Homec4science
Diffusion SP4E-TB-TL-FR (W8_ex4_1to4_FR) Browse

R7571/SP4E18.sublime-workspace
fdc10f4639ffW8_ex4_1to4_FR

Last Change
Raw File

SP4E18.sublime-workspace
View Options

{
"auto_complete": {
"selected_items": [
[
"set",
"setPrecision\t(dumper.hh)"
],
[
"dump",
"dumper"
],
[
"serie",
"seriestype"
],
[
"file",
"filecode"
],
[
"write",
"write.hh\t(write.cc)"
],
[
"Compute",
"ComputePi"
],
[
"Com",
"ComputePi"
],
[
"method",
"method_label"
],
[
"a",
"argv"
],
[
"ai",
"arithmetic.hh\t(README.md)"
],
[
"inc",
"includes\tfunc"
],
[
"Dump",
"DumperSeries"
],
[
"line",
"linewidth"
],
[
"sf",
"sinf"
],
[
"itre",
"iterations"
],
[
"com",
"ComputePi\tclass"
],
[
"compu",
"ComputeArithmetic\tclass"
],
[
"seri",
"seriestype"
],
[
"plot",
"plotSurface"
],
[
"inter",
"intersectSets"
],
[
"map2",
"map2Set"
],
[
"ia",
"I-algorithm\tinc"
],
[
"sta",
"stack_values"
],
[
"heap",
"heap_allocation"
],
[
"vae",
"values"
],
[
"es",
"else\t(ex1.cc)"
],
[
"tan",
"tanhx2"
],
[
"arg",
"argc"
],
[
"zoom",
"zoom_xbounds"
],
[
"get_xl",
"get_xticklabels\t(effvars.py)"
],
[
"F",
"False"
],
[
"plotEf",
"plotEffectiveCapacitance\t(effvars.py)"
],
[
"main",
"mainfig"
],
[
"Cm",
"Cmbounds"
],
[
"look",
"lookups2D"
],
[
"Fr",
"FRbounds"
],
[
"comp",
"comprates"
],
[
"1e3",
"1e-3"
],
[
"flul",
"full_fpaths\tparam"
],
[
"full",
"full_comprates"
],
[
"mu",
"mu_full_comptimes"
],
[
"read_",
"read_csv\tfunction"
],
[
"sonic_",
"sonic_comptimes"
],
[
"ind",
"index_col"
],
[
"plo",
"plotSpikingMetrics\tfunction"
],
[
"lo",
"logscale"
],
[
"cool",
"colors_dict"
],
[
"Dc",
"DCs"
],
[
"spike",
"spikeamp"
],
[
"metri",
"metrics_dict"
],
[
"color",
"colors"
],
[
"sonci",
"sonic_metrics"
],
[
"fre",
"frequency\t(comp_spikemetrics_CW_vs_frequency.py)"
],
[
"am",
"amplitudes"
],
[
"upd",
"updated_queue"
],
[
"fp",
"fpaths"
],
[
"cre",
"createSimQueue\tfunction"
],
[
"empt",
"empty_like\t(fig3.py)"
],
[
"fig",
"figset"
],
[
"in",
"inputdir"
],
[
"CW",
"CW_sonic_fpaths"
],
[
"plotC",
"plotComp"
],
[
"son",
"sonic"
],
[
"sonic",
"sonic_metrics"
],
[
"toff",
"toffset"
],
[
"AS",
"ASTIM_filecode\tfunction"
],
[
"titration",
"titration_file"
],
[
"load",
"loads\tfunction"
],
[
"jon",
"json"
],
[
"neu",
"neurons"
],
[
"Ath",
"Athrs_sparse"
],
[
"DC",
"DCs_sparse"
],
[
"font",
"fontsize=fs"
],
[
"get",
"get"
],
[
"linewidth",
"linewidth=0.5"
],
[
"set_",
"set_yticks"
],
[
"Cort",
"CorticalLTS"
],
[
"cm2",
"cm2inch"
],
[
"rgxp",
"rgxp_mech"
],
[
"fra",
"frameon\t(pltutils.py)"
],
[
"actmap_fil",
"actmap_filename"
],
[
"Neuron",
"NeuronalBilayerSonophore\tclass"
],
[
"sele",
"selectDirDialog"
],
[
"Arg",
"ArgumentParser\tclass"
],
[
"mesh",
"meshedges"
],
[
"FR",
"FR_bounds\tstatement"
],
[
"FR_",
"FR_scale"
],
[
"input",
"inputdir"
],
[
"Neur",
"NeuronalBilayerSonophore\t(nbls.py)"
],
[
"im",
"import"
],
[
"getLo",
"getLookups2D"
],
[
"MECH",
"MECH_filecode"
],
[
"ES",
"ESTIM_filecode"
],
[
"el",
"elec"
],
[
"none",
"None\tkeyword"
],
[
"output",
"outputs"
],
[
"lookups",
"lookups4D"
],
[
"lok",
"lookups"
],
[
"pl",
"plt"
],
[
"Sav",
"SaveFileDialog"
],
[
"Save",
"SaveFigDialog"
],
[
"MEC",
"MECH_title"
],
[
"pkl",
"pkl_filepath"
],
[
"ge",
"getNeuronLookupsFile\tfunction"
],
[
"Lenn",
"LennardJones\t(bls.py)"
],
[
"In",
"Intensity2Pressure"
],
[
"out",
"outdir"
],
[
"dat",
"date_str"
],
[
