Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
masterbdd284b71c15bb0e087fb7b…

Apr 28 2021

Merge branch 'centroid_plot' into 'master'
bdd284b71c15
·boubat on Apr 28 2021, 12:51.
feat: Add rotator cuff muscles centroid plot to segmentations plot.
7a96744b4d4e
·boubat on Apr 28 2021, 12:49.
Merge branch 'dicom_slicer_filter' into 'master'
66b76f663e5c
·boubat on Apr 28 2021, 12:42.
feat: Add gaussian filter for hard kernel CT scans.
896a4ab346a3
·boubat on Apr 28 2021, 11:32.

Apr 23 2021

Merge branch 'muscles_force_vector_modification' into 'master'
ca3a46b334f0
·boubat on Apr 23 2021, 13:42.
refactor: Change muscle force vector to represent muscular activation.
c749ea4a43ec
·boubat on Apr 23 2021, 13:41.

Apr 21 2021

Merge branch '3d_slicer_humerus_measurements' into 'master'
e5acaf18666b
·boubat on Apr 21 2021, 16:26.
feat: Add method to export humeral head fitted sphere to .ply file.
b523d4a048f5
·boubat on Apr 21 2021, 16:17.
feat: Add method to export a Sphere to .ply file thanks to BinarySphere.
ec80aabdeaff
·boubat on Apr 21 2021, 16:16.
feat: Add method to find new 3DSlicer folder of SCase.
6c84779ab0bc
·boubat on Apr 21 2021, 16:15.
feat: Add method to load humerus landmakrs from 3DSlicer markups files.
16f1b22821e2
·boubat on Apr 21 2021, 16:14.
Merge branch 'binary_volumes' into 'master'
f48c16da915d
·boubat on Apr 21 2021, 14:48.
feat: Add WIP side project about binary volumes in utils.
4a5672b6ac30
·boubat on Apr 21 2021, 14:44.
refactor: Remove disposable argument and fix char/string concatenation.
e5cc35f4bed9
·boubat on Apr 21 2021, 14:19.
refactor: Remove deprecated property.
90907cc260b3
·boubat on Apr 21 2021, 14:17.

Apr 16 2021

Merge branch 'rotator_cuff' into 'master'
bb709a4b5cec
·tag: v1.1.0
·boubat on Apr 16 2021, 16:24.
refactor: Change shoulder.muscles for shoulder.rotatorCuff.
47c2d59842b9
·boubat on Apr 16 2021, 16:17.
fix: Fix char/string issue.
fb2909401cda
·boubat on Apr 16 2021, 16:15.
refactor: Divide measure method into three.
afa310747b4f
·boubat on Apr 16 2021, 15:41.
feat: Add measurement of rotator cuff antero-posterior imbalance angle.
bab625d091e5
·boubat on Apr 16 2021, 15:24.
refactor: Make plot method ShoulderCasePlotter compliant.
eb0fc6f6f92a
·boubat on Apr 16 2021, 14:23.
fix: Add missing coefficient.
bed4780af6f2
·boubat on Apr 16 2021, 12:25.
feat: Add muscle measurement of insertion and force vector.
02ce2d5800e0
·boubat on Apr 16 2021, 12:24.
feat: Add Humerus plot method.
5eff374d8477
·boubat on Apr 16 2021, 10:43.
feat: Add plot methods to RotatorCuff.
04648c7bb765
·boubat on Apr 16 2021, 10:18.

