B6V14-4W8VVYM-1/2/c5167946f20b7183b2a249ab278127cc} } @Article{Liu2013, Title = {Modified subspace {B}arzilai-{B}orwein gradient method for non-negative matrix factorization}, Author = {H. Liu and X. Li}, Journal = {Comp. Opt. Apps.}, Year = {2013}, Pages = {1--24}, Volume = {xx}, File = {:E-Books/Papers/Liu2013.pdf:PDF}, Owner = {quoctd}, Timestamp = {2013.01.14} } @InProceedings{Liu2010, Title = {An efficient algorithm for a class of fused lasso problems}, Author = {Liu, J. and Yuan, L. and Ye, J.}, Booktitle = {ACM SIGKDD Conference on Knowledge Discovery and Data Mining}, Year = {2010}, File = {liu2010efficient.pdf:Statistical Learning\\SPARSITY\\liu2010efficient.pdf:PDF}, Owner = {BaldaZen}, Timestamp = {2012.02.24} } @Article{Liu2012, Title = {Ensemble sparse classification of Alzheimer's disease}, Author = {Manhua Liu and Daoqiang Zhang and Dinggang Shen}, Journal = {NeuroImage}, Year = {2012}, Number = {2}, Pages = {1106 - 1116}, Volume = {60}, Doi = {10.1016/j.neuroimage.2012.01.055}, File = {liu2012ensemble.pdf:NEURO\\liu2012ensemble.pdf:PDF}, ISSN = {1053-8119}, Keywords = {AD diagnosis}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://www.sciencedirect.com/science/article/pii/S1053811912000729} } @Article{Liu2005, Title = {A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.}, Author = {Xuejun Liu and Marta Milo and Neil D Lawrence and Magnus Rattray}, Journal = {Bioinformatics}, Year = {2005}, Month = {Sep}, Number = {18}, Pages = {3637--3644}, Volume = {21}, Abstract = {MOTIVATION: Affymetrix GeneChip arrays are currently the most widely used microarray technology. Many summarization methods have been developed to provide gene expression levels from Affymetrix probe-level data. Most of the currently popular methods do not provide a measure of uncertainty for the expression level of each gene. The use of probabilistic models can overcome this limitation. A full hierarchical Bayesian approach requires the use of computationally intensive MCMC methods that are impractical for large datasets. An alternative computationally efficient probabilistic model, mgMOS, uses Gamma distributions to model specific and non-specific binding with a latent variable to capture variations in probe affinity. Although promising, the main limitations of this model are that it does not use information from multiple chips and does not account for specific binding to the mismatch (MM) probes. RESULTS: We extend mgMOS to model the binding affinity of probe-pairs across multiple chips and to capture the effect of specific binding to MM probes. The new model, multi-mgMOS, provides improved accuracy, as demonstrated on some bench-mark datasets and a real time-course dataset, and is much more computationally efficient than a competing hierarchical Bayesian approach that requires MCMC sampling. We demonstrate how the probabilistic model can be used to estimate credibility intervals for expression levels and their log-ratios between conditions. AVAILABILITY: Both mgMOS and the new model multi-mgMOS have been implemented in an R package, which is available at http://www.bioinf.man.ac.uk/resources/puma.}, Doi = {10.1093/bioinformatics/bti583}, File = {A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.pdf:BIO/A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.pdf:PDF}, Keywords = {Algorithms; Animals; Bayes Theorem; Computational Biology; Computer Simulation; Gene Expression Profiling; Gene Expression Reg; Humans; Models, Genetic; Models, Statistical; Monte Carlo Method; Oligonucleotide Array Sequence Analysis; Probability; Reproducibility of Results; Sensitivity and Specificity; Software; Statistics; Time Factors; ulation}, Owner = {luca}, Pii = {bti583}, Pmid = {16020470}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1093/bioinformatics/bti583} } @Article{LoGerfo2008, Title = {Spectral Algorithms for Supervised Learning}, Author = {Lo Gerfo, L. and Rosasco, L. and Odone, F. and De Vito, E. and Verri A.}, Journal = {Neural Comp.}, Year = {2008}, Number = {7}, Pages = {1873--1897}, Volume = {20}, File = {LoGerfo08Spectral.pdf:Statistical Learning/LoGerfo08Spectral.pdf:PDF}, Owner = {baldazen}, Publisher = {MIT Press}, Timestamp = {2008.01.25} } @Article{Lobo1998, Title = {Applications of Second-Order Cone Programming}, Author = {M. Lobo and L. Vandenberghe and S. Boyd, and H. Lebret}, Journal = {Lin. Alg. Apps.