Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
masterb23e1f95940fece3b9df2ed…

Jan 10 2020

reorganize measureSCase loops and extend the 'auto' loop
b23e1f95940f
·boubat on Jan 10 2020, 11:42.

Jan 7 2020

dicominfopath now correctly chosen pointing to the dicom file in the middle of…
6864e678a34d
·boubat on Jan 7 2020, 10:09.

Dec 20 2019

measureScase now auto computes the RC muscles degenration, and exports meta…
d19a22d656dc
·boubat on Dec 20 2019, 14:46.

Aug 22 2019

The catch now return a correct outputArg to detect that DICOM files couldn't be…
24267f0a0d88
·boubat on Aug 22 2019, 10:31.

Aug 9 2019

Modification in arguments handling by measureSCase. rawFromExcel changed back…
81c136978cc4
·boubat on Aug 9 2019, 13:54.

Aug 8 2019

Fixed and modified according to A.Terrier comments
2ede99566008
·boubat on Aug 8 2019, 17:47.

Jul 31 2019

fopen() error 'fixed'. (No, apparently you can't fopen a file already opened in…
896b29123d60
·boubat on Jul 31 2019, 17:13.
Add whole database saving, upgrade measureSCase arguments verification, update…
48fb99446bf3
·boubat on Jul 31 2019, 16:54.
update logfile writing.
bca67b9e4cc2
·boubat on Jul 31 2019, 11:14.

Jul 30 2019

Filename changed back to 'anatomy.csv'
502abc4d511d
·boubat on Jul 30 2019, 16:51.
Some fixes and documentation. Ready to be merged.
8663a605763c
·boubat on Jul 30 2019, 16:48.
ShoulderCase.saveCSV becomes ShoulderCase.appendToCSV and have to be given a…
2edbc5ad5089
·boubat on Jul 30 2019, 12:56.
rawFromExcel can now be called on a linux system (e.g lbovenus.epfl.ch). Little…
b75dd8c49177
·boubat on Jul 30 2019, 12:22.
listSCase fixed and commented
82d00ff08110
·boubat on Jul 30 2019, 10:48.
small updates
fd6606e5d5fe
·boubat on Jul 30 2019, 10:29.
Revert "small updates"
be8ed18438e7
·boubat on Jul 30 2019, 10:12.
small updates
abcd19405ed2
·boubat on Jul 30 2019, 10:06.

Jul 29 2019

small correction in ShoulderCase.saveCSV
3e81587dadce
·boubat on Jul 29 2019, 17:27.
Add file closing in ShoulderCase.saveCSV
530f732efce3
·boubat on Jul 29 2019, 17:25.
implementation of ShoulderCase.saveCSV method
c3f112e6da73
·boubat on Jul 29 2019, 17:22.
Add more detailed error message and the check for updateCalculations condition
6584e4c2320b
·boubat on Jul 29 2019, 16:08.
Add a few comments and delete the former code
f518514550ef
·boubat on Jul 29 2019, 15:46.
The arguments available for measureSCase are now: 'UpdateGlenoidDensity'…
3ff6ec64c458
·boubat on Jul 29 2019, 15:34.
Revert "The arguments available for measureSCase are now…
7a04e1267d56
·boubat on Jul 29 2019, 15:32.
The arguments available for measureSCase are now: 'UpdateGlenoidDensity'…
c48d5c726896
·boubat on Jul 29 2019, 15:28.
add details about SCase errors
fdc561c14bbf
·boubat on Jul 29 2019, 13:22.
Erase redundant condition
56583bef420d
·boubat on Jul 29 2019, 10:01.
Initialisation. Add config file
83e825bae9a9
·boubat on Jul 29 2019, 09:35.

Jul 25 2019

Merge branch 'master' of https://c4science.
8ed5ddd994cb
·aterrier on Jul 25 2019, 06:34.
Update glenoid.m to avoid error when glenoid surface is missing
fa5091109b13
·aterrier on Jul 25 2019, 06:32.

Jul 5 2019

Merge branch 'master' of https://c4science.
1d163de2f1fc
·tag: v0.0.0
·aterrier on Jul 5 2019, 23:36.
HumeruSphere.m corrected to get humerus lanmarks in amira dirtectory
7ac612db8877
·aterrier on Jul 5 2019, 23:34.

