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R8218/ShoulderCase/@ShoulderCasePlotter/plot.m
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plot.m
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function plot(obj)
% set method colors
autoColors = {'b','cyan'};
manualColors = {'#D95319','#ffcc00'};
% plot scapula data
axes(obj.axesHandle('scapula'));
hold on;
grid on
axis vis3d
auto = containers.Map;
try
auto('landmarks') = obj.SCase.shoulders.(obj.shoulderSide).auto.scapula.plotLandmarks(autoColors{2},autoColors{2});
end
try
auto('scapula surface') = obj.SCase.shoulders.(obj.shoulderSide).auto.scapula.plotSurface(autoColors{1},autoColors{1});
end
try
auto('glenoid surface') = obj.SCase.shoulders.(obj.shoulderSide).auto.scapula.glenoid.plot();
end
try
auto('coordinate system') = obj.SCase.shoulders.(obj.shoulderSide).auto.scapula.coordSys.plot(autoColors{1},false);
end
manual = containers.Map;
try
manual('landmarks') = obj.SCase.shoulders.(obj.shoulderSide).manual.scapula.plotLandmarks(manualColors{2},manualColors{2});
end
try
manual('scapula surface') = obj.SCase.shoulders.(obj.shoulderSide).manual.scapula.plotSurface(manualColors{1},manualColors{1});
end
try
manual('glenoid surface') = obj.SCase.shoulders.(obj.shoulderSide).manual.scapula.glenoid.plot();
end
try
manual('coordinate system') = obj.SCase.shoulders.(obj.shoulderSide).manual.scapula.coordSys.plot(manualColors{1},false);
end
outliersNormLimit = 10;
difference = containers.Map;
try
difference('difference') = obj.SCase.plotManualAutoDifferences(outliersNormLimit);
end
% plot centered coordinate system
axes(obj.axesHandle('centered coordinate system'));
hold on;
grid on
axis vis3d
try
auto('centered coordinate system') = obj.SCase.shoulders.(obj.shoulderSide).auto.scapula.coordSys.plot(autoColors{1},true);
end
try
manual('centered coordinate system') = obj.SCase.shoulders.(obj.shoulderSide).manual.scapula.coordSys.plot(manualColors{1},true);
end
% plot muscles segmentation
axes(obj.axesHandle('auto muscles'));
title('Auto segmentation with auto landmarks');
hold on;
try
auto('rotator cuff') = obj.SCase.shoulders.(obj.shoulderSide).auto.rotatorCuff.plot();
end
axes(obj.axesHandle('scapula'))
try
auto("rotator cuff") = [auto("rotator cuff") obj.SCase.shoulders.(obj.shoulderSide).auto.rotatorCuff.plot3()];
end
try
auto("rotator cuff") = [auto("rotator cuff") obj.SCase.shoulders.(obj.shoulderSide).auto.humerus.plot()];
end
axes(obj.axesHandle('manual muscles'));
title('Auto segmentation with manual landmarks');
hold on;
try
manual('rotator cuff') = obj.SCase.shoulders.(obj.shoulderSide).manual.rotatorCuff.plot();
end
axes(obj.axesHandle('scapula'))
try
manual("rotator cuff") = [manual("rotator cuff") obj.SCase.shoulders.(obj.shoulderSide).manual.rotatorCuff.plot3()];
end
try
manual("rotator cuff") = [manual("rotator cuff") obj.SCase.shoulders.(obj.shoulderSide).manual.humerus.plot()];
end
% store the data handles
obj.plotHandle.auto = auto;
obj.plotHandle.manual = manual;
obj.plotHandle.difference = difference;
end
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