Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

R8218/ShoulderCase
master7a96744b4d4e99dc79533f5…

Apr 28 2021

feat: Add rotator cuff muscles centroid plot to segmentations plot.
7a96744b4d4e
·boubat on Apr 28 2021, 12:49.
feat: Add gaussian filter for hard kernel CT scans.
896a4ab346a3
·boubat on Apr 28 2021, 11:32.

Apr 23 2021

refactor: Change muscle force vector to represent muscular activation.
c749ea4a43ec
·boubat on Apr 23 2021, 13:41.

Apr 21 2021

feat: Add method to export humeral head fitted sphere to .ply file.
b523d4a048f5
·boubat on Apr 21 2021, 16:17.
feat: Add method to export a Sphere to .ply file thanks to BinarySphere.
ec80aabdeaff
·boubat on Apr 21 2021, 16:16.
feat: Add method to find new 3DSlicer folder of SCase.
6c84779ab0bc
·boubat on Apr 21 2021, 16:15.
feat: Add method to load humerus landmakrs from 3DSlicer markups files.
16f1b22821e2
·boubat on Apr 21 2021, 16:14.
refactor: Remove disposable argument and fix char/string concatenation.
e5cc35f4bed9
·boubat on Apr 21 2021, 14:19.
refactor: Remove deprecated property.
90907cc260b3
·boubat on Apr 21 2021, 14:17.

Apr 16 2021

refactor: Change shoulder.muscles for shoulder.rotatorCuff.
47c2d59842b9
·boubat on Apr 16 2021, 16:17.
fix: Fix char/string issue.
fb2909401cda
·boubat on Apr 16 2021, 16:15.
refactor: Divide measure method into three.
afa310747b4f
·boubat on Apr 16 2021, 15:41.
feat: Add measurement of rotator cuff antero-posterior imbalance angle.
bab625d091e5
·boubat on Apr 16 2021, 15:24.
refactor: Make plot method ShoulderCasePlotter compliant.
eb0fc6f6f92a
·boubat on Apr 16 2021, 14:23.
fix: Add missing coefficient.
bed4780af6f2
·boubat on Apr 16 2021, 12:25.
feat: Add muscle measurement of insertion and force vector.
02ce2d5800e0
·boubat on Apr 16 2021, 12:24.
feat: Add Humerus plot method.
5eff374d8477
·boubat on Apr 16 2021, 10:43.
feat: Add plot methods to RotatorCuff.
04648c7bb765
·boubat on Apr 16 2021, 10:18.

Apr 15 2021

fix: Change variable names.
1356f5320c27
·Matthieu Boubat (lbovenus) on Apr 15 2021, 19:39.
feat: Implement RotatorCuff object and add it to Shoulder.
490ef61530c7
·boubat on Apr 15 2021, 19:22.
refactor: Change Muscle construction and add properties summary.
158ebe27c403
·boubat on Apr 15 2021, 19:19.
fix: Change folder name.
0cfd68911b42
·boubat on Apr 15 2021, 19:18.
refactor: Change char array for string.
e3ee0285f235
·boubat on Apr 15 2021, 19:17.
refactor: Change data path handling in Muscles related objects.
0b92d3ff947e
·boubat on Apr 15 2021, 18:09.
refactor: Change the accessibility of objects' properties refering to other…
6b09b54993f4
·boubat on Apr 15 2021, 16:30.
refactor: Make the Shoulder objects and children simpler and remove the need…
b6e0aee02633
·boubat on Apr 15 2021, 16:02.
refactor: Change data paths from being properties to method which remove the…
6b6233bb1687
·boubat on Apr 15 2021, 16:00.
refactor: Change Sphere construction to be intialisable with center and radius.
18386f62dc97
·boubat on Apr 15 2021, 13:00.
feat: Add Sphere polar tangent point finding method.
ff30e63892ee
·boubat on Apr 15 2021, 12:59.
fix: Fix error in minus() when using an array as input.
4f23238a0e74
·boubat on Apr 15 2021, 12:57.

Apr 14 2021

refactor: Change muscle centroid and contour methods ownership from…
1f6f1a05884b
·boubat on Apr 14 2021, 19:12.
feat: Add three features to Vector.
8672dc70095e
·boubat on Apr 14 2021, 18:36.
Merge branch 'muscles_centroid_plot' into 'master'
fb70e1933436
·boubat on Apr 14 2021, 17:31.
feat: Add rotator cuff muscles contour and centroid 3D plots.
d88534adf210
·boubat on Apr 14 2021, 17:28.
feat: Add the slice's pixel coordinates export.
3cb9b325756b
·Matthieu Boubat (lbovenus) on Apr 14 2021, 16:42.

