Diffusion SP4E-TB-TL-FR (master) History

R7571/work
master0eb90ccd7f9e98952260875…

Dec 19 2018

added notes about management about Compute objects in python in the README.
0eb90ccd7f9e
·tlemaire on Dec 19 2018, 16:56.
removed shared pointer binding of factory classes (no need for that since…
60b6d1c90180
·tlemaire on Dec 19 2018, 16:32.
corrected binders for private attributes of ComputeTemperature. Added reference…
956e85e516cb
·tlemaire on Dec 19 2018, 15:54.
added repr method to ComputeTemperature binding
8aadcbb3c1f6
·tlemaire on Dec 19 2018, 13:14.

Dec 18 2018

added CsvWriter binding and completed SystemEvolution binding. code compiles…
8ac9e081bf69
·tlemaire on Dec 18 2018, 20:54.
replaced cc files by hh files in include statements of pypart_pybind.cpp. added…
57ec417716ff
·tlemaire on Dec 18 2018, 20:20.
merged conflicts in pypart_pybind.cc
f183e0755bc4
·tlemaire on Dec 18 2018, 17:57.
First implementation of ex2.1 and ex2.3 (to be verified)
f69dfb9c4b7f
·Flavio Raschellà on Dec 18 2018, 17:51.
added README file commenting on role of overloaded createSimulation method in…
fb35b088b5ac
·tlemaire on Dec 18 2018, 17:45.
Implement classes from ex1.1 in pypart_pybind.cpp
6762203b5828
·Flavio Raschellà on Dec 18 2018, 17:05.
Implement first draft of ex1.1
07f275ff05cc
·Flavio Raschellà on Dec 18 2018, 15:51.
Script initialized for everybody to start with
2e8b81cc61d8
·barjavel on Dec 18 2018, 14:42.
pypart_binding enhenced for starting file for the group
1f02d83cc145
·barjavel on Dec 18 2018, 14:28.
pypart_pybind.cpp implemented with initial COmpute and ComputeTemperature…
8a4a366dafa8
·barjavel on Dec 18 2018, 14:25.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
030d2c27f9c7
·tlemaire on Dec 18 2018, 14:10.
changed matrix and vector files to solve usual compiliing issues
65a222cfdf27
·tlemaire on Dec 18 2018, 14:09.
add fft.hh and test_fft.hh
adfc7b58c977
·Flavio Raschellà on Dec 18 2018, 13:56.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
b5d326e9bd44
·tlemaire on Dec 18 2018, 13:53.
manually installed pybind11 into my work/week14/particle-pybind/starting_point…
77fdace0ef40
·tlemaire on Dec 18 2018, 13:52.
Update CMakeList.txt + update pypart_pybind.cpp
46271dfdabe0
·Flavio Raschellà on Dec 18 2018, 13:50.
Making CMakeList.txt and pypart.cpp first structure
81abdddfcc4c
·Flavio Raschellà on Dec 18 2018, 12:50.
copied week14 exercise into work directory.
1a9e5913cfd1
·tlemaire on Dec 18 2018, 11:20.
added python script, and created hh an cc files for…
d34696137e2d
·tlemaire on Dec 18 2018, 10:10.
cpoied week13 exercise into work directory
c7a92d782f51
·tlemaire on Dec 18 2018, 09:07.

Dec 14 2018

completed README file.
4c1130162ff3
·tlemaire on Dec 14 2018, 02:38.
corrected radius equation in generate_input.py
275f3da87159
·tlemaire on Dec 14 2018, 01:45.
corrected error in eq. temp. field in generate_input.py, scaling factor in…
d2922e874450
·tlemaire on Dec 14 2018, 01:30.

Dec 13 2018

removed std::cout statements.
9787c52818b2
·tlemaire on Dec 13 2018, 23:41.
changed computeTemperature object to set invariant fields upon construction…
c6da6a1ef490
·tlemaire on Dec 13 2018, 21:43.
factorized code in test_heat_equation test script. improved…
83ca3f4e3f47
·tlemaire on Dec 13 2018, 15:36.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
a2d594a9cb7d
·tlemaire on Dec 13 2018, 14:31.
normalized space dimension for test conditions in generate_input script
3f64baf160e1
·tlemaire on Dec 13 2018, 14:31.
Implementation and addition of compute temperature boundaries to set the…
298c2a27a2c2
·barjavel on Dec 13 2018, 14:29.
Readme completed and line test added in the test_heat_equation_fft.cc file
83e9b9acf5d2
·barjavel on Dec 13 2018, 13:40.
README file partially completed to answer homerwork's questions
6e1546709ed5
·barjavel on Dec 13 2018, 12:05.