"Bila",
"BilayerSonophore"
],
[
"tco",
"tcomp\t(utils.py)"
],
[
"log",
"logentry"
],
[
"filen",
"filename"
],
[
"sheet",
"sheetname"
],
[
"default",
"defaults"
],
[
"ne",
"neurons"
],
[
"neuron",
"neuron_str"
],
[
"nr",
"neurons\tstatement"
],
[
"Th",
"ThalamicRE\tclass"
],
[
"Py",
"PySONIC"
],
[
"pos",
"postpro\tmodule"
],
[
"__",
"__main__"
],
[
"Neu",
"NeuronalBilayerSonophore\t(ASTIM.py)"
],
[
"simul",
"simulate"
],
[
"sim",
"simulate\t(sonic.py)"
],
[
"neurons",
"neurons_str"
],
[
"eff",
"eff_coeffs"
],
[
"no",
"nofreq_queue"
],
[
"Sonci",
"SonicNeuron\t(sonic.py)"
]
]
},
"buffers": [
{
"file": "work/week6/series/homework2/src/dumper.hh",
"settings": {
"buffer_size": 599,
"encoding": "UTF-8",
"line_ending": "Windows"
}
},
{
"file": "work/week6/series/homework2/src/print.hh",
"settings": {
"buffer_size": 439,
"encoding": "UTF-8",
"line_ending": "Windows"
}
},
{
"file": "work/week6/series/homework2/src/write.hh",
"settings": {
"buffer_size": 430,
"encoding": "UTF-8",
"line_ending": "Windows"
}
},
{
"file": "work/week6/series/homework2/src/main.cc",
"settings": {
"buffer_size": 1837,
"encoding": "UTF-8",
"line_ending": "Windows"
}
},
{
"file": "work/week6/series/homework2/src/print.cc",
"settings": {
"buffer_size": 876,
"encoding": "UTF-8",
"line_ending": "Windows"
}
},
{
"file": "lectures/code_snippets/fstream.cpp",
"settings": {
"buffer_size": 291,
"line_ending": "Windows"
}
},
{
"file": "work/week6/series/homework2/src/dumper.cc",
"settings": {
"buffer_size": 119,
"encoding": "UTF-8",
"line_ending": "Windows"
}
},
{
"file": "work/week6/series/homework2/src/write.cc",
"settings": {
"buffer_size": 1064,
"encoding": "UTF-8",
"line_ending": "Windows"
}
}
],
"build_system": "",
"build_system_choices": [],
"build_varint": "",
"command_palette": {
"height": 357,
"last_filter": "",
"selected_items": [
[
"stat",
"Git: Status"
],
[
"ubu",
"Ubuntu Bash"
],
[
"ubun",
"Ubuntu Bash"
],
[
"push",
"Git: Push"
],
[
"comm",
"Git: Quick Commit (repo)"
],
[
"ana",
"Anaconda Prompt"
],
[
"commit",
"Git: Quick Commit (repo)"
],
[
"log",
"Git: Log All"
],
[
"com",
"Git: Commit"
],
[
"commi",
"Git: Quick Commit (repo)"
],
[
"previ",
"Markdown Preview: Preview in Browser"
],
[
"pre",
"Markdown Preview: Preview in Browser"
],
[
"sta",
"Git: Status"
],
[
"list",
"Package Control: List Packages"
],
[
"sid",
"View: Toggle Side Bar"
],
[
"pus",
"Git: Push"
],
[
"side",
"View: Toggle Side Bar"
],
[
"ub",
"Ubuntu Bash"
],
[
"ins",
"Package Control: Install Package"
],
[
"term",
"Terminal"
],
[
"rein",
"Indentation: Reindent Lines"
],
[
"inden",
"Indentation: Reindent Lines"
],
[
"comman",
"Preferences: Commands - User"
],
[
"git list",
"Git: Stash List"
],
[
"lint",
"SublimeLinter: Lint This View"
],
[
"ter",
"Terminal"
],
[
"li",
"Package Control: List Packages"
],
[
"lin",
"SublimeLinter: Lint This View"
],
[
"insta",
"Package Control: Install Package"
],
[
"remo",
"Package Control: Remove Package"
],
[
"sublimelinter",
"SublimeLinter: Toggle Highlights"
],
[
"ab",
"About"
],
[
"te",
"Terminal"
],
[
"git stat",
"Git: Status"
],
[
"go",
"Anaconda: Goto object assignment"
],
[
"go to",
"Anaconda: Goto object assignment"
],
[
"got",
"Anaconda: Goto object assignment"
],
[
"temr",
"Terminal"
],
[
"git",
"Git: Status"
],
[
"st",
"Git: Status"
],
[
"bar",
"View: Toggle Side Bar"