}, Year = {1998}, Pages = {193--228}, Volume = {284}, File = {:Papers/Lobo1998.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @Book{Lockett1986, Title = {{D}istillation {T}ray fundamentals}, Author = {Lockett, M.J.}, Publisher = {Cambridge University Press}, Year = {1986}, Address = {Cambridge}, Keywords = {chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lockhart2014, Title = {A significance test for the lasso}, Author = {Lockhart, Richard and Taylor, Jonathan and Tibshirani, Ryan J. and Tibshirani, Robert}, Journal = {Ann. Stats.}, Year = {2014}, Number = {2}, Pages = {413--468}, Volume = {42}, Owner = {yhli}, Timestamp = {2014.07.28} } @Article{Logist2012, Title = {Multi-objective optimal control of chemical processes using ACADO toolkit}, Author = {F. Logist and M. Vallerio and B. Houska and M. Diehl and J. Van Impe}, Journal = {Comp. Chem. Eng.}, Year = {2012}, Number = {0}, Pages = {191 - 199}, Volume = {37}, Doi = {10.1016/j.compchemeng.2011.11.002}, File = {logist2012.pdf:logist2012.pdf:PDF}, ISSN = {0098-1354}, Keywords = {Multi-objective optimisation}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S0098135411003231} } @Article{Logsdon1993, Title = {{A}ccurate {D}etermination of {O}ptimal {R}eflux {P}olicies for the {M}aximum {D}istillate {P}roblem in {B}atch {D}istillation}, Author = {Logsdon, J.S. and L.T. Biegler}, Journal = {I \& {EC} {R}esearch}, Year = {1993}, Number = {32}, Pages = {692}, Volume = {4}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Logsdon1990, Title = {{O}n the {S}imultaneous {O}ptimal {D}esign and {O}peration of {B}atch {D}istillation {C}olumns}, Author = {Logsdon, J.S. and U.M. Diwekar and L.T. Biegler}, Journal = {Trans. Chem. Eng.}, Year = {1990}, Pages = {434}, Volume = {68}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Loh2013, Title = {Structure estimation for discrete graphical models: Generalized covariance matrices and their inverses}, Author = {Loh, P. and Wainwright, M. and others}, Journal = {Ann. Stats..}, Year = {2013}, Number = {6}, Pages = {3022--3049}, Volume = {41}, Owner = {jmscarlett}, Publisher = {Institute of Mathematical Statistics}, Timestamp = {2014.11.25} } @Article{Loh2013a, Title = {Regularized M-estimators with nonconvexity: Statistical and algorithmic theory for local optima}, Author = {Loh, Po-Ling and Wainwright, Martin J}, Journal = {arXiv preprint arXiv:1305.2436}, Year = {2013}, File = {loh2013regularized.pdf:loh2013regularized.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Lootsma1988, Title = {State-of-the-art in parallel nonlinear optimization}, Author = {F. A. Lootsma and K. M. Ragsdell}, Journal = {Parallel Computing}, Year = {1988}, Number = {2}, Pages = {133-155}, Volume = {6}, Doi = {DOI: 10.1016/0167-8191(88)90080-4}, ISSN = {0167-8191}, Keywords = {Unconstrained optimization, distributed optimization}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/B6V12-4903S2K-1K/2/b1a5c45ecc9dacb1938c6be767ceca29} } @InCollection{Lops2011, Title = {Content-based Recommender Systems: State of the Art and Trends}, Author = {Pasquale Lops and Marco de Gemmis and Giovanni Semeraro}, Booktitle = {Recommender Systems Handbook}, Publisher = {Springer US}, Year = {2011}, ISBN = {978-0-387-85819-7}, Language = {English}, Owner = {jmscarlett} } @Article{Loris2009, Title = {On the performance of algorithms for the minimization of $\ell_1$-penalized functionals}, Author = {Ignace Loris}, Journal = {Inverse Problems}, Year = {2009}, Number = {3}, Pages = {035008}, Volume = {25}, Abstract = {The problem of assessing the performance of algorithms used for the minimization of an â„“ 1 -penalized least-squares functional, for a range of penalty parameters, is investigated. A criterion that uses the idea of 'approximation isochrones' is introduced. Five different iterative minimization algorithms are tested and compared, as well as two warm-start strategies. Both well-conditioned and ill-conditioned problems are used in the comparison, and the contrast between these two categories is highlighted.}, File = {loris2009performance.pdf:Statistical Learning\\SPARSITY\\loris2009performance.