Apr 13 2021

feat: Add methods to export the whole SCases data into a table and save it in a…
597bb3fcfc31
·Pezhman Eghbalishamsabadi / boubat on Apr 13 2021, 13:53.

Apr 8 2021

fix: Remove typos.
760312dc35f9
·boubat on Apr 8 2021, 19:17.
feat: Add 3D humeral subluxation index measurement.
1145767ab72d
·boubat on Apr 8 2021, 18:19.
feat: Add glenoid BETA angle measurement.
6f25c23e0c4e
·boubat on Apr 8 2021, 17:23.
feat: Add three new features to Vector.
a52c52ee0465
·boubat on Apr 8 2021, 17:13.
feat: Add glenoid rim inclination measurement.
a03fb9943223
·boubat on Apr 8 2021, 16:05.
feat: Add glenoid retroversion measurement.
9341c9dbeba3
·boubat on Apr 8 2021, 15:31.
feat: Add three features to the Vector class.
01f18b8b1139
·boubat on Apr 8 2021, 14:07.
feat: Add the measure of glenoid infero superior line.
d7e99d4c0d68
·boubat on Apr 8 2021, 13:17.
feat: Add the measure of glenoid postero anterior line.
71a2298f35d1
·boubat on Apr 8 2021, 13:05.
refactor: Modify Friedman's line to be a Vector instance.
47bcd381205b
·boubat on Apr 8 2021, 12:10.
feat: Add a basic Vector class.
20208d0985c4
·boubat on Apr 8 2021, 11:53.

Apr 1 2021

feat: Add functions to measure muscles centroid and contour coordinates in…
56fd32646096
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:55.
feat: Add two functions to read muscle related segmentation mask and slice…
9fe70821ddb6
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:54.
refactor: Add missing pixel coordinates save.
23f49df7c6a9
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:53.
feat: Finish slice pixel coordinates extraction implementation.
cd7e29c50566
·Matthieu Boubat (lbovenus) on Apr 1 2021, 14:43.
feat:WIP Add slice's pixel coordinates export.
d58ec00b5bac
·boubat on Apr 1 2021, 12:38.

Mar 23 2021

feat: Add a method to find the extreme points of the glenoid rim according to…
792eb24bde0e
·boubat on Mar 23 2021, 16:06.
feat: Add methods to find the rim points of glenoids.
b001c7a73902
·boubat on Mar 23 2021, 16:02.

Mar 22 2021

feat: Implement the measure of the Friedman's scapular line.
1b7c0b38b029
·boubat on Mar 22 2021, 16:06.

Feb 16 2021

refactor: Remove anonymisation code.
b04bf8ae5867
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:43.
refactor: Change the output of ShoudlerCaseLoader.loadAllCases() from cell…
079b06c8538d
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:20.

Jan 12 2021

feat: Add the anonymisation of all the files containing the IPP in the case…
c4f2d93b1eb0
·Matthieu Boubat (lbovenus) on Jan 12 2021, 15:24.

Jan 11 2021

refactor: Change Logger class last lines to show stop time.
8ac49aeeca7c
·Matthieu Boubat (lbovenus) on Jan 11 2021, 12:40.

Dec 11 2020

refactor: Change properties order in getProperties() method.
62cde38bf596
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:23.
refactor: Update ShoulderCaseAnonymiser.
5d659a6abe89
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:28.
feat: Fully implement ShoulderCaseAnonymiser.
20bc822d890c
·boubat on Dec 11 2020, 15:01.

Dec 10 2020

refactor: Allow SCase parser and loader to use string besides char array.
384fdd222785
·boubat on Dec 10 2020, 19:19.
feat: Add ShoulderCaseAnonymiser class and implement dicom anonymisation.
933aae66307d
·boubat on Dec 10 2020, 19:18.

Sep 24 2020

fix: Revert last modification and add alternate fix to calcDensity().
a4fcd36437f5
·boubat on Sep 24 2020, 12:24.

Sep 10 2020

fix: Change wrong array indices in calcDensity.
bf01a05daccc
·boubat on Sep 10 2020, 21:55.
refactor: Remove error logging from inside Nathan algotihm.
b5834eb2162c
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:30.

Sep 4 2020

feat: Add isempty() method to Sphere class and open class accessibility to…
782d0b035f13
·boubat on Sep 4 2020, 14:52.

Aug 31 2020

refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods.
d8f3d531ec36
·boubat on Aug 31 2020, 11:46.
refactor: Update muscles plot method with nes file names used.
d542f8cdde1f
·boubat on Aug 31 2020, 11:45.