Jun 29 2019

Merge update
62cc6f27f9e0
·aterrier on Jun 29 2019, 23:43.
Inconcistency in humerus preventing pull
fdc3d314a9c8
·aterrier on Jun 29 2019, 23:29.
Small changes in measurSCase.m
33761c0c763e
·aterrier on Jun 29 2019, 23:21.
Error management for landmrks loading
05446cede36c
·aterrier on Jun 29 2019, 22:56.
Merge branch 'master' of https://c4science.
ed71d16061ef
·aterrier on Jun 29 2019, 22:54.
Samll change in measureSCase
554c62397c32
·aterrier on Jun 29 2019, 22:54.
Merge branch 'master' of https://c4science.
0baa20c6be88
·aterrier on Jun 29 2019, 22:44.
Cleaned version of plot
1388e204762e
·aterrier on Jun 29 2019, 22:44.
Added shell command measureSCase.sh to run measureSCase.m in background
995f7eb061bc
·aterrier on Jun 29 2019, 01:26.

Jun 28 2019

Remove unwanted files
7c9e17a5edb9
·aterrier on Jun 28 2019, 23:32.
remove again log and config
8cf554ea38ec
·aterrier on Jun 28 2019, 23:27.
Merge last conflicts
99922bd71ad2
·aterrier on Jun 28 2019, 22:44.
Remove tic in ImportSCase/importSCase.m
3b90fac6ca44
·aterrier on Jun 28 2019, 17:30.
Add check in ShoulderCase/Scapula.m for landmarks file validity
19c3abdea327
·aterrier on Jun 28 2019, 16:59.

May 14 2019

log file removed
7a41906b8b6f
·aterrier on May 14 2019, 16:15.
Add test for landmarks validity
2dca0c2cbf76
·aterrier on May 14 2019, 16:14.

Apr 29 2019

Merge branch 'master' of https://c4science.
b73184e0ef93
·aterrier on Apr 29 2019, 16:28.
Corrected error message display in Scalula.load
bce397c2c4da
·aterrier on Apr 29 2019, 16:22.

Apr 5 2019

Commit changes fo merge
72d9e2cab548
·aterrier on Apr 5 2019, 10:29.
Local changes to be committed before pull
d350a5333495
·aterrier on Apr 5 2019, 10:15.
Unecessary files deleted
356c3b9257bc
·aterrier on Apr 5 2019, 10:13.

Apr 4 2019

Various files removed
9a4eda322b26
·solana on Apr 4 2019, 15:53.
Modified rawFromExcel to extend Excel DB lines to 1999
bac84cd8b778
·aterrier on Apr 4 2019, 15:36.
log files removed
c1c7d1818882
·aterrier on Apr 4 2019, 15:33.
Merge remote-tracking branch 'origin/AvoidMainExcelUpdate'
e2d0fb93c2ad
·aterrier on Apr 4 2019, 15:28.
ImportSCase.m update
84764b9475df
·solana on Apr 4 2019, 15:14.

Mar 1 2019

rm log/dicominfoSCase.log
f5d2e3742978
·aterrier on Mar 1 2019, 15:59.
rm config.txt and log/plotSCase.log
1216af3b2b45
·aterrier on Mar 1 2019, 15:58.
Merge remote-tracking branch 'origin/AvoidMainExcelUpdate'
8f55528a647d
·aterrier on Mar 1 2019, 15:49.
Changing folder and file names
440c61090605
·solana on Mar 1 2019, 15:07.
Protocol Updated: - Alternative with Amira removable
2dbe147a842f
·solana on Mar 1 2019, 15:04.

Feb 28 2019

working correctly. hand writing avoided completely Code to be cleaned
8417e3a4ef60
·solana on Feb 28 2019, 19:41.

Feb 27 2019

Many new errors solved and security added To do: 1. clean code and comments 2.
4bbb99750a2e
·solana on Feb 27 2019, 18:10.

Feb 21 2019

Merge remote-tracking branch 'origin/master'
f9107d13567f
·aterrier on Feb 21 2019, 16:15.
ImportSCase update:
b32ede3fa332
·solana on Feb 21 2019, 15:58.
Merge remote-tracking branch 'origin/master'
cef175fc5ff5
·solana on Feb 21 2019, 14:03.
Import Update simplifying the process
7cbe1d620eb3
·solana on Feb 21 2019, 12:13.