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://stacks.iop.org/0266-5611/25/i=3/a=035008} } @Article{Loris2011, Title = {On a generalization of the iterative soft-thresholding algorithm for the case of non-separable penalty}, Author = {Ignace Loris and Caroline Verhoeven}, Journal = {Inverse Problems}, Year = {2011}, Pages = {125007}, Volume = {27}, Doi = {http://dx.doi.org/10.1088/0266-5611/27/12/125007}, File = {loris2011generalization.pdf:Optimization\\loris2011generalization.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25}, Url = {http://arxiv.org/abs/1104.1087} } @InProceedings{Lounici2009, Title = {Taking advantage of sparsity in multi-task learning.}, Author = {Lounici, K. and Pontil, M. and Tsybakov, A.B. and van de Geer, S.A.}, Booktitle = {Proc. Conf. Learn. Theory (COLT)}, Year = {2009}, File = {lounici2009sparsitymtl.pdf:Statistical Learning/Multitask/lounici2009sparsitymtl.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2010.01.05} } @InCollection{Lovasz1983, Title = {Submodular functions and convexity}, Author = {Lov{\'a}sz, L.}, Booktitle = {Math. Prog. The State of the Art}, Publisher = {Springer}, Year = {1983}, Pages = {235--257}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Love1973, Title = {A dual decomposition method for minimizing transportation costs in multifacility location problems}, Author = {R.F. Love and S.A. Kraemer}, Journal = {Transportation Sci.}, Year = {1973}, Pages = {297--316}, Volume = {7}, File = {:Papers/Love1973.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @InProceedings{Low2006, Title = {{C}ross-{L}ayer {C}ongestion {C}ontrol, {R}outing and {S}cheduling {D}esign in {A}d {H}oc {W}ireless {N}etworks}, Author = {Low, S. H., Chiang, M. and Doyle, J. C.}, Booktitle = {INFOCOM 2006 - 25th IEEE International Conference on Computer Communications}, Year = {2006}, Month = {April}, Pages = {1--13}, File = {:Papers/Low2006.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.06.07} } @Article{Lowe2004, Title = {Distinctive Image Features from Scale-Invariant Keypoints}, Author = {Lowe, D.}, Journal = {Int. J. Comp. Vision}, Year = {2004}, Pages = {91-110}, Volume = {60}, Owner = {baldassarre}, Timestamp = {2010.01.29} } @Article{Lowitzsch2005, Title = {A density theorem for matrix-valued radial basis functions}, Author = {Lowitzsch, S.}, Journal = {Numerical Algorithms}, Year = {2005}, Number = {1}, Pages = {253--256}, Volume = {39}, File = {lowitzsch2005density.pdf:Statistical Learning/Vector-valued/lowitzsch2005density.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Lu2010, Title = {Adaptive first-order methods for general sparse inverse covariance selection}, Author = {Lu, Z.}, Journal = {SIAM Journal on Matrix Anal. and Apps.}, Year = {2010}, Number = {4}, Pages = {2000--2016}, Volume = {31}, Owner = {quoctd}, Publisher = {SIAM}, Timestamp = {2013.01.10} } @Article{Lu2009, Title = {Smooth optimization approach for sparse covariance selection}, Author = {Z. Lu}, Journal = {SIAM J. Opt.}, Year = {2009}, Number = {4}, Pages = {1807--1827}, Volume = {19}, Owner = {quoctd}, Timestamp = {2013.10.25} } @Article{Lu2012, Title = {An augmented {L}agrangian approach for sparse principal component analysis}, Author = {Z. Lu and Y. Zhang}, Journal = {Math. Program.}, Year = {2012}, Pages = {149--193}, Volume = {135}, File = {:Papers/Lu2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.11.01} } @Article{Lucet2010, Title = {What Shape Is Your Conjugate? A Survey of Computational Convex Analysis and Its Applications}, Author = {Y. Lucet}, Journal = {SIAM Rev.}, Year = {2010}, Number = {3}, Pages = {505--542}, Volume = {52}, File = {:Papers/Lucet2010.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.26} } @TechReport{Lucia2012b, Title = {Stability Properties of Multi-Stage Robust Nonlinear Model Predictive Control}, Author = {S.~Lucia and S.~Engell}, Institution = {Process Dynamics and Operations Group, Technische Universit\"at Dortmund}, Year = {2012}, Owner = {quoctd}, Timestamp = {2013.08.23} } @TechReport{Lucia2013, Title = {Multi-stage Nonlinear Model Predictive Control Applied to a Semi-batch Polymerization Reactor under Uncertainty}, Author = {S.~Lucia and T.~Finkler and S.