],
[
"",
"About"
],
[
"prev",
"Markdown Preview: Preview in Browser"
],
[
"prett",
"Pretty JSON: Format (Pretty Print) JSON"
],
[
"inst",
"Package Control: Install Package"
],
[
"statu",
"Git: Status"
],
[
"git commi",
"Git: Quick Commit (repo)"
],
[
"comit",
"Git: Quick Commit (repo)"
],
[
"mak",
"Markdown Preview: Preview in Browser"
],
[
"git commit ",
"Git: Quick Commit (repo)"
],
[
"git add",
"Git: Add All"
],
[
"status",
"Git: Status"
],
[
"packa",
"Preferences: Browse Packages"
],
[
"goto",
"Package Control: Discover Packages"
],
[
"repl p",
"SublimeREPL: Python - IPython"
],
[
"repl py",
"SublimeREPL: Python"
],
[
"theme",
"UI: Select Color Scheme"
],
[
"list pa",
"Package Control: List Packages"
],
[
"lo",
"Git: Log All"
],
[
"commitr",
"Git: Quick Commit (repo)"
],
[
"git repo",
"Git: Quick Commit (repo)"
],
[
"commit repo",
"Git: Quick Commit (repo)"
],
[
"doc",
"Anaconda: Display object docs"
],
[
"pu",
"Git: Push"
],
[
"auto",
"Anaconda: Autoformat PEP8 Errors"
],
[
"git st",
"Git: Status"
],
[
"them",
"Colorsublime: Install Theme"
],
[
"intall",
"Package Control: Install Package"
],
[
"boxy",
"Boxy Theme: Preferences"
],
[
"color",
"Colorsublime: Install Theme"
],
[
"colo",
"Colorsublime: Install Theme"
],
[
"in",
"Package Control: Install Package"
]
],
"width": 454
},
"console": {
"height": 171,
"history": [
"cls",
"clear"
]
},
"distraction_free": {
"menu_visible": true,
"show_minimap": false,
"show_open_files": false,
"show_tabs": false,
"side_bar_visible": false,
"status_bar_visible": false
},
"expanded_folders": [
"/C/Users/Theo/Documents/SP4E18",
"/C/Users/Theo/Documents/SP4E18/lectures",
"/C/Users/Theo/Documents/SP4E18/lectures/code_snippets"
],
"file_history": [
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/build/log.txt",
"/C/Users/Theo/Documents/SP4E18/SP4E18.sublime-project",
"/C/Users/Theo/Documents/SP4E18/lectures/code_snippets/sstream_main_arguments.cpp",
"/C/Users/Theo/Desktop/main.cc",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/main.cc",
"/C/Users/Theo/Documents/SP4E18/README.md",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/CMakeLists.txt",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/series.hh",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/plot_results.py",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/build/computearithmetic.csv",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/write.cc",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/arithmetic.hh",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/pi.hh",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/pi.cc",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/arithmetic.cc",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/write.hh$.cpp",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/README.md",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/algebraic.hh",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/algebraic.cc",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/dumper.hh",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/src/README.md",
"/C/Users/Theo/Documents/SP4E18/work/week6/series/homework2/.gitignore",
"/C/Users/Theo/Documents/SP4E18/work/week4/conjugate_gradient/optimizer.py",
"/C/Users/Theo/Documents/SP4E18/.gitignore",
"/C/Users/Theo/Documents/SP4E18/lectures/.gitignore",
