Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
masteref22a3fab2abda068f81e42…

Jul 23 2020

feat: Updates to work with muscles manual segmentations.
ef22a3fab2ab
·boubat on Jul 23 2020, 17:59.
refactor: Update plotSCase() function.
78ebcbd377d0
·boubat on Jul 23 2020, 16:39.
refactor: Correct displayed sentence.
85705b4acfc2
·boubat on Jul 23 2020, 16:37.
refactor: Update classes in order to work with ShoulderCasePlotter.
b226de094ef2
·boubat on Jul 23 2020, 16:19.
feat: Implement the ShoulderCasePlotter class.
4432eeac5673
·boubat on Jul 23 2020, 16:17.
refactor: Remove deprecated ShoulderCase plot related functions.
7f8a638cbe20
·boubat on Jul 23 2020, 16:16.

Jul 22 2020

Merge branch 'boubat' of https://c4science.
167e44723504
·boubat on Jul 22 2020, 16:22.
refactor: Change properties accessibility to private.
50f61df44b04
·boubat on Jul 22 2020, 16:10.
fix: Fix loadAllCases() to actually return the loaded cases.
82f271b12fcc
·boubat on Jul 22 2020, 15:59.
refactor: Update and reduce responsability of plotSCase().
96549406910b
·boubat on Jul 22 2020, 13:42.
refactor: Assert that case is found in loadCase()
7891768d78cb
·boubat on Jul 22 2020, 13:21.
refactor: Implement a new ShoulderCaseLoader class.
0f2e1f6b4147
·boubat on Jul 22 2020, 13:11.
refactor: Remove deprecated classes.
0d9a87ad20f8
·boubat on Jul 22 2020, 13:02.
feat: Add class to print updatable message in the command window.
4c53163888f2
·boubat on Jul 22 2020, 12:59.
fix: Fix two methods.
0696cf43f420
·boubat on Jul 22 2020, 12:58.
refactor: Move function to SCaseIDParser class.
a8418a3b1b1e
·boubat on Jul 22 2020, 12:52.

Jul 20 2020

feat: Implement plot() method for Glenoid class.
b7daf62ea39f
·boubat on Jul 20 2020, 16:34.

Jul 7 2020

fix: Fix typo.
7b63ff442ae9
·boubat on Jul 7 2020, 16:40.
Merge branch 'boubat'
7337316bd8d8
·boubat on Jul 7 2020, 16:20.
fix:Scapula: Change the shoulder side selection to load auto landmarks.
54a722355cfb
·boubat on Jul 7 2020, 16:11.

Jul 3 2020

refactor:plot: Enhance and update plot functions of classes.
89fc192eeb56
·boubat on Jul 3 2020, 19:39.

Jun 22 2020

docs: Correct typos in README.
d071d3df1ebf
·tag: v1.0.5
·boubat on Jun 22 2020, 17:55.
Merge branch 'boubat'
e58d4529f576
·boubat on Jun 22 2020, 17:35.
docs: Update README according to A.Terrier feedback.
e68635252608
·boubat on Jun 22 2020, 17:29.

Jun 19 2020

build: Remove unused files and folders.
f90ce5b3ae69
·boubat on Jun 19 2020, 17:47.
doc: Add file destination in createRotatorCuffSlices().
63218be9cfdb
·boubat on Jun 19 2020, 16:51.

Jun 18 2020

docs: Implement a whole new README following the costcalc repository model.
c2397605d647
·boubat on Jun 18 2020, 18:43.

Jun 16 2020

docs: Update or add documentation for all classes in ./ShoulderCase.
92a343b4b0d8
·boubat on Jun 16 2020, 16:29.

Jun 15 2020

refactor:CasesFinder: Change concatenation for fullfile() utilization. Add…
50e9b38f4d45
·boubat on Jun 15 2020, 18:08.
refactor:ShoulderCase: Change reference from auto shoulder to manual shoulder…
f653ae5039ad
·boubat on Jun 15 2020, 17:07.
refactor:CoordinateSystem: Change how the rotationMatrix is created to avoid…
1b136b35d37d
·boubat on Jun 15 2020, 16:35.