~Engell}, Institution = {Process Dynamics and Operations Group, Technische Universit\"at Dortmund}, Year = {2013}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lugosi2004, Title = {On the Bayes-risk consistency of regularized boosting methods}, Author = {Lugosi, G. and Vayatis, N.}, Journal = {Ann. Stats.}, Year = {2004}, Number = {1}, Pages = {30--55}, Volume = {32}, File = {lugosi2004bayesrisk.pdf:Statistical Learning/Classification/lugosi2004bayesrisk.pdf:PDF}, Owner = {baldassarre}, Publisher = {IMS INSTITUTE OF MATHEMATICAL STATISTICS}, Timestamp = {2010.01.08} } @Article{Luke2012, Title = {Prox-Regularity of Rank Constraint Sets and Implications for Algorithms}, Author = {Luke, D.R.}, Journal = {J. Math. Imag. Vis.}, Year = {2012}, Pages = {1-8}, Doi = {10.1007/s10851-012-0406-3}, File = {luke2012prox.pdf:Optimization/luke2012prox.pdf:PDF}, ISSN = {0924-9907}, Keywords = {Rank optimization; Rank constraint; Sparsity; Normal cone; Prox-regular; Constraint qualification; Projection operator; Method of alternating projections; Linear convergence; Superregularity}, Language = {English}, Owner = {jmscarlett}, Publisher = {Springer US}, Timestamp = {2014.11.25}, Url = {http://dx.doi.org/10.1007/s10851-012-0406-3} } @Article{Luna2012, Title = {A class of {D}antzig--{W}olfe type decomposition methods for variational inequality problems}, Author = {J.P. Luna and C. Sagastiz\'{a}bal and M. Solodov}, Journal = {Math. Program.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Luna2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Lustig2007, Title = {Sparse MRI: The application of compressed sensing for rapid MR imaging}, Author = {Lustig, M. and Donoho, D. and Pauly, J.}, Journal = {Mag. Reson. Med.}, Year = {2007}, Number = {6}, Pages = {1182--1195}, Volume = {58}, Owner = {jmscarlett}, Publisher = {Wiley Online Library}, Timestamp = {2014.11.25} } @Book{Luus2000, Title = {{I}terative {D}ynamic {P}rogramming}, Author = {Rein Luus}, Publisher = {CRC Press LLC}, Year = {2000}, Address = {Boca Raton, FL}, Note = {ISBN: 1584881488}, Keywords = {optimal control indirect methods}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Luxburg2004, Title = {A Compression Approach to Support Vector Model Selection}, Author = {Luxburg, Bousquet, Scholkopf}, Journal = {J. Mach. Learn. Res.}, Year = {2004}, Pages = {293-323}, Volume = {5}, File = {A Compression Approach to Support Vector Model Selection.pdf:Statistical Learning/A Compression Approach to Support Vector Model Selection.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Book{Luyben1992, Title = {{P}ractical distillation control}, Author = {W.L. Luyben}, Publisher = {McGraw-Hill}, Year = {1992}, Address = {New York}, Note = {ISBN 0-442-00601-2}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Luyben1990, Title = {{M}ulticomponent batch distillation. 2. {C}omparison of alternative slop handling and operating strategies}, Author = {W.L. Luyben}, Journal = {Ind. Eng. Chem. Res.}, Year = {1990}, Pages = {1915--1921}, Volume = {29}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Book{Luyben1990a, Title = {{P}rocess modeling, simulation, and control for chemical engineers}, Author = {W.L. Luyben}, Publisher = {McGraw-Hill}, Year = {1990}, Address = {New York}, Note = {ISBN 0-07-039159-9}, Keywords = {chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Luyben1988, Title = {{M}ulticomponent batch distillation. 1. {T}ernary systems with slop recycle}, Author = {W.L. Luyben}, Journal = {Ind. Eng. Chem. Res.}, Year = {1988}, Pages = {642--647}, Volume = {27}, Keywords = {optimal control chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lyapunov1907, Title = {{P}robl\'eme general de la stabilit\'e du mouvement}, Author = {M.A. Lyapunov}, Journal = {Ann. Fac. Sci. Toulouse Math.}, Year = {1907}, Pages = {pp. 203-474}, Volume = {5(9)}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Lygeros1999, Title = {Controllers for reachibility specifications for hybrid systems}, Author = {J.~Lygeros and C.~Tomlin and S.~Sastry}, Journal = {Automatica}, Year = {1999}, Pages = {pp. 349--370}, Volume = {35}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Mhamdi1996, Title = {{N}ewton-type {R}eceding {H}orizon {C}ontrol and {S}tate {E}stimation}, Author = {M{'}hamdi, A. and Helbig, A. and Abel, O. and Marquardt, W.