"/C/Users/Theo/Documents/SP4E18/work/week4/conjugate_gradient/conjugate_gradient.py",
"/C/Users/Theo/Documents/SP4E18/work/week5/series/dumper.py",
"/C/Users/Theo/Documents/SP4E18/work/week5/series/series.py",
"/C/Users/Theo/Documents/SP4E18/work/.gitignore",
"/C/Users/Theo/Documents/SP4E18/work/week2/pi/sources/main.cc",
"/C/Users/Theo/Documents/SP4E18/work/week5/Series.py",
"/C/Users/Theo/Documents/SP4E18/work/week5/ComputeArithmetic.py",
"/C/Users/Theo/Documents/SP4E18/exercises/week1/python-hello/sources/hello.py",
"/C/Users/Theo/Downloads/2dcollections3d_demo.py",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/memory_third.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/memory_second.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/memory_first.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/CMakeLists.txt",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/ex6.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/ex5.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/.gitignore",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/ex2.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/build/cmake_install.cmake",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/build/CMakeFiles/Makefile2",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/build/Makefile",
"/C/Users/Theo/AppData/Roaming/Sublime Text 3/Packages/User/Default.sublime-commands",
"/C/Users/Theo/Documents/fit Vmeff/fit_Vmeff.py",
"/C/Users/Theo/Documents/BCdemystifier/init.txt",
"/C/Users/Theo/Documents/BCdemystifier/New Text Document.txt",
"/C/Users/Theo/Documents/BCdemystifier/.gitignore",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/ex3.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/ex1.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/SP4E-TNE18.sublime-project",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/build/toto.txt",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/hello.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/float/sources/main.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/pi/sources/main.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/series.cc",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/series.hh",
"/C/Users/Theo/AppData/Roaming/Sublime Text 3/Packages/User/ubuntu_bash.py",
"/C/Users/Theo/AppData/Roaming/Sublime Text 3/Packages/User/anaconda_prompt.py",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/CMakeLists.txt",
"/C/Users/Theo/Documents/SP4E-TNE18/.gitignore",
"/C/Users/Theo/Documents/SP4E-TNE18/test.cpp",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/build/CMakeFiles/Makefile2",
"/C/Users/Theo/Documents/SP4E-TNE18/lectures/list-package-Debian.txt",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/build/CMakeCache.txt",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week2/hello/sources/build/hello",
"/C/Users/Theo/Documents/SP4E-TNE18/work/week3/stl/starting_point/empty_main.cc",
