Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

R8218/ShoulderCase
master00d767138ff5dfee00998b7…

Apr 28 2020

feat:Muscles: Add functions to get a slice of a dicom volume
00d767138ff5
·boubat on Apr 28 2020, 17:49.
files: Create the @Muscles folder for the Muscles object
036a5f51d147
·boubat on Apr 28 2020, 17:28.
feat:ShoulderCaseLoader:loadCase: Add the root path and the dicom path to the…
af7f9a58f1e8
·boubat on Apr 28 2020, 17:25.

Apr 23 2020

feat:CoordinateSystem.m: Add a new function to express local coordinates in…
e76c804d8331
·boubat on Apr 23 2020, 14:05.
fix:Shoulder.m:plot: Change the glenoid sphere center for explicit attribution
f76b662bc8cb
·boubat on Apr 23 2020, 14:04.

Apr 22 2020

refactor:ShoulderCase.m:plot: Change the ShoulderCase.plot method to call the…
33e930c3595c
·boubat on Apr 22 2020, 13:37.
refactor:Shoulder.m:plot: Move the plot method from the ShoulderCase object to…
b22704467228
·boubat on Apr 22 2020, 13:36.

Apr 9 2020

feat: Add the MethodsMonitor abstract class that monitor and programm child…
1208bd216f86
·boubat on Apr 9 2020, 17:45.
feat: Add a function that substract the elements of cell array from another…
ac653395da5b
·boubat on Apr 9 2020, 17:44.
feat: Add a format.string constant property to Timer object.
f3149ac75f22
·boubat on Apr 9 2020, 17:43.

Mar 27 2020

fix: Adapt SCaseIDParser to new version of FileExtractor
3a3dd5b033de
·tag: v1.0.4
·boubat on Mar 27 2020, 18:57.
perf: Assert validity of inputs and output of FileExtractor
7bcac05318f2
·boubat on Mar 27 2020, 18:56.
perf: Change the output of FileExtractor object to directly return the variable…
ec894e061479
·boubat on Mar 27 2020, 18:43.

Mar 25 2020

fix: Reduce the required number of groove points in scapula CoordinateSystem
a9ac266193d9
·boubat on Mar 25 2020, 17:58.
fix: Orient the glenoid.centerLine toward ML
8fd68c5307ea
·boubat on Mar 25 2020, 17:57.

Mar 23 2020

fix: Re-create the glenoid.walch property and change the auto-measurements…
f522e25284c2
·boubat on Mar 23 2020, 15:49.

Mar 21 2020

fix: Change reference to glenoid.SCase in glenoid.calcDensity
d039ccbc6e2b
·boubat on Mar 21 2020, 14:40.
fix: Change the reference to glenoid.SCase for glenoid.scapula.shoulder.SCase…
a00df81283de
·boubat on Mar 21 2020, 14:28.
fix: Change the access of the contructor of Glenoid
d527ccbae642
·boubat on Mar 21 2020, 14:09.
fix: Add a missing 'end' statement in GlenoidManual
7a38bfa38175
·boubat on Mar 21 2020, 14:06.
fix: Correct typo
7b83430b827a
·boubat on Mar 21 2020, 14:01.
refactor: Change the way the other objects handle the new GlenoidAuto/Manual…
64906d21ca8f
·boubat on Mar 21 2020, 13:59.
refactor: Extract one abstract and two manual/auto object out of the Glenoid…
37f7244f5b40
·boubat on Mar 21 2020, 13:46.

Mar 19 2020

fix: Change python path dependencies to be chosen in config file for muscles.
0813f9597cd9
·boubat on Mar 19 2020, 18:00.
refactor: Delete the output of glenoid.measureVersionAndInclination
16833d2f1296
·boubat on Mar 19 2020, 15:41.
refactor: Delete CT2Scapula method, outdated by the CoordinateSystem.express…
5a539868d490
·boubat on Mar 19 2020, 15:40.

Mar 18 2020

refactor: Implement the glenoid.morphology method to call the dedicated…
b8602c242c8e
·boubat on Mar 18 2020, 18:33.
refactor: Extract a glenoid method to measure its center line
ed0abb1ac3e9
·boubat on Mar 18 2020, 18:30.
fix: Change methods' names to fit their files' names
83cc51e1abd1
·boubat on Mar 18 2020, 18:20.
refactor: Change two glenoid methods' names that gave useless informations
03e98c663eac
·boubat on Mar 18 2020, 18:18.
refactor: Extract a method to measure glenoid version and inclination values
1483e3e34bd3
·boubat on Mar 18 2020, 18:15.