}, Booktitle = {Proc. IFAC World Congress}, Year = {1996}, Address = {San Francisco}, Pages = {121--126}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Publishers = {Elsevier Science Inc.}, Timestamp = {2013.08.23} } @Article{Moennigmann2003, Title = {{S}teady {S}tate {P}rocess {O}ptimization with {G}uaranteed {R}obustness {S}tability and {F}easibility}, Author = {M. M\"onnigmann and W. Marquardt}, Journal = {{AIChE} Journal}, Year = {2003}, Number = {12}, Pages = {3110--3126}, Volume = {49}, Keywords = {optimal control chemistry robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{M2012, Title = {Alternating proximal gradient method for convex minimization}, Author = {S. Ma}, Journal = {Tech. Report.}, Year = {2012}, Pages = {xx}, Volume = {xx}, File = {:Papers/Ma2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Ma2011, Title = {Fixed point and Bregman iterative methods for matrix rank minimization}, Author = {Ma, S. and Goldfarb, D. and Chen, L.}, Journal = {Math. Prog.}, Year = {2011}, Number = {1}, Pages = {321--353}, Volume = {128}, File = {ma2011fixed.pdf:Optimization/ma2011fixed.pdf:PDF}, Owner = {jmscarlett}, Publisher = {Springer}, Timestamp = {2014.11.25} } @Article{Ma2013, Title = {Alternating direction methods for latent variable gaussian graphical model selection}, Author = {S. Ma and L. Xue and H. Zou}, Journal = {Neural Comp.}, Year = {2013}, Number = {8}, Pages = {2172--2198}, Volume = {25}, Owner = {quoctd}, Timestamp = {2014.06.10} } @InProceedings{Ma2008, Title = {An efficient algorithm for compressed MR imaging using total variation and wavelets}, Author = {Ma, S. and Yin, W. and Zhang, Y. and Chakraborty, A.}, Booktitle = {Comp. Vis. Pattern Recog. (CVPR)}, Year = {2008}, Organization = {IEEE}, Pages = {1--8}, File = {ma2008efficient.pdf:Optimization\\ma2008efficient.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @TechReport{Macedo2008, Title = {Learning Divergence-free and Curl-free Vector Fields with Matrix-valued Kernels}, Author = {Mac\^{e}do, I. and Castro, R.}, Institution = {Instituto Nacional de Matematica Pura e Aplicada}, Year = {2008}, File = {macedo08divcurlfree.pdf:Statistical Learning/Vector-valued/macedo08divcurlfree.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Book{Maciejowski1989, Title = {{M}ultivariable {F}eedback {D}esign}, Author = {J.M. Maciejowski}, Publisher = {Addison-Wesley}, Year = {1989}, Address = {Wokingham, GB}, Series = {Electronic Systems Engineering series}, Keywords = {optimal control NMPC}, Mlanguage = {E}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Madan2006, Title = {Distributed algorithms for maximum lifetime routing in wireless sensor networks}, Author = {Madan, R.}, Journal = {IEEE Trans. Wireless Comms.}, Year = {2006}, Number = {8}, Pages = {2185--2193}, Volume = {5}, Owner = {quoctd}, Timestamp = {2012.06.07} } @Article{Maday2002, Title = {A parareal in time procedure for the control of partial differential equations}, Author = {Yvon Maday and Gabriel Turinici}, Journal = {Comptes Rendus Mathematique}, Year = {2002}, Number = {4}, Pages = {387 - 392}, Volume = {335}, Doi = {10.1016/S1631-073X(02)02467-6}, ISSN = {1631-073X}, Owner = {quoctd}, Timestamp = {2013.08.23}, Url = {http://www.sciencedirect.com/science/article/pii/S1631073X02024676} } @Article{Maerkl2007, Title = {A systems approach to measuring the binding energy landscapes of transcription factors.}, Author = {Sebastian J Maerkl and Stephen R Quake}, Journal = {Science}, Year = {2007}, Month = {Jan}, Number = {5809}, Pages = {233--237}, Volume = {315}, Abstract = {A major goal of systems biology is to predict the function of biological networks. Although network topologies have been successfully determined in many cases, the quantitative parameters governing these networks generally have not. Measuring affinities of molecular interactions in high-throughput format remains problematic, especially for transient and low-affinity interactions. We describe a high-throughput microfluidic platform that measures such properties on the basis of mechanical trapping of molecular interactions. With this platform we characterized DNA binding energy landscapes for four eukaryotic transcription factors; these landscapes were used to test basic assumptions about transcription factor binding and to predict their in vivo function.