"/C/Users/Theo/Desktop/key.txt",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig7.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig4.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig3.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig2.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 7 - behavior maps/behavior_maps.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/effvars.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/__init__.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 3 - QS approximation/test_subthr_mech.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig5.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig6.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/actmap.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/utils.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/PW DC/comp_comprates_PW_vs_DC.py",
"/C/Users/Theo/Desktop/test.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW amplitude/comp_comprates_CW_vs_amplitude.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW regimes/comp_comprates_CW_vs_regimes.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/utils.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/PW PRF/comp_traces_PW_vs_PRF.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/postpro.py",
"/C/Users/Theo/Documents/PySONIC/paper figures/fig5-6.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/spikemetrics.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/PW DC/comp_spikemetrics_PW_vs_DC.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/comp.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/PW DC/comp_traces_PW_vs_DC.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/batches.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW frequency/comp_traces_CW_vs_frequency.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW frequency/comp_spikemetrics_CW_vs_frequency.py",
"/C/Users/Theo/Documents/PySONIC/scripts/run_estim.py",
"/C/Users/Theo/Documents/PySONIC/scripts/run_astim.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW amplitude/comp_spikemetrics_CW_vs_amplitude.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/core/nbls.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/constants.py",
"/C/Users/Theo/Documents/PySONIC/scripts/plot_effective_variables.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW regimes/comp_spikes_CW_vs_regimes.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW regimes/run_CW_vs_regimes.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW regimes/comp_traces_CW_vs_regimes.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW amplitude/comp_traces_CW_vs_amplitude.py",
"/C/Users/Theo/Desktop/SONIC paper data/Fig 5-6 - model validation/CW amplitude/run_CW_vs_amplitude.py",
"/C/Users/Theo/Documents/PySONIC/scripts/run_lookups.py",
"/C/Users/Theo/Documents/PySONIC/.gitignore",
"/C/Users/Theo/Desktop/Intramembrane Cavitation Detection/experiments 04.18/calibration_utils.py",
"/C/Users/Theo/Desktop/Intramembrane Cavitation Detection/model predictions/utils.py",
"/C/Users/Theo/Desktop/Intramembrane Cavitation Detection/experiments 04.18/utils.py",
"/C/Users/Theo/Desktop/Paper data/Fig 2 - optimization pipeline/plot_pipeline_figure.py",
"/C/Users/Theo/Desktop/Paper data/Fig 2 - optimization pipeline/HH_equations.tex",
"/C/Users/Theo/Documents/PySONIC/scripts/plot_gating_kinetics.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/neurons/TC.mod",
"/C/Users/Theo/Documents/PySONIC/scripts/records.csv",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/batch.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/neurons/leech.py",