Apr 15 2021

fix: Change variable names.
1356f5320c27
·Matthieu Boubat (lbovenus) on Apr 15 2021, 19:39.
feat: Implement RotatorCuff object and add it to Shoulder.
490ef61530c7
·boubat on Apr 15 2021, 19:22.
refactor: Change Muscle construction and add properties summary.
158ebe27c403
·boubat on Apr 15 2021, 19:19.
fix: Change folder name.
0cfd68911b42
·boubat on Apr 15 2021, 19:18.
refactor: Change char array for string.
e3ee0285f235
·boubat on Apr 15 2021, 19:17.
refactor: Change data path handling in Muscles related objects.
0b92d3ff947e
·boubat on Apr 15 2021, 18:09.
Merge branch 'reveal_objects_references' into 'master'
5fe8ec4aa946
·boubat on Apr 15 2021, 16:32.
refactor: Change the accessibility of objects' properties refering to other…
6b09b54993f4
·boubat on Apr 15 2021, 16:30.
Merge branch 'data_path' into 'master'
2fd89454f2d1
·boubat on Apr 15 2021, 16:19.
refactor: Make the Shoulder objects and children simpler and remove the need…
b6e0aee02633
·boubat on Apr 15 2021, 16:02.
refactor: Change data paths from being properties to method which remove the…
6b6233bb1687
·boubat on Apr 15 2021, 16:00.
Merge branch 'sphere_polar_tangent_point' into 'master'
e504ac2a0db1
·tag: v1.0.7
·boubat on Apr 15 2021, 13:02.
refactor: Change Sphere construction to be intialisable with center and radius.
18386f62dc97
·boubat on Apr 15 2021, 13:00.
feat: Add Sphere polar tangent point finding method.
ff30e63892ee
·boubat on Apr 15 2021, 12:59.
fix: Fix error in minus() when using an array as input.
4f23238a0e74
·boubat on Apr 15 2021, 12:57.

Apr 14 2021

refactor: Change muscle centroid and contour methods ownership from…
1f6f1a05884b
·boubat on Apr 14 2021, 19:12.
Merge branch 'vector_features_extension' into 'master'
5de2a22ec3fb
·boubat on Apr 14 2021, 18:39.
feat: Add three features to Vector.
8672dc70095e
·boubat on Apr 14 2021, 18:36.
Merge branch 'muscles_centroid_plot' into 'master'
fb70e1933436
·boubat on Apr 14 2021, 17:31.
feat: Add rotator cuff muscles contour and centroid 3D plots.
d88534adf210
·boubat on Apr 14 2021, 17:28.
Merge branch 'dicom_slice_pixel_coordinates' into 'master'
68fbf12d1bb0
·boubat on Apr 14 2021, 16:45.
feat: Add the slice's pixel coordinates export.
3cb9b325756b
·Matthieu Boubat (lbovenus) on Apr 14 2021, 16:42.

Apr 13 2021

Merge branch 'pezhman_excelExport' into 'master'
1835cad42086
·boubat on Apr 13 2021, 13:53.
feat: Add methods to export the whole SCases data into a table and save it in a…
597bb3fcfc31
·Pezhman Eghbalishamsabadi / boubat on Apr 13 2021, 13:53.

Apr 8 2021

fix: Remove typos.
760312dc35f9
·boubat on Apr 8 2021, 19:17.
Merge branch 'humeral_subluxation_index' into 'master'
6679286a66d7
·boubat on Apr 8 2021, 18:21.
feat: Add 3D humeral subluxation index measurement.
1145767ab72d
·boubat on Apr 8 2021, 18:19.
Merge branch 'glenoid_beta_angle' into 'master'
7724fb5169f7
·boubat on Apr 8 2021, 17:24.
feat: Add glenoid BETA angle measurement.
6f25c23e0c4e
·boubat on Apr 8 2021, 17:23.
Merge branch 'vector_features_extension' into 'master'
a858d2175d15
·boubat on Apr 8 2021, 17:14.
feat: Add three new features to Vector.
a52c52ee0465
·boubat on Apr 8 2021, 17:13.
Merge branch 'glenoid_rim_inclination' into 'master'
e4f6836889be
·boubat on Apr 8 2021, 16:05.
feat: Add glenoid rim inclination measurement.
a03fb9943223
·boubat on Apr 8 2021, 16:05.
Merge branch 'glenoid_retroversion' into 'master'
9156ef991edf
·boubat on Apr 8 2021, 15:34.
feat: Add glenoid retroversion measurement.
9341c9dbeba3
·boubat on Apr 8 2021, 15:31.
Merge branch 'vector_features_extension' into 'master'
040981f51e25
·boubat on Apr 8 2021, 14:09.
feat: Add three features to the Vector class.
01f18b8b1139
·boubat on Apr 8 2021, 14:07.
Merge branch 'glenoid_infero_superior_line' into 'master'
9ead59500bba
·boubat on Apr 8 2021, 13:18.
feat: Add the measure of glenoid infero superior line.
d7e99d4c0d68
·boubat on Apr 8 2021, 13:17.
Merge branch 'glenoid_postero_anterior_line' into 'master'
96b451b62b22
·boubat on Apr 8 2021, 13:05.
feat: Add the measure of glenoid postero anterior line.
71a2298f35d1
·boubat on Apr 8 2021, 13:05.
Merge branch 'friedmans_line_modification' into 'master'
b3f6fa24910b
·boubat on Apr 8 2021, 12:13.
refactor: Modify Friedman's line to be a Vector instance.
47bcd381205b
·boubat on Apr 8 2021, 12:10.
Merge branch 'vector_class' into 'master'
1e15fcb346eb
·boubat on Apr 8 2021, 12:02.
feat: Add a basic Vector class.
20208d0985c4
·boubat on Apr 8 2021, 11:53.

