Homec4science
Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (Bashardoust_SystCoord) Browse

R8218/CT/private/dicom_prep_metadata.m
3a3dd5b033deBashardoust_SystCoord

Last Change
Raw File

dicom_prep_metadata.m
View Options

function metadata = dicom_prep_metadata(IOD_UID, metadata, X, map, txfr, useMetadataBitDepths, dictionary)
%DICOM_PREP_METADATA Set the necessary metadata values for this IOD.
% METADATA = DICOM_PREP_METADATA(UID, METADATA, X, MAP, TXFR) sets all
% of the type 1 and type 2 metadata derivable from the image (e.g. bit
% depths) or that must be unique (e.g. UIDs). This function also
% builds the image pixel data.
% Copyright 1993-2014 The MathWorks, Inc.
switch (IOD_UID)
case '1.2.840.10008.5.1.4.1.1.2'
metadata(1).(dicom_name_lookup('0008', '0060', dictionary)) = 'CT';
metadata = dicom_prep_ImagePixel(metadata, X, map, txfr, useMetadataBitDepths, dictionary);
metadata = dicom_prep_FrameOfReference(metadata, dictionary);
metadata = dicom_prep_SOPCommon(metadata, IOD_UID, dictionary);
metadata = dicom_prep_FileMetadata(metadata, IOD_UID, txfr, dictionary);
metadata = dicom_prep_GeneralStudy(metadata, dictionary);
metadata = dicom_prep_GeneralSeries(metadata, dictionary);
metadata = dicom_prep_GeneralImage(metadata, dictionary);
case '1.2.840.10008.5.1.4.1.1.4'
metadata(1).(dicom_name_lookup('0008', '0060', dictionary)) = 'MR';
metadata = dicom_prep_ImagePixel(metadata, X, map, txfr, useMetadataBitDepths, dictionary);
metadata = dicom_prep_FrameOfReference(metadata, dictionary);
metadata = dicom_prep_SOPCommon(metadata, IOD_UID, dictionary);
metadata = dicom_prep_FileMetadata(metadata, IOD_UID, txfr, dictionary);
metadata = dicom_prep_GeneralStudy(metadata, dictionary);
metadata = dicom_prep_GeneralSeries(metadata, dictionary);
metadata = dicom_prep_GeneralImage(metadata, dictionary);
case '1.2.840.10008.5.1.4.1.1.4.1'
metadata(1).(dicom_name_lookup('0008', '0060', dictionary)) = 'MR';
metadata = dicom_prep_ImagePixel(metadata, X, map, txfr, useMetadataBitDepths, dictionary);
metadata = dicom_prep_FrameOfReference(metadata, dictionary);
metadata = dicom_prep_SOPCommon(metadata, IOD_UID, dictionary);
metadata = dicom_prep_FileMetadata(metadata, IOD_UID, txfr, dictionary);
metadata = dicom_prep_GeneralStudy(metadata, dictionary);
metadata = dicom_prep_GeneralSeries(metadata, dictionary);
metadata = dicom_prep_GeneralImage(metadata, dictionary);
metadata = dicom_prep_MRMultiFrame(metadata, X, txfr, dictionary);
case '1.2.840.10008.5.1.4.1.1.7'
name = dicom_name_lookup('0008', '0060', dictionary);
if (~isfield(metadata, name))
metadata(1).(name) = 'OT';
end
metadata = dicom_prep_ImagePixel(metadata, X, map, txfr, useMetadataBitDepths, dictionary);
metadata = dicom_prep_FrameOfReference(metadata, dictionary);
metadata = dicom_prep_SOPCommon(metadata, IOD_UID, dictionary);
metadata = dicom_prep_FileMetadata(metadata, IOD_UID, txfr, dictionary);
metadata = dicom_prep_GeneralStudy(metadata, dictionary);
metadata = dicom_prep_GeneralSeries(metadata, dictionary);
metadata = dicom_prep_GeneralImage(metadata, dictionary);
metadata = dicom_prep_SCImageEquipment(metadata, dictionary);