"/C/Users/Theo/Documents/PySONIC/scripts/plot.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/neurons/cortical.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/neurons/thalamic.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/plt/pltutils.py",
"/C/Users/Theo/Desktop/Paper data/Fig 7 - behavior maps/behavior_maps.py",
"/C/Users/Theo/Documents/PySONIC/scripts/plot_activation_map.py",
"/C/Users/Theo/Desktop/Paper data/Fig 7 - behavior maps/plot_activation_map.py",
"/C/Users/Theo/Documents/PySONIC/PySONIC/core/pneuron.py"
],
"find": {
"height": 27
},
"find_in_files": {
"height": 340,
"where_history": [
"",
"C:\\Users\\Theo\\Desktop\\Paper data,*.py",
""
]
},
"find_state": {
"case_sensitive": true,
"find_history": [
"std::cout",
"stringstream",
"filecode",
"Algebraic",
"ALGEBRAIC",
"wind",
"gcc",
"g++",
"underflow",
"vec",
"locator",
"interp1d",
"Cmavg",
"'fig7a'",
"CW_Athrs",
"index_col",
"extractCompTimes",
"getSims",
"getSpikingMetrics",
"sipkeamp",
"plotSpikingMetrics",
"full_paths",
"sonic_paths",
"CW_sonic_fpaths",
"CW_full_fpaths",
"plotSpikingMetrics",
"getSpikingMetrics",
"computeSpikeMetrics",
"createSimQueue",
"xlslog",
"effective",
"classic",
"amps",
"effective",
"classic",
"computeSpikeMetrics",
"add_patch",
"bbox_to_",
"subplots_ad",
"Qm",
"np.int",
"xlslog",
"computeAStimLookups",
"from PySONIC.plt",
"('PySONIC')",
"from PySONIC.plt",
"timeunits",
"cm2inch",
"neuron",
"plotRawTrace",
"logging",
"defaults",
"onClick",
"defaults",
"FRlims",
"tmax",
"neuron",
"cm2",
"colorscale",
"yscale",
"FR_bounds",
"A_scale",
"FR_scale",
"ybounds",
"si_format",
"toffset",
"getActivationMap",
"Vm",
"plotRawTrace",
"getLookups2D",
"getNeuronLookupsFile",
"ctivation",
"getActivationMap",
"on_click",
"plotActivationMap",
"matplotlib",
"cm",
"computeMeshEdges",
"getStimTiming",
"getPatchesLoc",
"patch",
"computeMeshEdges",
"SaveFigDialog",
"fig_ext",
"SaveFigDialog",
"directory",
"name ",
"logger",
"npatches",
"Rec",
"title",
"ESTIM_CW_title",
"getP",
"inset",
"Rectangle",
"getNeuronsDict",
"BilayerSonophore",
"Rectangle",
"InteractiveLegend",
"bbox_to_anchor",
"ngas",
"nQ",
"200",
"bls.simulate",
"npc",
"filecode",
"pkl_filename",
"pkl_root",
"nbls",
"pickle.load",
"NeuronalBilayerSonophore",
"DownSample",
"nblscore",
"getLookups2D",
"getNeuronLookupsFile",
"downsample",
"extractCompTimes",
"computeMeshEdges",
"LennardJones",
"rescale",
"find_nearest",
"DownSample",
"xlslog",
"filterwarnings",
"self",
"checkBatchLog",
"CheckBatchLog",
"filename"
],
"highlight": true,
"in_selection": false,
"preserve_case": false,
"regex": false,
"replace_history": [
"os",
"sname",
"Arithmetic",
"ARITHMETIC",
"arr",
"prefix",
"spikeamp",
"full_fpaths",
"sonic_fpaths",
"sonic_paths",
"full_paths",
"sonic",
"full",
"xvar",
"sonic",
"full",
"Qthr",
"FRscale",
"Ascale",
"FRbounds",
"Ascale",
"FRscale",
"Vbounds",
"getStimPulses",
"pulse",
"gas.size",
"charges.size",
"downsample",
"bls",
"filepath",
"1.",
"None",
"2",
"1",
"Qref",
"nbls",
"NeuronalBilayerSonophore",
"queue_out",
"queue_in",
"queue",
"Adrive",
"self",
"self.neuron",
"fullDerivatives",
"ode",
"Arange",
"Astim",
"outpath",
"derivatives",
"PointNeuron",
"Aref",
"Qref",
"Aref",
"aref",
"fref",
"dref",
"='sonic'",
"PySONIC",
"getLogger('PySONIC')",
"from PySONIC import",
"from PySONIC."