}, Comment = {There is Supp Mat}, Doi = {10.1126/science.1131007}, File = {Maerkl07YeastTFs.pdf:BIO/Maerkl07YeastTFs.pdf:PDF}, Owner = {luca}, Pii = {315/5809/233}, Pmid = {17218526}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1126/science.1131007} } @MastersThesis{Magnani, Title = {Kernels, Frames and Neural Networks}, Author = {Magnani}, File = {magnani.pdf:Statistical Learning/magnani.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.26} } @Article{Magnanti1981, Title = {Accelerating Benders Decomposition: Algorithmic Enhancement and Model Selection Criteria}, Author = {T.L. Magnanti and R.T. Wong}, Journal = {Oper. Res.}, Year = {1981}, Number = {3}, Pages = {464--484}, Volume = {29}, File = {:Papers/Magnanti1981.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Magni2001, Title = {{A} stabilizing model-based predictive control for nonlinear systems}, Author = {L. Magni and G. {De Nicolao} and L. Magnani and R. Scattolini}, Journal = {Automatica}, Year = {2001}, Number = {9}, Pages = {1351--1362}, Volume = {37}, File = {Magni2001.pdf:Magni2001.pdf:PDF}, Keywords = {optimal control NMPC robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @InProceedings{Magni2002, Title = {{G}lobal stabilization of the inverted pendulum using model predictive control}, Author = {L. Magni and R. Scattolini and K. J. Astrom}, Booktitle = {IFAC World Congress}, Year = {2002}, Address = {Barcelona}, Keywords = {optimal control NMPC robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @PhdThesis{Mahn2002, Title = {{E}ntwicklung einer {M}ethode und {T}estumgebung f\"ur die {E}valuierung von gehobenen {R}egelungsstrategien f\"ur verfahrenstechnische {A}nlagen}, Author = {B. Mahn}, School = {Ruhr-Universit\"at Bochum}, Year = {2002}, Keywords = {optimal control NMPC robust}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Mahoney2011, Title = {Randomized algorithms for matrices and data}, Author = {Mahoney, Michael W}, Journal = {Found. Trends Mach. Learn.}, Year = {2011}, Number = {2}, Pages = {123--224}, Volume = {3}, Owner = {jmscarlett}, Publisher = {Now Publishers Inc.}, Timestamp = {2014.11.25} } @Article{Mairal2010, Title = {Online learning for matrix factorization and sparse coding}, Author = {Mairal, J. and Bach, F. and Ponce, J. and Sapiro, G.}, Journal = {J. Mach. Learn. Res.}, Year = {2010}, Number = {1}, Pages = {19--60}, Volume = {11}, File = {mairal2010matrixfactorization.pdf:Statistical Learning/mairal2010matrixfactorization.pdf:PDF}, Owner = {baldassarre}, Publisher = {Citeseer}, Timestamp = {2010.05.17} } @Article{Mairal2011, Title = {Convex and Network Flow Optimization for Structured Sparsity}, Author = {Mairal, J. and Jenatton, R. and Obozinski, G. and Bach, F.}, Journal = {J. Mach. Learn. Res.}, Year = {2011}, Pages = {2681-2720}, Volume = {12}, File = {mairal2011convex.pdf:Statistical Learning/SPARSITY/mairal2011convex.pdf:PDF}, Owner = {baldassarre}, Timestamp = {2012.05.14} } @InProceedings{Mairal2010a, Title = {Network Flow Algorithms for Structured Sparsity.}, Author = {Mairal, Julien and Jenatton, Rodolphe and Obozinski, Guillaume and Bach, Francis R and others}, Booktitle = {Adv. Neur. Inf. Proc. Sys. (NIPS)}, Year = {2010}, Pages = {1558--1566}, Volume = {23}, File = {mairal2010network.pdf:mairal2010network.pdf:PDF}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @InProceedings{Mairal2012, Title = {Complexity analysis of the {L}asso regularization path}, Author = {Mairal, Julien and Yu, Bin}, Booktitle = {Proc. Int. Conf. Mach. Learn. (ICML)}, Year = {2012}, Owner = {yhli}, Timestamp = {2014.07.11} } @Book{Mallat1999, Title = {A wavelet tour of signal processing}, Author = {Mallat, S.}, Publisher = {Academic press}, Year = {1999}, Owner = {jmscarlett}, Timestamp = {2014.11.25} } @Article{Mallat1993, Title = {Matching pursuits with time-frequency dictionaries}, Author = {Mallat, St\'{e}phane G. and Zhang, Zhifeng}, Journal = {IEEE Trans. Sig. Proc.}, Year = {1993}, Month = dec, Number = {12}, Pages = {3397--3415}, Volume = {41}, Owner = {yhli}, Timestamp = {2014.03.28} } @Article{Mallows1973, Title = {Some comments on {$C_p$}}, Author = {Mallows, C. L.}, Journal = {Technometrics}, Year = {1973}, Month = nov, Number = {4}, Pages = {661--675}, Volume = {15}, Owner = {yhli}, Timestamp = {2014.07.08} } @Article{Manduchi1998, Title = {Efficient deformable filter banks}, Author = {Manduchi, R. and Perona, P. and Shy, D.