case {'1.2.840.10008.5.1.4.1.1.7.1'
'1.2.840.10008.5.1.4.1.1.7.2'
'1.2.840.10008.5.1.4.1.1.7.3'
'1.2.840.10008.5.1.4.1.1.7.4'}
name = dicom_name_lookup('0008', '0060', dictionary);
if (~isfield(metadata, name))
metadata(1).(name) = 'OT';
end
metadata = dicom_prep_ImagePixel(metadata, X, map, txfr, useMetadataBitDepths, dictionary);
metadata = dicom_prep_FrameOfReference(metadata, dictionary);
metadata = dicom_prep_SOPCommon(metadata, IOD_UID, dictionary);
metadata = dicom_prep_FileMetadata(metadata, IOD_UID, txfr, dictionary);
metadata = dicom_prep_GeneralStudy(metadata, dictionary);
metadata = dicom_prep_GeneralSeries(metadata, dictionary);
metadata = dicom_prep_GeneralImage(metadata, dictionary);
metadata = dicom_prep_SCImageEquipment(metadata, dictionary);
% This needs to come last.
metadata = dicom_prep_SCMultiFrame(metadata, X, dictionary);
checkSC(IOD_UID, metadata, X, dictionary);
otherwise
% Unsupported SOP Class in verification mode. Display a message.
if (usejava('Desktop') && desktop('-inuse'))
docRef = '<a href="matlab:doc(''dicomwrite'')">help dicomwrite</a>';
else
docRef = 'help dicomwrite';
end
error(message('images:dicom_prep_metadata:unsupportedClass', ...
IOD_UID, docRef))
end
function checkSC(IOD_UID, metadata, X, dictionary)
%checkSC Make sure that the metadata matches what it should.
photometricInterp = metadata.(dicom_name_lookup('0028','0004', dictionary));
switch (IOD_UID)
case '1.2.840.10008.5.1.4.1.1.7.1'
if (metadata.(dicom_name_lookup('0028', '0100', dictionary)) ~= 1)
error(message('images:dicom_prep_metadata:bitDepthForLogicalSC', IOD_UID, 1))
elseif (size(X,3) ~= 1)
error(message('images:dicom_prep_metadata:numSamplesForLogicalSC', IOD_UID))
elseif (~isequal(photometricInterp, 'MONOCHROME2'))
error(message('images:dicom_prep_metadata:photoInterpForLogicalSC', IOD_UID))
end
case '1.2.840.10008.5.1.4.1.1.7.2'
if (metadata.(dicom_name_lookup('0028', '0100', dictionary)) ~= 8)
error(message('images:dicom_prep_metadata:bitDepthFor8bitSC', IOD_UID, 8))
elseif (size(X,3) ~= 1)
error(message('images:dicom_prep_metadata:numSamplesFor8bitSC', IOD_UID))
elseif (~isequal(photometricInterp, 'MONOCHROME2'))
error(message('images:dicom_prep_metadata:photoInterpFor8bitSC', IOD_UID))
end
case '1.2.840.10008.5.1.4.1.1.7.3'
if (metadata.(dicom_name_lookup('0028', '0100', dictionary)) ~= 16)
error(message('images:dicom_prep_metadata:bitDepthFor16bitSC', IOD_UID, 16))
elseif (size(X,3) ~= 1)
error(message('images:dicom_prep_metadata:numSamplesFor16bitSC', IOD_UID))
elseif (~isequal(photometricInterp, 'MONOCHROME2'))
error(message('images:dicom_prep_metadata:photoInterpFor16bitSC', IOD_UID))
end
case '1.2.840.10008.5.1.4.1.1.7.4'
if (metadata.(dicom_name_lookup('0028', '0100', dictionary)) ~= 8)
error(message('images:dicom_prep_metadata:bitDepthForColorSC', IOD_UID, 8))
elseif (size(X,3) ~= 3)
error(message('images:dicom_prep_metadata:numSamplesForColorSC', IOD_UID))
elseif (~isequal(photometricInterp, 'RGB') && ...
~isequal(photometricInterp, 'YBR_FULL_422'))
error(message('images:dicom_prep_metadata:photoInterpForColorSC', IOD_UID))
end
end
c4science · Help