Dec 11 2018

created test for computeFrequencies in test_fft.cc (with adapted python script).
10307a3573e9
·tlemaire on Dec 11 2018, 19:00.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
5236b05f8049
·tlemaire on Dec 11 2018, 14:53.
improved memory usage of fft.hh wrapper. Redesigned generate_input script to…
50ce810a77e4
·tlemaire on Dec 11 2018, 14:53.
ReadMe file written to answer questions 1 to 3, rework on the compute…
6e62bce8f41a
·barjavel on Dec 11 2018, 14:23.
added extraction of real part of theta and hv matrices in generate_input script…
650d60b8685d
·tlemaire on Dec 11 2018, 11:14.
removed non-ascii characters from generate_input.py
ed32ef80f840
·tlemaire on Dec 11 2018, 10:49.
renamed all variables in generate_input.py and compute_temperature.cc to match…
b5a96b3011dc
·tlemaire on Dec 11 2018, 10:45.
modified generate_input script to generate equilibrium initial temperature…
649f607e3059
·tlemaire on Dec 11 2018, 10:04.

Dec 10 2018

updated generate_input script with better arguments parsing, vectors generation…
3bf5f1efc20e
·tlemaire on Dec 10 2018, 19:35.

Dec 9 2018

Adding computation of matrix dimension and division of freq vector in…
2c259d37422a
·Flavio Raschellà on Dec 9 2018, 18:22.
Update README.md with recent changes in the code and with answer to question 4.4
765dd1835c93
·Flavio Raschellà on Dec 9 2018, 17:58.
Adjust constant variables' values in generate_input.py
430d42ba4c2e
·Flavio Raschellà on Dec 9 2018, 17:39.
Implement heating_distribution +-N in generate_input.py and division by L in 2D…
5774bf9fcf68
·Flavio Raschellà on Dec 9 2018, 16:27.
Adjust hv output from generate_input.py + hv implementation in…
89c574fecf07
·Flavio Raschellà on Dec 9 2018, 15:25.
Solve number of particles, csv generator,and heat_distribution equations issues…
363729b3f197
·Flavio Raschellà on Dec 9 2018, 13:51.

Dec 8 2018

Implementing of a meaning full equation for the particle's properties with pho…
a20b8e79dd60
·barjavel on Dec 8 2018, 21:38.
added the Heat distribution and corresponding elemtents
2cc0117120ca
·barjavel on Dec 8 2018, 17:18.
Generate_input modified with implementation of defined position in grid and…
353be0f9d8dc
·barjavel on Dec 8 2018, 12:20.

Dec 7 2018

Updated 4.4 with boundary condition
bbc9499c04d2
·barjavel on Dec 7 2018, 23:14.
Python script for Heating distribution implemented
a230cb1b8f92
·barjavel on Dec 7 2018, 23:05.
Implementation of computetemperature test Q4.2
515234d7c6ce
·barjavel on Dec 7 2018, 21:46.
adjust fft transform in ComputeTemperature::compute
47965603ed8a
·Flavio Raschellà on Dec 7 2018, 21:24.
Implementation of Q4.1
a697af971d6b
·Flavio Raschellà on Dec 7 2018, 20:37.
Update test_fftfreq.py and solve Q3.3
20b93fb52ac3
·Flavio Raschellà on Dec 7 2018, 17:47.
Update test_fftfreq.py for computation of frequency coordinates
0e9cbcf90fa5
·Flavio Raschellà on Dec 7 2018, 16:57.
Merge branch 'master' of ssh://c4science.ch/diffusion/7571/sp-e-tb-tl
c21ed88966ad
·Flavio Raschellà on Dec 7 2018, 09:54.
Improving performance of fft.hh using malloc and fftLibrary-built methods
370156c1fa1d
·Flavio Raschellà on Dec 7 2018, 09:54.

Dec 6 2018

Exercise 4.1 partly implemented, temparature matrix and its Fourier transform…
7f2d0d6448db
·barjavel on Dec 6 2018, 17:15.
Upload 1D test for computeFrequency in fft.hh
b1e25cba605e
·Flavio Raschellà on Dec 6 2018, 15:57.
Adjusting CMakeLists.txt linking fft library directly to part library
890012d748d1
·Flavio Raschellà on Dec 6 2018, 13:24.
Comments added for Doxygen doc building
1fccb9b82e82
·barjavel on Dec 6 2018, 13:16.

