R8218/loadDicomCTscan.m
f3149ac75f22Bashardoust_SystCoord

loadDicomCTscan.m
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			% This script tries to load any CT dicom scan

			dicomDir = '/Volumes/shoulder/data/N/1/8/N180-753671/CT-N180-753671-1/dicom'; % Not working
			%dicomDir = '/Volumes/shoulder/data/N/0/2/N29-40883/CT-N29-40883-1/dicom'; % Working

			%%
			dicomFiles = dir(dicomDir);
			dicomFiles = dicomFiles(~ismember({dicomFiles.name},{'.','..'}));

			filename = fullfile(dicomFiles(10).folder, dicomFiles(10).name);

			try
			dicomInfoRes = dicominfo(filename, 'UseVRHeuristic', true);
			dicomInfoError = false;
			disp('dicominfo ok');
			% If dicominfo didn't worked, try with matlab function dicomdisp
			catch ME
			dicomInfoError = true;
			disp('dicominfo error --> using dicomdisp');
			disp(ME.message);
			dicomdispStr = evalc('dicomdisp(filename)');
			end
			%%
			a=1;
			b=2;
			X = dicomread(filename);

			if ~dicomInfoError
			X = dicomread(filename);
			imshow(X);
			source = dicomDir;
			[V,spatial,dim] = dicomreadVolume(source); % Should be transformed to match Elham segmentation code
			end


			%%
			tic;
			source = dicomDir;
			[V,spatial,dim] = dicomreadVolume(source); % Should be transformed to match Elham segmentation code
			toc

			%%
			Volume = squeeze(V); % Remove singleton dimension
			% We shoudl set a grid before using isosurface
			[fo,vo] = isosurface(Volume,150); % Could be used in measureSCase when no manual segmentation
			figure
			p1 = patch('Faces', fo, 'Vertices', vo); % draw the outside of the volume
			p1.FaceColor = 'red';
			p1.EdgeColor = 'none';


			dicomBrowser(dicomDir);