],
"reverse": false,
"show_context": true,
"use_buffer2": true,
"whole_word": false,
"wrap": true
},
"groups": [
{
"selected": 0,
"sheets": [
{
"buffer": 0,
"file": "work/week6/series/homework2/src/dumper.hh",
"semi_transient": false,
"settings": {
"buffer_size": 599,
"regions": [],
"selection": [
[
417,
417
]
],
"settings": {
"SL.125.region_keys": [],
"SL.13.region_keys": [],
"SL.14.region_keys": [],
"SL.15.region_keys": [],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
23,
14,
44,
33,
6,
179,
99,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"tab_size": 4,
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 3,
"type": "text"
},
{
"buffer": 1,
"file": "work/week6/series/homework2/src/print.hh",
"semi_transient": false,
"settings": {
"buffer_size": 439,
"regions": [],
"selection": [
[
431,
431
]
],
"settings": {
"SL.14.region_keys": [],
"SL.21.region_keys": [],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
23,
19,
41,
4,
15,
2,
55,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 4,
"type": "text"
},
{
"buffer": 2,
"file": "work/week6/series/homework2/src/write.hh",
"semi_transient": false,
"settings": {
"buffer_size": 430,
"regions": [],
"selection": [
[
423,
423
]
],
"settings": {
"SL.15.region_keys": [],
"SL.16.region_keys": [],
"SL.98.region_keys": [],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
23,
17,
29,
50,
9,
86,
127,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"tab_size": 4,
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 5,
"type": "text"
}
]
},
{
"selected": 0,
"sheets": [
{
"buffer": 3,
"file": "work/week6/series/homework2/src/main.cc",
"semi_transient": false,
"settings": {
"buffer_size": 1837,
"regions": [],
"selection": [
[
1394,
1394
]
],
"settings": {
"SL.16.region_keys": [
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"SL.cpplint.Highlights.|d2aafa24c9b25b266cb8209f326557df9507537bea4b4bf87ca183217825ea7e|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Highlights.|ec21c0e02fe8597d0f8567e417d172ed42f65246067562056d8f3fcdd34a39bb|region.redish markup.error.sublime_linter|32",
"sublime_linter.protected_regions",
"SL.cpplint.Highlights.|7e0c5a5f856ad1fe7bb4afd2df474d1c99640af1be1d7c517364a505d61feed7|region.redish markup.error.sublime_linter|32"
],
"SL.28.region_keys": [
"sublime_linter.protected_regions",
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"SL.cpplint.Highlights.|7ed975986a500fcc10cf2785e7e2e11287dbb2a361841fd2e551c89badc0ede8|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Highlights.|821e09e662371e08a26a3c059190c54a76ce0e93b143845eda4ea658928be23e|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Highlights.|6e1cee5def72136cd70e77d779ae436618420454b6675950247bc1477e993a9b|region.redish markup.error.sublime_linter|32"
],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
23,
14,
16,
33,
10,
187,
232,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"tab_size": 4,
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 432,
"zoom_level": 1
},
"stack_index": 0,
"type": "text"
},
{
"buffer": 4,
"file": "work/week6/series/homework2/src/print.cc",
"semi_transient": false,
"settings": {
"buffer_size": 876,
"regions": [],
"selection": [
[
342,
342
]
],
"settings": {
"SL.141.region_keys": [
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"SL.cpplint.Highlights.|aa76f46cf2505e440bd2f057fc7364cbf3efa94a425dae5c35d9065eb6b56acf|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Highlights.|9023c2bd2ea1a71a954de7d9fda3ba93dcb90cbd471dd258509eaf1ed8f75da3|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Highlights.|644eea71d147386b45d006a632aebe1e94d9cc150e264a155315f3f63fe6a48a|region.redish markup.error.sublime_linter|32",
"sublime_linter.protected_regions"
],
"SL.18.region_keys": [
"SL.cpplint.Highlights.|09a897ab1b3311bb62344651a66e37e53cb42d145069405d29f84bd11094e8c9|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"sublime_linter.protected_regions",
