rebuildDatabaseMuscleMeasurements.m
3a3dd5b033deaterrier-plotUpdate

rebuildDatabaseMuscleMeasurements.m
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			% This script builds a cell array listing all caseIDs in the CT database
			% for which an Amira folder exists and scapula measurements can be
			% computed. Then computes scapula anatomical data for these cases.

			CTDatabaseLocation = 'Z://data'; % Location of the CT database
			CaseType = ['P';'N']; % Folders to be reconstructed

			CaseIDsList = cell(0,0);

			for i=1:length(CaseType) %Loop
			for j=0:9
			for k=0:9
			listDirInCurrDir = dir([CTDatabaseLocation '/' CaseType(i) '/' int2str(j) '/' int2str(k) '/' CaseType(i) '*']);
			if (~isempty(listDirInCurrDir))
			for m=1:length(listDirInCurrDir)
			if exist([CTDatabaseLocation '/' CaseType(i) '/' int2str(j) '/' int2str(k) '/' listDirInCurrDir(m).name '/CT-' listDirInCurrDir(m).name '-1/muscles'],'dir') == 7 %if a folder "muscles" exist, the case ID is added to the list
			CaseIDsList{end+1,1} = strtok(listDirInCurrDir(m).name,'-');
			end
			end
			end
			end
			end
			end

			degenerationAll(CaseIDsList,[{'IS'};{'SC'};{'SS'};{'TM'}]);