Jun 9 2020

docs:README: Add the description of the config file.
980d5f3ed7e4
·boubat on Jun 9 2020, 18:32.
docs:README: Update doc.
1dc4a0a19ff2
·boubat on Jun 9 2020, 15:39.
refactor:ShoulderCase: Update objects structure in appendToCSV() and output()…
6c0cad5b7b18
·boubat on Jun 9 2020, 15:32.
refactor:measureSCase: Change the creation of SCaseDB variable to take…
807532073f6c
·boubat on Jun 9 2020, 15:31.
refactor:measureSCase: Replace listSCase() utilisation with ShoulderCaseLoader…
84d45f3e79e7
·boubat on Jun 9 2020, 14:50.
feat:ShoulderCaseLoader: Add a method to load all the cases in the database.
0335f4c37b4a
·boubat on Jun 9 2020, 14:16.
refactor:measureSCase: Update verification of exisiting muscles data.
188cadab0290
·boubat on Jun 9 2020, 12:59.
feat:MusclesContainer:clearSummary: Implement the empty state of…
9e9dc90cf8c0
·boubat on Jun 9 2020, 12:55.
refactor:MusclesContainer:createRotatorCuffSlices: Throw an error when there is…
286d8dd80e8a
·boubat on Jun 9 2020, 11:49.

Jun 8 2020

refactor:CoordinateSystem: Extract methods toward Scapula and create the…
b9fd2d7c524f
·boubat on Jun 8 2020, 18:44.
perf:cellArraysDifference: Set new algorithm that takes advantage of builtin…
6c7ee2e85bec
·boubat on Jun 8 2020, 16:11.
fix:ShoulderCaseLoader: Prevent the error due to outdated SCase call to…
29a3fa52703b
·boubat on Jun 8 2020, 16:04.
files: Move all the classes in their @Class folder.
62f58690ff52
·boubat on Jun 8 2020, 16:02.
feat:MusclesContainer: Implement isEmpty() class' method and update other…
7599224428a0
·boubat on Jun 8 2020, 14:38.
refactor:Shoulder: Remove the Muscle addition in Shoulder contructor to prevent…
9ef4a4460815
·boubat on Jun 8 2020, 14:37.

Jun 5 2020

refactor: Update system to use new muscles classes.
57529901bdb2
·boubat on Jun 5 2020, 20:46.
refactor:ShoulderCaseLoader: Split the loadCase method into two.
bfc2bd97ce97
·boubat on Jun 5 2020, 18:06.
refactor:Shoulder:muscles: Update property to new MusclesContainer class.
cdc2cc5bd1d2
·boubat on Jun 5 2020, 17:47.
feat:MusclesContainer:plot: Implement a method that plots segmentation results.
62f82cd4aa84
·boubat on Jun 5 2020, 17:46.
refactor:Muscles: Remove deprecated class Muscles.
5e10ddc4dd02
·boubat on Jun 5 2020, 17:01.
feat:MuscleMeasurer: Implement new class to measure degeneration related values.
001712d94142
·boubat on Jun 5 2020, 16:45.
feat:MusclesContainer: Update and move the slicing and segmenting methods here.
215393eb1cf8
·boubat on Jun 5 2020, 16:43.
feat:Muscle:measure: Implement the method that replaces Muscles.degeneration.
38489099f4c6
·boubat on Jun 5 2020, 16:41.
refactor:MusclesContainer: Change a property type. Add row names to table.
b00418910a93
·boubat on Jun 5 2020, 09:56.

Jun 4 2020

feat: Add classes to replace the current Muscles class
ed6300bff59f
·boubat on Jun 4 2020, 19:13.
doc: Update propagateDataPath function description
013bf5adb5ef
·boubat on Jun 4 2020, 19:13.

Jun 3 2020

fix:paths: Fix errors from the previous commit. Update ShoulderCaseLoader.
5d00832462bc
·boubat on Jun 3 2020, 19:02.
build:ShoulderCase: Give the access to ShoulderCase constructor to…
109a4c7958ec
·boubat on Jun 3 2020, 18:34.

Jun 2 2020

fix:Shoulder: Change shoulder.dataPath not to be set at construction.
8ace928e67ae
·boubat on Jun 2 2020, 19:08.
feat:Shoulder: Add a dataPath property
6c2366ede060
·boubat on Jun 2 2020, 18:54.

May 28 2020

refactor:Muscles: Extract methods from muscles.degeneration dedicated to the…
fd75f40ff87d
·boubat on May 28 2020, 19:06.
fix:Muscles: Fix typos and errors in new degeneration functions
241cdc0e8151
·boubat on May 28 2020, 19:04.
refactor:Muscles:plot: Update files path.
c4835c80d01c
·boubat on May 28 2020, 19:03.
refactor:Muscles: Change property's name
5f5d575e2969
·boubat on May 28 2020, 19:02.