Aug 17 2020

refactor: Rename and document the MusclesContainer slicing methods.
bb01683906ed
·boubat on Aug 17 2020, 18:55.

Aug 14 2020

feat: Add a function to find the bounding box of a dicom set.
903ac534e00f
·boubat on Aug 14 2020, 14:42.

Aug 6 2020

refactor: (re)Add the selection of smooth dicom for rotator cuff slices.
3fa1591c88a9
·boubat on Aug 6 2020, 14:20.
fix: Change verified shoulder in configCamera.
86ab4c9fc0c3
·boubat on Aug 6 2020, 12:06.

Aug 5 2020

refactor: Modify zoom, light position and default scapula axes in configCamera.
0013fd4ddd1a
·boubat on Aug 5 2020, 18:59.
fix: Correct name string in MusclesContainer.plot().
bfa30844d304
·boubat on Aug 5 2020, 18:58.
refactor: Update ShoulderCase to SCaseIDParser modifications.
47af1ac7f80e
·boubat on Aug 5 2020, 18:21.
refactor: Change filename creation to use fullfile().
7568f1ca7ccd
·boubat on Aug 5 2020, 18:20.
refactor: Add arguments to MusclesContainer methods to choose combinations of…
be3f45097169
·boubat on Aug 5 2020, 18:19.
refactor: Change displayed scapula surface to be opaque.
453355cdf2e7
·boubat on Aug 5 2020, 18:17.
refactor: Change displayed scapula surface to be opaque. View axes are now from…
47a8997f16da
·boubat on Aug 5 2020, 18:16.

Aug 4 2020

feat: Add a method to sort scapula's groove points lateral to medial.
a7767961504a
·boubat on Aug 4 2020, 14:02.
refactor: Delete a few commands in ShoulderCasePlotter.plot().
9c2a857c1e10
·boubat on Aug 4 2020, 14:00.
refactor: Rename axes initialisation method and add custom toolbar.
01bf191f3e58
·boubat on Aug 4 2020, 13:59.
feat: Add new buttons to ShoulderCasePlotter.
77c8270f788b
·boubat on Aug 4 2020, 13:57.
feat: Add camera related methods to ShoulderCasePlotter.
3d688f719941
·boubat on Aug 4 2020, 13:56.
refactor: Make SoulderCase.plot return the ShoulderCasePlotter.
a6c0ef26a380
·boubat on Aug 4 2020, 13:54.

Jul 31 2020

refactor: Update shoulder case plot functions according to AT feddback.
997424434cad
·boubat on Jul 31 2020, 18:16.

Jul 30 2020

feat: Add methods to Scapula to export its landmakrs into its Amira folder.
59e8c1e80ec4
·boubat on Jul 30 2020, 11:02.
feat: Implement methods to export landmarks in Amira file.
d034858e1ceb
·boubat on Jul 30 2020, 11:01.

Jul 28 2020

refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader.
fee8d639a92c
·boubat on Jul 28 2020, 19:03.
refactor: Update UpdatableText.
4f06f9735153
·boubat on Jul 28 2020, 18:53.
feat: Add a class to export auto landmarks.
764e10153ab1
·boubat on Jul 28 2020, 15:42.

Jul 23 2020

refactor: Revert changes from last commit that alters measurements.
3b926a83c8d4
·boubat on Jul 23 2020, 18:27.
feat: Updates to work with muscles manual segmentations.
ef22a3fab2ab
·boubat on Jul 23 2020, 17:59.
refactor: Correct displayed sentence.
85705b4acfc2
·boubat on Jul 23 2020, 16:37.
refactor: Update classes in order to work with ShoulderCasePlotter.
b226de094ef2
·boubat on Jul 23 2020, 16:19.
feat: Implement the ShoulderCasePlotter class.
4432eeac5673
·boubat on Jul 23 2020, 16:17.
refactor: Remove deprecated ShoulderCase plot related functions.
7f8a638cbe20
·boubat on Jul 23 2020, 16:16.

Jul 22 2020

Merge branch 'boubat' of https://c4science.
167e44723504
·boubat on Jul 22 2020, 16:22.

R8218/ShoulderCasemaster7a96744b4d4e99dc79533f5…

Apr 28 2021

Apr 23 2021

Apr 21 2021

Apr 16 2021

Apr 15 2021

Apr 14 2021

Apr 13 2021

Apr 8 2021

Apr 1 2021

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Aug 31 2020

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Jul 22 2020

R8218/ShoulderCase
master7a96744b4d4e99dc79533f5…