}, Journal = {IEEE Trans. Sig. Proc.}, Year = {1998}, Month = {April}, Number = {4}, Pages = {1168--1173}, Volume = {46}, Doi = {10.1109/78.668570}, File = {Efficient Deformable Filter Banks - Manduchi.pdf:VC/Efficient Deformable Filter Banks - Manduchi.pdf:PDF}, Owner = {luca}, Timestamp = {2007.01.25} } @Article{Mangasarian2011, Title = {Probability of unique integer solution to a system of linear equations}, Author = {Mangasarian, O. L. and Recht, Benjamin}, Journal = {Eur. J. Oper. Res.}, Year = {2011}, Pages = {27--30}, Volume = {214}, Owner = {yhli}, Timestamp = {2014.07.01} } @Article{Manning2001, Title = {Estimating log models: To transform or not to transform?}, Author = {Willard G Manning and John Mullahy}, Journal = {J. Health Econ.}, Year = {2001}, Month = {July}, Number = {4}, Pages = {461-494}, Volume = {20}, ISSN = {0167-6296}, Owner = {jmscarlett} } @Article{Mansouri2012, Title = {A Polynomial Interior-Point Algorithm for Monotone Linear Complementarity Problems}, Author = {H. Mansouri and M. Pirhaji}, Journal = {J. Opt. Theory and Apps.}, Year = {2012}, Pages = {1--11}, File = {:Papers/Mansouri2012.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.15} } @Book{Maplesoft2004, Title = {{M}aple}, Author = {Maplesoft}, Publisher = {Maple Inc.}, Year = {2004}, Address = {Waterloo}, Edition = {9.0}, Keywords = {miscellaneous}, Owner = {quoctd}, Timestamp = {2013.08.23} } @PhdThesis{Maratos1978, Title = {{E}xact penaly function algorithms for finite-dimensional and control optimization problems}, Author = {Maratos, N.}, School = {IMperial College}, Year = {1978}, Address = {London}, Keywords = {optimization}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Marinelli2006, Title = {Non-invasive Measurement of iron overload in the human body}, Author = {Marinelli, M. and Cuneo, S. and Gianesin, B. and Lavagetto, A. and Lamagna, M. and Oliveri, E. and Sobrero, G. and Terenzani, L. and Forni, G.L.}, Journal = {IEEE Trans. App. Super.}, Year = {2006}, Month = {June}, Number = {2}, Pages = {1513-1518}, Volume = {16}, File = {Marinelli06Noninvasive.pdf:/home/baldazen/Desktop/Scienza/Fisica/Marinelli06Noninvasive.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.01.25} } @InProceedings{Marinelli2006a, Title = {Whole liver iron overload measurement by a non-cryogenic magnetic susceptometer}, Author = {Marinelli, M. and Gianesin, B. and Lamagna, M. and Lavagetto, A. and Oliveri, E. and Saccone, M.L. and Sobrero, G. and Terenzani, L. and Forni, G.L.}, Booktitle = {Proc. Int. Conf. Biomagnetism}, Year = {2006}, Address = {Vancouver, BC, Canada}, Editor = {Cheyne, D. and Ross, B. and Stroink, G. and Weinberg H.}, Series = {The Proceedings: International Congress Series}, Volume = {New Frontiers in Biomagnetism}, File = {Marinelli06WholeLiver.pdf:/home/baldazen/Desktop/Scienza/Fisica/Marinelli06WholeLiver.pdf:PDF}, Owner = {baldazen}, Timestamp = {2008.01.25} } @Article{Marks1978, Title = {{A} {G}eneral {I}nner {A}pproximation {A}lgorithm for {N}onconvex {M}athematical {P}rograms}, Author = {B. R. Marks and G. P. Wright}, Journal = {Oper. Res.}, Year = {1978}, Number = {4}, Pages = {681--683}, Volume = {26}, File = {:Papers/Marks1978.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.04.09} } @InProceedings{Marquardt2002, Title = {{N}onlinear {M}odel {R}eduction for {O}ptimization and {C}ontrol of {T}ransient {C}hemical {P}rocesses}, Author = {W. Marquardt}, Booktitle = {Process Control VI. {AIChE} Symp.}, Year = {2002}, Editor = {J.B. Rawlings and B.A. Ogunnaike and J.W. Eaton}, Pages = {12--42}, Series = {326}, Volume = {98}, Keywords = {model reduction chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Marquardt1992, Title = {{R}echnergest\"utzte {E}rstellung verfahrenstechnischer {P}rozessmodelle.}, Author = {W. Marquardt}, Journal = {Chemie {I}ngenieur {T}echnik}, Year = {1992}, Pages = {25--40}, Volume = {64}, Keywords = {chemistry}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Unpublished{Martinsen2002, Title = {{A}pplication of optimization algorithms to nonlinear {MPC}}, Author = {Martinsen, F. and Biegler, L.T. and Foss, B.A}, Note = {In {P}roceedings of 15th {IFAC} World Congress}, Year = {2002}, Keywords = {NMPC optimal control}, Owner = {quoctd}, Timestamp = {2013.08.23} } @Article{Martinson1999, Title = {{A}n interior point method in {D}antzig–{W}olfe decomposition}, Author = {R.K. Martinson and J. Tind}, Journal = {Comp. and Opp. Res.