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Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (aterrier-plotUpdate) Browse

R8218/ShoulderCase/@Muscle/Muscle.m
75435e547e69aterrier-plotUpdate

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Muscle.m
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classdef Muscle < handle
% The Muscle class is linked to a segmented muscle file (a mask)
% and to the slice it has been segmented out of.
%
% Then, this class can measured values linked to the PCSA and the
% muscle's degeneration.
properties
name = '';
segmentationSet = '';
sliceName = '';
PCSA = [];
atrophy = [];
fat = [];
osteochondroma = [];
degeneration = [];
end
properties (Hidden = true)
dataPath = '';
maskDataPath = '';
contourDataPath = '';
container = [];
end
methods
function obj = Muscle(musclesContainer,muscleName,slicesWithMuscleName)
obj.container = musclesContainer;
obj.name = muscleName;
obj.sliceName = slicesWithMuscleName;
end
function propagateDataPath(obj)
% Update current dataPath
% Propagate the path to objects in properties
obj.dataPath = fullfile(obj.container.dataPath,obj.name);
obj.maskDataPath = fullfile(obj.dataPath,'mask');
obj.contourDataPath = fullfile(obj.dataPath,'contour');
if not(isfolder(obj.dataPath))
mkdir(obj.dataPath);
end
if not(isfolder(obj.maskDataPath))
mkdir(obj.maskDataPath);
end
if not(isfolder(obj.contourDataPath))
mkdir(obj.contourDataPath);
end
end
function output = getValues(obj)
output = cellfun(@(property) obj.(property), properties(obj),...
'UniformOutput',false);
end
function measure(obj,segmentationSet)
obj.segmentationSet = segmentationSet;
measurer = MuscleMeasurer(obj);
obj.PCSA = measurer.getPCSA;
obj.atrophy = measurer.getRatioAtrophy;
obj.fat = measurer.getRatioFat;
obj.osteochondroma = measurer.getRatioOsteochondroma;
obj.degeneration = measurer.getRatioDegeneration;
end
end
end
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