Mar 17 2020

feat: Add a method to measure the glenoid antero-superior angle with PCA
dab0db10293a
·boubat on Mar 17 2020, 18:13.
refactor: Extract a method from glenoid.morphology that expresses the glenoid…
08283f5c6c9a
·boubat on Mar 17 2020, 18:12.
feat: Add a function to project vectors on a vector
94f894f50be6
·boubat on Mar 17 2020, 18:11.
feat: Add methods to project points on the three planes spaned by a…
58f7d71b384b
·boubat on Mar 17 2020, 18:10.

Mar 16 2020

refactor: Extract methods to set glenoid width and height with PCA
1343fa960e9b
·boubat on Mar 16 2020, 19:18.
refactor: Change variable name in glenoid.measureCenter.m
12349073d5f7
·boubat on Mar 16 2020, 14:17.
refactor: Extract method to measure glenoid depth
9f8d05f11f92
·boubat on Mar 16 2020, 14:02.

Mar 6 2020

refactor: Split measureSCase into three part
9f61b0394a61
·tag: v1.0.3
·boubat on Mar 6 2020, 18:04.
refactor: Same as previous commit
347f905db80c
·boubat on Mar 6 2020, 18:02.
refactor: Extrcat
79b6204241ee
·boubat on Mar 6 2020, 18:01.

Feb 28 2020

refactor: Change the implementation of getDataRootPath to use the FileExtractor…
ceac7cb096ef
·boubat on Feb 28 2020, 15:28.
refactor: Split the shoulder property into two new shoulderManual and…
2daf1a5e9e5e
·boubat on Feb 28 2020, 15:26.
refactor: Change the references to SCase for references to the direct parent…
b6e8a76a4b20
·boubat on Feb 28 2020, 15:24.
refactor: Split Scapula class into one abstract and two concrete classes
7f6bf5ba7567
·boubat on Feb 28 2020, 15:21.
refactor: Split Shoulder class into one abstract and two concrete classes
1811acd93a1a
·boubat on Feb 28 2020, 15:19.

Feb 27 2020

refactor: Give properties their values with config file instead of hard code
fb02d552250f
·boubat on Feb 27 2020, 16:25.
refactor: Specify method's scope in method's name
1d78cc59c619
·boubat on Feb 27 2020, 16:23.
feat: Add classes to get text from files
7127638137a7
·boubat on Feb 27 2020, 15:32.

Feb 26 2020

feat: Add a method to load a ShoulderCase
47f7c965deb4
·tag: v1.0.2
·boubat on Feb 26 2020, 17:26.
refactor: Change methods name containing 'SCase' with 'Case'
c5c2bb15d20f
·boubat on Feb 26 2020, 17:25.
refactor: Change names of classes
2690391c0421
·boubat on Feb 26 2020, 15:27.
feat: Add a Logger class to handle log files
07e59409ca60
·boubat on Feb 26 2020, 14:20.

Feb 25 2020

refactor: Remove the obsolete TimerData class
53efc4d4ce69
·boubat on Feb 25 2020, 15:41.
refactor: Change the global property type from containers.Map to LinkedList and…
1af93e155bf6
·boubat on Feb 25 2020, 15:38.
feat: Add a class that implements linked lists
eb188026359a
·boubat on Feb 25 2020, 15:34.

Feb 21 2020

feat: Add a function that asserts that a text matches an expression
2f057628eb1b
·boubat on Feb 21 2020, 18:01.
feat: Add a function that returns the current operating system's path separator
e24dc645d1f2
·boubat on Feb 21 2020, 17:59.
feat: Add an object that measures multiple elapsed times
0f2114220d77
·boubat on Feb 21 2020, 17:57.
feat: Add a class that validates shoulder cases ID
ec160183ca4d
·boubat on Feb 21 2020, 17:56.
feat: Add an object to search shoulder cases in a directory tree
5f21076d32d6
·boubat on Feb 21 2020, 17:54.
feat: Add objects that map shoulder cases paths to shoulder cases ID
8170d98ab94f
·boubat on Feb 21 2020, 17:53.

Feb 10 2020

fix: Make the CoordinateSystem.isOrthogonal method independent from axes' norms
3d35f3b9bb6a
·tag: v1.0.1
·boubat on Feb 10 2020, 17:16.
docs: Add details in a method description
38326d1147b1
·boubat on Feb 10 2020, 15:50.

Feb 5 2020

refactor: Extract methods from coordSysSet. The main part is given to the new…
1e57e9f2e6e0
·boubat on Feb 5 2020, 16:06.
feat: Add the new Plane class that can create and use 3D planes
ccb224d9fe7b
·boubat on Feb 5 2020, 16:04.
feat: Add a function to find the longest vector among a given array of vectors
263e0a20f0a3
·boubat on Feb 5 2020, 16:03.
perf: Complete the methods to set a coordinate system
c3271100b4b6
·boubat on Feb 5 2020, 16:02.
feat: Add a function to choose the direction of a vector toward another one
b2c8a146a3e1
·boubat on Feb 5 2020, 16:00.

