exportMusclesFibresForSlicer.m
d628ee835049master

exportMusclesFibresForSlicer.m
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			function exportMusclesFibresForSlicer(obj)
			color.SC = "blue";
			color.SS = "red";
			color.IS = "green";
			color.TM = "yellow";

			for muscleName = ["SC" "SS" "IS" "TM"]
			slicerExporter = SlicerMarkupsExporter;
			muscle = obj.(muscleName);
			for i = 1:size(muscle.centroid, 1)
			fibre = SlicerMarkupsLine;

			centroid = SlicerControlPoint("centroid_" + i, muscle.centroid(i,:));
			centroid.locked = true;
			fibre.addControlPoint(centroid);

			forceApplicationPoint = SlicerControlPoint(...
			"contact_point_" + i, muscle.forceApplicationPoint(i,:));
			forceApplicationPoint.locked = true;
			fibre.addControlPoint(forceApplicationPoint);

			fibre.setColor(color.(muscleName));
			slicerExporter.addMarkups(fibre);
			end
			outputFilename =...
			join(["fibres" muscle.getFullName() obj.shoulder.side ".mrk.json"], "_");
			slicerExporter.export(...
			fullfile(obj.shoulder.SCase.dataSlicerPath, outputFilename));
			end
			end