Apr 1 2021

Merge branch 'musclesCentroid' into 'master'
7b3df2400ac2
·boubat on Apr 1 2021, 17:57.
feat: Add functions to measure muscles centroid and contour coordinates in…
56fd32646096
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:55.
feat: Add two functions to read muscle related segmentation mask and slice…
9fe70821ddb6
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:54.
refactor: Add missing pixel coordinates save.
23f49df7c6a9
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:53.
Merge branch 'slicePixelsCoordinates' into 'master'
75435e547e69
·boubat on Apr 1 2021, 14:46.
feat: Finish slice pixel coordinates extraction implementation.
cd7e29c50566
·Matthieu Boubat (lbovenus) on Apr 1 2021, 14:43.
feat:WIP Add slice's pixel coordinates export.
d58ec00b5bac
·boubat on Apr 1 2021, 12:38.

Mar 23 2021

Merge branch 'glenoidRim' into 'master'
b82e54c735ef
·boubat on Mar 23 2021, 16:49.
feat: Add a method to find the extreme points of the glenoid rim according to…
792eb24bde0e
·boubat on Mar 23 2021, 16:06.
feat: Add methods to find the rim points of glenoids.
b001c7a73902
·boubat on Mar 23 2021, 16:02.

Mar 22 2021

Merge branch 'friedmansLine' into 'master'
6f48271545d0
·boubat on Mar 22 2021, 16:17.
feat: Implement the measure of the Friedman's scapular line.
1b7c0b38b029
·boubat on Mar 22 2021, 16:06.

Feb 16 2021

refactor: Remove anonymisation code.
b04bf8ae5867
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:43.
refactor: Change logger creation.
91b87400caa9
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:33.
refactor: Change the output of ShoudlerCaseLoader.loadAllCases() from cell…
079b06c8538d
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:20.

Jan 12 2021

feat: Add the anonymisation of all the files containing the IPP in the case…
c4f2d93b1eb0
·Matthieu Boubat (lbovenus) on Jan 12 2021, 15:24.

Jan 11 2021

refactor: Change Logger class last lines to show stop time.
8ac49aeeca7c
·Matthieu Boubat (lbovenus) on Jan 11 2021, 12:40.

Dec 11 2020

refactor: Change try/catch command locations in anonymiseDatabase().
69bc850cffd8
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:24.
refactor: Change properties order in getProperties() method.
62cde38bf596
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:23.
feat: Add a function to run anonymisation of the whole database.
e2f6d712f3ff
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:29.
refactor: Update ShoulderCaseAnonymiser.
5d659a6abe89
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:28.
feat: Fully implement ShoulderCaseAnonymiser.
20bc822d890c
·boubat on Dec 11 2020, 15:01.

Dec 10 2020

refactor: Allow SCase parser and loader to use string besides char array.
384fdd222785
·boubat on Dec 10 2020, 19:19.
feat: Add ShoulderCaseAnonymiser class and implement dicom anonymisation.
933aae66307d
·boubat on Dec 10 2020, 19:18.

Sep 24 2020

fix: Revert last modification and add alternate fix to calcDensity().
a4fcd36437f5
·boubat on Sep 24 2020, 12:24.

Sep 22 2020

fix: Remove useless code that raised errors.
2410f329af66
·boubat on Sep 22 2020, 15:36.

Sep 14 2020

doc: Remove repository hyperlink in README.
cadc91e3ddda
·boubat on Sep 14 2020, 15:49.

Sep 10 2020

fix: Change wrong array indices in calcDensity.
bf01a05daccc
·boubat on Sep 10 2020, 21:55.
Merge branch 'master' of https://gitlab.epfl.ch/shoulder-db/shoulder-db-import…
1f61c4b2b05e
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:32.
refactor: Remove error logging from inside Nathan algotihm.
b5834eb2162c
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:30.