RotatorCuff.m
267d777c8e23aterrier-plotUpdate

RotatorCuff.m
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			classdef RotatorCuff < handle

			properties
			SC
			SS
			IS
			TM
			anteroPosteriorImbalance = nan;

			shoulder;
			end

			methods
			function obj = RotatorCuff(shoulder)
			obj.shoulder = shoulder;

			obj.SC = Muscle(obj, "SC");
			obj.SS = Muscle(obj, "SS");
			obj.IS = Muscle(obj, "IS");
			obj.TM = Muscle(obj, "TM");

			[~, ~] = mkdir(obj.dataPath);
			[~, ~] = mkdir(obj.dataSlicesPath);
			end

			function output = dataPath(obj)
			output = fullfile(obj.shoulder.dataPath, "muscles");
			end

			function output = dataSlicesPath(obj)
			output = fullfile(obj.dataPath, "oblique_slices");
			end

			function output = summary(obj)
			summary = [...
			getTabulatedProperties(obj.SC);...
			getTabulatedProperties(obj.SS);...
			getTabulatedProperties(obj.IS);...
			getTabulatedProperties(obj.TM)...
			];
			output = summary;
			end

			function sliceAndSegment(obj, varargin)
			obj.createSliceMatthieu();
			obj.segmentMuscles("rotatorCuffMatthieu", "autoMatthieu");
			end

			function output = measureSecond(obj)
			% Call methods that can be run after measureFirst() methods has been run
			% by all ShoulderCase objects.
			success = Logger.timeLogExecution(...
			"Rotator cuff antero-posterior imbalance: ",...
			@(obj) obj.measureAnteroPosteriorImbalance(), obj);
			end
			end

			end