"SL.cpplint.Highlights.|644eea71d147386b45d006a632aebe1e94d9cc150e264a155315f3f63fe6a48a|region.redish markup.error.sublime_linter|32"
],
"SL.19.region_keys": [
"sublime_linter.protected_regions",
"SL.cpplint.Highlights.|09a897ab1b3311bb62344651a66e37e53cb42d145069405d29f84bd11094e8c9|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Highlights.|644eea71d147386b45d006a632aebe1e94d9cc150e264a155315f3f63fe6a48a|region.redish markup.error.sublime_linter|32",
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot"
],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
23,
19,
41,
4,
15,
2,
55,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 1,
"type": "text"
},
{
"buffer": 5,
"file": "lectures/code_snippets/fstream.cpp",
"semi_transient": true,
"settings": {
"buffer_size": 291,
"regions": [],
"selection": [
[
35,
35
]
],
"settings": {
"SL.34.region_keys": [
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"sublime_linter.protected_regions",
"SL.cpplint.Highlights.|2c6781ea7d614afcb76475fb3eca400487476d685987383034d4d7f2d9d5e546|region.redish markup.error.sublime_linter|32"
],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
2,
12,
28,
4,
11,
83,
211,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax"
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 2,
"type": "text"
},
{
"buffer": 6,
"file": "work/week6/series/homework2/src/dumper.cc",
"semi_transient": false,
"settings": {
"buffer_size": 119,
"regions": [],
"selection": [
[
118,
118
]
],
"settings": {
"SL.18.region_keys": [],
"SL.22.region_keys": [
"sublime_linter.protected_regions"
],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
24,
8,
49,
33,
8,
6,
145,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"tab_size": 4,
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 6,
"type": "text"
},
{
"buffer": 7,
"file": "work/week6/series/homework2/src/write.cc",
"semi_transient": false,
"settings": {
"buffer_size": 1064,
"regions": [],
"selection": [
[
276,
276
]
],
"settings": {
"SL.122.region_keys": [
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"SL.cpplint.Highlights.|ea1452cc84d26a63488d7e361cbc50ccb5dc155b63299c444d53ba28e801f2b7|region.redish markup.error.sublime_linter|32",
"sublime_linter.protected_regions"
],
"SL.17.region_keys": [
"sublime_linter.protected_regions",
"SL.cpplint.Gutter.|region.redish markup.error.sublime_linter|dot",
"SL.cpplint.Highlights.|ea1452cc84d26a63488d7e361cbc50ccb5dc155b63299c444d53ba28e801f2b7|region.redish markup.error.sublime_linter|32"
],
"c_time": [
128,
3,
99,
100,
97,
116,
101,
116,
105,
109,
101,
10,
100,
97,
116,
101,
116,
105,
109,
101,
10,
113,
0,
67,
10,
7,
226,
10,
23,
17,
32,
48,
14,
192,
127,
113,
1,
133,
113,
2,
82,
113,
3,
46
],
"syntax": "Packages/C++/C++.sublime-syntax",
"tab_size": 4,
"translate_tabs_to_spaces": true
},
"translation.x": 0,
"translation.y": 0,
"zoom_level": 1
},
"stack_index": 7,
"type": "text"
}
]
}
],
"incremental_find": {
"height": 27
},
"input": {
"height": 106
},
"layout": {
"cells": [
[
0,
0,
1,
1
],
[
1,
0,
2,
1
]
],
"cols": [
0,
0.5,
1
],
"rows": [
0,
1
]
},
"menu_visible": true,
"output.SublimeLinter": {
"height": 160
},
"output.exec": {
"height": 151
},
"output.find_results": {
"height": 0
},
"output.git": {
"height": 171
},
"output.mdpopups": {
"height": 0
},
"pinned_build_system": "Packages/User/py36.sublime-build",
"project": "SP4E18.sublime-project",
"replace": {
"height": 50
},
"save_all_on_build": true,
"select_file": {
"height": 0,
"last_filter": "",
"selected_items": [
[
"",
"paper figures\\fig6.py"
],
[
"git stats",
"scripts\\plot_gating_kinetics.py"
]
],
"width": 0
},
"select_project": {
"height": 0,
"last_filter": "",
"selected_items": [],
"width": 0
},
"select_symbol": {
"height": 357,
"last_filter": "",
"selected_items": [],
"width": 374
},
"selected_group": 1,
"settings": [],
"show_minimap": false,
"show_open_files": false,
"show_tabs": true,
"side_bar_visible": true,
"side_bar_width": 234,
"status_bar_visible": true,
"template_settings": []
}
c4science · Help