Feb 3 2020

feat: Add a class for coordinate systems
2b0026a5085b
·boubat on Feb 3 2020, 17:26.

Jan 30 2020

feat: Add a method for measuring glenoid width and height
c150cfa2519e
·boubat on Jan 30 2020, 20:56.
refactor: Delete the deprecated Ellipsoid class and related methods
72d1984dfd22
·boubat on Jan 30 2020, 15:36.
feat: Add the glenoid surface mean point in a sub-property
4fc5694ee6cd
·boubat on Jan 30 2020, 12:27.

Jan 29 2020

feat: Add the Ellipsoid object for the glenoid fitted ellipsoid
6bcbf0e61ee9
·boubat on Jan 29 2020, 17:44.

Jan 28 2020

feat: Add a method to express points in local coordinate system
676c3acb15a8
·boubat on Jan 28 2020, 19:11.
feat: Add a method for measuring glenoid radius thanks to a fitted sphere
41a56b82b0f8
·boubat on Jan 28 2020, 19:08.
feat: Extract a method used for measuring glenoid center
622dbc650abe
·boubat on Jan 28 2020, 19:06.
fix: Move the Sphere class to ShoulderCase/
492db744a284
·boubat on Jan 28 2020, 18:54.
feat: Add the Sphere object for the glenoid fitted sphere
7a717ce821eb
·boubat on Jan 28 2020, 17:44.

Jan 27 2020

refactor: Extract glenoid center measurement methods out from glenoid…
8f8aa39e7bd4
·boubat on Jan 27 2020, 17:23.

Jan 13 2020

patch
4d59db453045
·boubat on Jan 13 2020, 09:57.

Jan 10 2020

reorganize measureSCase loops and extend the 'auto' loop
b23e1f95940f
·boubat on Jan 10 2020, 11:42.

Jan 7 2020

dicominfopath now correctly chosen pointing to the dicom file in the middle of…
6864e678a34d
·boubat on Jan 7 2020, 10:09.

Dec 20 2019

measureScase now auto computes the RC muscles degenration, and exports meta…
d19a22d656dc
·boubat on Dec 20 2019, 14:46.

Aug 22 2019

The catch now return a correct outputArg to detect that DICOM files couldn't be…
24267f0a0d88
·boubat on Aug 22 2019, 10:31.

Aug 8 2019

Fixed and modified according to A.Terrier comments
2ede99566008
·boubat on Aug 8 2019, 17:47.

Jul 31 2019

Add whole database saving, upgrade measureSCase arguments verification, update…
48fb99446bf3
·boubat on Jul 31 2019, 16:54.

Jul 30 2019

ShoulderCase.saveCSV becomes ShoulderCase.appendToCSV and have to be given a…
2edbc5ad5089
·boubat on Jul 30 2019, 12:56.
small updates
fd6606e5d5fe
·boubat on Jul 30 2019, 10:29.
Revert "small updates"
be8ed18438e7
·boubat on Jul 30 2019, 10:12.
small updates
abcd19405ed2
·boubat on Jul 30 2019, 10:06.

Jul 29 2019

small correction in ShoulderCase.saveCSV
3e81587dadce
·boubat on Jul 29 2019, 17:27.
Add file closing in ShoulderCase.saveCSV
530f732efce3
·boubat on Jul 29 2019, 17:25.
implementation of ShoulderCase.saveCSV method
c3f112e6da73
·boubat on Jul 29 2019, 17:22.

Jul 25 2019

Merge branch 'master' of https://c4science.
8ed5ddd994cb
·aterrier on Jul 25 2019, 06:34.
Update glenoid.m to avoid error when glenoid surface is missing
fa5091109b13
·aterrier on Jul 25 2019, 06:32.

Jun 29 2019

Merge update
62cc6f27f9e0
·aterrier on Jun 29 2019, 23:43.
Inconcistency in humerus preventing pull
fdc3d314a9c8
·aterrier on Jun 29 2019, 23:29.
Error management for landmrks loading
05446cede36c
·aterrier on Jun 29 2019, 22:56.
Cleaned version of plot
1388e204762e
·aterrier on Jun 29 2019, 22:44.

R8218/ShoulderCasemaster00d767138ff5dfee00998b7…

Apr 28 2020

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Jun 29 2019

R8218/ShoulderCase
master00d767138ff5dfee00998b7…