Dec 5 2018

implemented computeFrequencies function in fft.hh (TO BE TESTED).
a33d57ecba00
·tlemaire on Dec 5 2018, 18:53.
implemented itransform wrapper in fft.hh and associated test in test_fft.cc…
4405995e906c
·tlemaire on Dec 5 2018, 18:32.
fixed error raised on explicit specialization of iterator_traits (workaround…
1de49de6b79f
·tlemaire on Dec 5 2018, 17:30.
solved FFTW library linking issue for fft_test. forward fft test running OK.
0cef1a9b9441
·tlemaire on Dec 5 2018, 17:19.
corrected for loop assignments in fft.hh
c5948792deda
·tlemaire on Dec 5 2018, 14:46.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
1c422c671c49
·tlemaire on Dec 5 2018, 14:42.
implemented fft transform method (to be tested)
44db44860f8e
·tlemaire on Dec 5 2018, 14:42.

Dec 4 2018

Modified CMakelist to make it work
cdcfc167c0d8
·barjavel on Dec 4 2018, 14:37.
Merge branch 'w12ex2_FR'
837e819b5c84
·Flavio Raschellà on Dec 4 2018, 14:32.
Adding Library FFTW on CMAKE (to review)
f7ae1f7968d0
·branch: w12ex2_FR
·Flavio Raschellà on Dec 4 2018, 14:31.
commented on additional classes of this week in the README file.
a05c6e93b760
·tlemaire on Dec 4 2018, 14:25.
Cmakelist modified to in clue if needed fftw
ad37fc09e4a9
·barjavel on Dec 4 2018, 14:23.
Add Documentation with the Doxyfile
72573ee5045f
·Flavio Raschellà on Dec 4 2018, 11:48.
work directory modified for week12
42a55841ee13
·barjavel on Dec 4 2018, 11:35.

Nov 27 2018

Resolved merge conflict
52faafbb8fbe
·barjavel on Nov 27 2018, 15:51.
Modifications done to G so that exercise 1 works
1e08d709c31e
·barjavel on Nov 27 2018, 15:47.
pushing work during class
d743575e31af
·Flavio Raschellà on Nov 27 2018, 15:10.
Added work week11 directory
fab554dde2a7
·barjavel on Nov 27 2018, 13:27.
COmpute boundary, vector operators updated model working perfectly
a96c24d89ede
·barjavel on Nov 27 2018, 13:24.
Exercise 4 implemented and working
9b745535be35
·barjavel on Nov 27 2018, 10:41.
Tested but error linker
96725fafa761
·barjavel on Nov 27 2018, 09:54.
Exercise 4, implementation of vertical gravity and dissipation, not tested yet
9273fc9fb49c
·barjavel on Nov 27 2018, 09:22.

Nov 20 2018

Compute contact changed and trajectories evaluated in paraview
fff51da09eb3
·barjavel on Nov 20 2018, 17:24.
delete std::cout from verlet
c4d4447b693a
·Flavio Raschellà on Nov 20 2018, 17:05.
adjust penalty factor
1d312d23c336
·Flavio Raschellà on Nov 20 2018, 16:59.
merging commits
70978a3ba845
·barjavel on Nov 20 2018, 16:05.
update generate_input.py
d6a5020e2bfe
·Flavio Raschellà on Nov 20 2018, 15:59.
Implementation of ComputeBoundary
d4be3fb05eba
·Flavio Raschellà on Nov 20 2018, 15:50.
w10 implement ComputeContact::computePairInteraction
1f97d4ad4501
·Flavio Raschellà on Nov 20 2018, 14:38.
add exercise from class week10
7260a1a28c0c
·Flavio Raschellà on Nov 20 2018, 13:08.

Nov 16 2018

implemented working test fixtures for CSV reader/writer (test_csv.cc).
636477bf9799
·tlemaire on Nov 16 2018, 19:49.

Nov 15 2018

implemented test feature for csv reader in separate file (gtest not working…
d4368b086ae9
·tlemaire on Nov 15 2018, 18:31.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
9904e76c097b
·barjavel on Nov 15 2018, 17:21.
Paraview state for trajectories saved and initialization of forces implemented…
1f433e21a966
·barjavel on Nov 15 2018, 17:21.