May 27 2020

refactor:Muscles:newDegeneration: Extract slicing and segmenting methods from…
7cb91009bd76
·boubat on May 27 2020, 18:49.
feat:Muscles:plot Implement the plot for this class, displaying the segmented…
8ef31b7c3a59
·boubat on May 27 2020, 16:02.
refactor:Muscles:newDegeneration: Extract a method to clean the rotator cuff…
5307bce7a770
·boubat on May 27 2020, 15:13.
refactor:Muscles:newDegeneration: Extract methods that save the results of…
379c8838e5d5
·boubat on May 27 2020, 15:07.
refactor:Muscles:newDegeneration: Extract the call to python commands into a…
4620dde3f905
·boubat on May 27 2020, 13:12.
feat:Muscles:newDegeneration: Add a function to save the slice where it's…
04bab1535231
·boubat on May 27 2020, 12:52.
feat:Muscles: Add a slicedPixelSpacing property.
ebd964b44837
·boubat on May 27 2020, 12:28.
feat:Muscles:newDegeneration: Save the image to be segmented in the case's…
850447626163
·boubat on May 27 2020, 12:27.

May 20 2020

refacetor:Muscles:newDegeneration: Sketch the future refactored degeneration…
c262f90f92fa
·boubat on May 20 2020, 18:17.
refactor:Muscles: Add some properties to prepare the refactoring of Muscles.
4bde30b85802
·boubat on May 20 2020, 18:15.
refactor:DicomVolume: Update and move functions to separate files for the three…
a1e57f22a675
·boubat on May 20 2020, 18:14.

May 13 2020

feat:DicomVolumeSlicer: Implement the crop() method. Debug ongoing on other…
bde234e812e5
·boubat on May 13 2020, 18:04.
fix:DicomVolumeNormaliser:setMinimalResolutionDividedBy: Prevent the resolution…
d06062e4be4b
·boubat on May 13 2020, 18:02.

May 12 2020

feat:DicomeVolumeSlicer: Implement the measureSlicedPixelSpacings method
953a835372e7
·boubat on May 12 2020, 17:49.
refactor:DicomVolumeNormaliser: Add a division factor to setMinimalResolution().
3001f3d3df2e
·boubat on May 12 2020, 17:47.
feat:DicomVolume: Add a method to get the point coordinates given the point…
017725062789
·boubat on May 12 2020, 17:43.

May 8 2020

Merge branch 'Bashardoust_SystCoord'
a04f3ed203e2
·boubat on May 8 2020, 18:14.
feat:DicomeVolumeSlicer: Implement the prototype of crop and rotation methods…
eca90fb31dbc
·boubat on May 8 2020, 18:12.

May 5 2020

refactor:DicomVolumeNormaliser: Delete deprecated normalising method
7acd12e09741
·boubat on May 5 2020, 14:58.
perf:Plane:plot: Change the radius argument to be an optional argument
4382a0e51879
·boubat on May 5 2020, 11:42.

May 4 2020

perf:Plane:plot: Update the plot method of Plane to show a circle
a759c3f2483c
·boubat on May 4 2020, 17:10.
feat:Circle: Add a Circle object
b3581e059416
·boubat on May 4 2020, 17:09.
feat:Plane: Implement the plot method for the PLane class
bf41261b06ef
·boubat on May 4 2020, 10:39.
extract:DicomVolume: Extract methods from DicomeVolumeSlicer class to new…
a90c6220da75
·boubat on May 4 2020, 10:38.

Apr 29 2020

refactor:Muscles&DicomeVolumeSlicer: Extract the last methods added to the…
fec0e26ef0bb
·boubat on Apr 29 2020, 18:26.

Apr 28 2020

feat:Muscles: Add functions to get a slice of a dicom volume
00d767138ff5
·boubat on Apr 28 2020, 17:49.
files: Create the @Muscles folder for the Muscles object
036a5f51d147
·boubat on Apr 28 2020, 17:28.
feat:ShoulderCaseLoader:loadCase: Add the root path and the dicom path to the…
af7f9a58f1e8
·boubat on Apr 28 2020, 17:25.

Apr 23 2020

feat:CoordinateSystem.m: Add a new function to express local coordinates in…
e76c804d8331
·boubat on Apr 23 2020, 14:05.
fix:Shoulder.m:plot: Change the glenoid sphere center for explicit attribution
f76b662bc8cb
·boubat on Apr 23 2020, 14:04.

Apr 22 2020

refactor:plotSCase.m: Update the way of getting config file data.
f51c749894ea
·boubat on Apr 22 2020, 14:15.
refactor:plotSCase.m: Adapt the plotSCase.m function to the new ShoulderCase.
ac9ebda2e510
·boubat on Apr 22 2020, 13:57.
refactor:ShoulderCase.m:plot: Change the ShoulderCase.plot method to call the…
33e930c3595c
·boubat on Apr 22 2020, 13:37.
refactor:Shoulder.m:plot: Move the plot method from the ShoulderCase object to…
b22704467228
·boubat on Apr 22 2020, 13:36.

Apr 9 2020

feat: Add the MethodsMonitor abstract class that monitor and programm child…
1208bd216f86
·boubat on Apr 9 2020, 17:45.

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masteref22a3fab2abda068f81e42…