Feb 19 2019

Merge branch 'master' of https://c4science.
8cc1c6d5854c
·aterrier on Feb 19 2019, 17:27.
README update
9c3fd379e20f
·aterrier on Feb 19 2019, 17:26.
Merge remote-tracking branch 'origin/master'
4d64f29579dc
·aterrier on Feb 19 2019, 17:04.
README update
0807ef2eaedc
·aterrier on Feb 19 2019, 17:01.
README update
47af37f16079
·aterrier on Feb 19 2019, 16:57.
Merge remote-tracking branch 'origin/master'
2fc9fe06c004
·aterrier on Feb 19 2019, 16:51.
README updated
d9a0edeab625
·aterrier on Feb 19 2019, 16:31.
README updated
8a3e52d44ee8
·aterrier on Feb 19 2019, 16:08.

Feb 18 2019

Solving " vs ' error in listScase
4b85c99fbf8b
·solana on Feb 18 2019, 16:02.
Solving problem with "P219" vs 'P219' as arguments
5e7cd9775936
·solana on Feb 18 2019, 15:56.

Feb 17 2019

Text mofified by Alex
48005a8e7043
·aterrier on Feb 17 2019, 23:28.

Feb 14 2019

ImportSCase.m update: adding "dataDev\" selection for developers
bb605d15fc1a
·solana on Feb 14 2019, 18:45.
ImporSCase.m and SOP update. "Both shoulders" possibility added
cf783d293a55
·solana on Feb 14 2019, 18:21.
SOP updated to last ImportSCase.m
3bbd5f989485
·solana on Feb 14 2019, 16:01.
Importation SOP
e67293644fba
·solana on Feb 14 2019, 10:37.
DICOM CTs Importation Matlab GUI
56d39bc7a12c
·solana on Feb 14 2019, 09:46.

Feb 13 2019

request window optimized (data folder as argument of listSCase.m)
45d027363ed3
·solana on Feb 13 2019, 17:09.
config.txt completed with request window
0a544ab3f880
·solana on Feb 13 2019, 10:24.

Feb 6 2019

Add argument glenoidDensity in measureSCase
d882935b6dd5
·aterrier on Feb 6 2019, 09:24.

Feb 4 2019

Try-catch for error in dicomreadVolume
6cf54a954015
·aterrier on Feb 4 2019, 15:03.

Feb 3 2019

Glenoid.m and calcDensity.m modified from Paul Cimadomo to work with database
eb10ea532ee1
·aterrier on Feb 3 2019, 22:32.
Transform Glenoid.m in a folder @Glenoid to have a separate file for calDensity
5e81a03b9817
·aterrier on Feb 3 2019, 21:40.

Jan 29 2019

Remove ShoulderCase.m_bk
0d71a3c69253
·aterrier on Jan 29 2019, 10:29.
Merge branch 'master' of https://c4science.
e3f5d4164907
·aterrier on Jan 29 2019, 10:19.

Jan 28 2019

Readme updated
456c711fe431
·aterrier on Jan 28 2019, 21:47.

Jan 23 2019

Added angulusInferiorLocal in ShoulderCase/Scapula.m
ef63a90f530c
·aterrier on Jan 23 2019, 14:04.
Solved conflict in XLS_MySQL_DB/rawFromExcel.m
8a604c05e118
·aterrier on Jan 23 2019, 12:22.
Conflics with XLS_MySQL_DB/rawFromExcel.m solved
c357837ef79f
·aterrier on Jan 23 2019, 09:01.

Jan 16 2019

Error (typo?) corrected in scapula_addmeasure
0a867d923adf
·aterrier on Jan 16 2019, 09:53.
Add filename argument in function rawFromExcel
3702d81818d7
·aterrier on Jan 16 2019, 09:52.
Small (typo?) error corrected in XLS_MySQL_DB/patientFromExcel
36843b50dd5d
·aterrier on Jan 16 2019, 09:50.

Historymasterb23e1f95940fece3b9df2ed…

Jan 10 2020

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Jan 16 2019

History
masterb23e1f95940fece3b9df2ed…