}, Year = {1999}, Number = {12}, Pages = {1195--1216}, Volume = {26}, File = {:Papers/Martinson1999.pdf:PDF}, Owner = {quoctd}, Timestamp = {2012.10.22} } @Article{Martone2003, Title = {Distribution of NF-kappaB-binding sites across human chromosome 22.}, Author = {Rebecca Martone and Ghia Euskirchen and Paul Bertone and Stephen Hartman and Thomas E Royce and Nicholas M Luscombe and John L Rinn and F. Kenneth Nelson and Perry Miller and Mark Gerstein and Sherman Weissman and Michael Snyder}, Journal = {Proc. Nat. Acad. Sci.}, Year = {2003}, Month = {Oct}, Number = {21}, Pages = {12247--12252}, Volume = {100}, Abstract = {We have mapped the chromosomal binding site distribution of a transcription factor in human cells. The NF-kappaB family of transcription factors plays an essential role in regulating the induction of genes involved in several physiological processes, including apoptosis, immunity, and inflammation. The binding sites of the NF-kappaB family member p65 were determined by using chromatin immunoprecipitation and a genomic microarray of human chromosome 22 DNA. Sites of binding were observed along the entire chromosome in both coding and noncoding regions, with an enrichment at the 5' end of genes. Strikingly, a significant proportion of binding was seen in intronic regions, demonstrating that transcription factor binding is not restricted to promoter regions. NF-kappaB binding was also found at genes whose expression was regulated by tumor necrosis factor alpha, a known inducer of NF-kappaB-dependent gene expression, as well as adjacent to genes whose expression is not affected by tumor necrosis factor alpha. Many of these latter genes are either known to be activated by NF-kappaB under other conditions or are consistent with NF-kappaB's role in the immune and apoptotic responses. Our results suggest that binding is not restricted to promoter regions and that NF-kappaB binding occurs at a significant number of genes whose expression is not altered, thereby suggesting that binding alone is not sufficient for gene activation.}, Doi = {10.1073/pnas.2135255100}, File = {Martone03 - Distribution of nf-kb-binding sites.pdf:BIO/Martone03 - Distribution of nf-kb-binding sites.pdf:PDF}, Keywords = {Binding Sites; Chromosome Mapping; Chromosomes, Human, Pair 22; Consensus Sequence; Gene Expression Regulation; Hela Cells; Humans; Introns; NF-kappa B; Oligonucleotide Array Sequence Analysis; Precipitin Tests; Pro; Recombinant Proteins; Transcription Factor RelA; Tumor Necrosis Factor-alpha; moter Regions (Genetics)}, Owner = {luca}, Pii = {2135255100}, Pmid = {14527995}, Timestamp = {2007.01.25}, Url = {http://dx.doi.org/10.1073/pnas.2135255100} } @Book{Massart2007, Title = {Concentration Inequalities and Model Selection}, Author = {Massart, Pascal}, Publisher = {Springer-Verl.}, Year = {2007}, Address = {Berlin}, Owner = {yhli}, Timestamp = {2014.07.25} } @Article{Mastroeni2000, Title = {On auxiliary principle for equilibrium problems}, Author = {G. Mastroeni}, Journal = {Publicatione del Dipartimento di Mathematica dell’Universita di Pisa}, Year = {2000}, Pages = {1244--1258}, Volume = {3}, Owner = {quoctd}, Timestamp = {2013.11.13} } @Article{Mathe2002, Title = {Moduli of continuity for operator valued functions}, Author = {Math{\'e}, P. and Pereverzev, S. V.}, Journal = {Numer. Funct. Anal. Optim.}, Year = {2002}, Number = {5-6}, Pages = {623--631}, Volume = {23}, Coden = {NFADOL}, File = {:Statistical Learning\\mathe02moduli.pdf:PDF}, Fjournal = {Numerical Functional Analysis and Optimization. An International Journal}, Mrclass = {47A56 (47A30 47A53)}, Mrnumber = {2003g:47029}, Owner = {Luca}, Timestamp = {2008.08.13} } @Article{Mattingley2010a, Title = {Real-Time Convex Optimization in Signal Processing}, Author = {J. Mattingley and S. Boyd}, Journal = {IEEE Sig. Proc. Mag.}, Year = {2010}, Number = {3}, Pages = {50-61}, Volume = {27}, Owner = {quoctd}, Timestamp = {2013.01.17} } @Article{Mauntz2008, Title = {Neue Auswertungsalgorithmen und optimierte Anregung f