Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

R8218/ShoulderCase
masterbf01a05daccc0629e32adb8…

Sep 10 2020

fix: Change wrong array indices in calcDensity.
bf01a05daccc
·boubat on Sep 10 2020, 21:55.
refactor: Remove error logging from inside Nathan algotihm.
b5834eb2162c
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:30.

Sep 4 2020

feat: Add isempty() method to Sphere class and open class accessibility to…
782d0b035f13
·boubat on Sep 4 2020, 14:52.

Aug 31 2020

refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods.
d8f3d531ec36
·boubat on Aug 31 2020, 11:46.
refactor: Update muscles plot method with nes file names used.
d542f8cdde1f
·boubat on Aug 31 2020, 11:45.

Aug 17 2020

refactor: Rename and document the MusclesContainer slicing methods.
bb01683906ed
·boubat on Aug 17 2020, 18:55.

Aug 14 2020

feat: Add a function to find the bounding box of a dicom set.
903ac534e00f
·boubat on Aug 14 2020, 14:42.

Aug 6 2020

refactor: (re)Add the selection of smooth dicom for rotator cuff slices.
3fa1591c88a9
·boubat on Aug 6 2020, 14:20.
fix: Change verified shoulder in configCamera.
86ab4c9fc0c3
·boubat on Aug 6 2020, 12:06.

Aug 5 2020

refactor: Modify zoom, light position and default scapula axes in configCamera.
0013fd4ddd1a
·boubat on Aug 5 2020, 18:59.
fix: Correct name string in MusclesContainer.plot().
bfa30844d304
·boubat on Aug 5 2020, 18:58.
refactor: Update ShoulderCase to SCaseIDParser modifications.
47af1ac7f80e
·boubat on Aug 5 2020, 18:21.
refactor: Change filename creation to use fullfile().
7568f1ca7ccd
·boubat on Aug 5 2020, 18:20.
refactor: Add arguments to MusclesContainer methods to choose combinations of…
be3f45097169
·boubat on Aug 5 2020, 18:19.
refactor: Change displayed scapula surface to be opaque.
453355cdf2e7
·boubat on Aug 5 2020, 18:17.
refactor: Change displayed scapula surface to be opaque. View axes are now from…
47a8997f16da
·boubat on Aug 5 2020, 18:16.

Aug 4 2020

feat: Add a method to sort scapula's groove points lateral to medial.
a7767961504a
·boubat on Aug 4 2020, 14:02.
refactor: Delete a few commands in ShoulderCasePlotter.plot().
9c2a857c1e10
·boubat on Aug 4 2020, 14:00.
refactor: Rename axes initialisation method and add custom toolbar.
01bf191f3e58
·boubat on Aug 4 2020, 13:59.
feat: Add new buttons to ShoulderCasePlotter.
77c8270f788b
·boubat on Aug 4 2020, 13:57.
feat: Add camera related methods to ShoulderCasePlotter.
3d688f719941
·boubat on Aug 4 2020, 13:56.
refactor: Make SoulderCase.plot return the ShoulderCasePlotter.
a6c0ef26a380
·boubat on Aug 4 2020, 13:54.

Jul 31 2020

refactor: Update shoulder case plot functions according to AT feddback.
997424434cad
·boubat on Jul 31 2020, 18:16.

Jul 30 2020

feat: Add methods to Scapula to export its landmakrs into its Amira folder.
59e8c1e80ec4
·boubat on Jul 30 2020, 11:02.
feat: Implement methods to export landmarks in Amira file.
d034858e1ceb
·boubat on Jul 30 2020, 11:01.

Jul 28 2020

refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader.
fee8d639a92c
·boubat on Jul 28 2020, 19:03.
refactor: Update UpdatableText.
4f06f9735153
·boubat on Jul 28 2020, 18:53.
feat: Add a class to export auto landmarks.
764e10153ab1
·boubat on Jul 28 2020, 15:42.

Jul 23 2020

refactor: Revert changes from last commit that alters measurements.
3b926a83c8d4
·boubat on Jul 23 2020, 18:27.
feat: Updates to work with muscles manual segmentations.
ef22a3fab2ab
·boubat on Jul 23 2020, 17:59.
refactor: Correct displayed sentence.
85705b4acfc2
·boubat on Jul 23 2020, 16:37.
refactor: Update classes in order to work with ShoulderCasePlotter.
b226de094ef2
·boubat on Jul 23 2020, 16:19.
feat: Implement the ShoulderCasePlotter class.
4432eeac5673
·boubat on Jul 23 2020, 16:17.
refactor: Remove deprecated ShoulderCase plot related functions.
7f8a638cbe20
·boubat on Jul 23 2020, 16:16.

Jul 22 2020

Merge branch 'boubat' of https://c4science.
167e44723504
·boubat on Jul 22 2020, 16:22.
refactor: Change properties accessibility to private.
50f61df44b04
·boubat on Jul 22 2020, 16:10.
fix: Fix loadAllCases() to actually return the loaded cases.
82f271b12fcc
·boubat on Jul 22 2020, 15:59.
refactor: Assert that case is found in loadCase()
7891768d78cb
·boubat on Jul 22 2020, 13:21.
refactor: Implement a new ShoulderCaseLoader class.
0f2e1f6b4147
·boubat on Jul 22 2020, 13:11.
refactor: Remove deprecated classes.
0d9a87ad20f8
·boubat on Jul 22 2020, 13:02.
feat: Add class to print updatable message in the command window.
4c53163888f2
·boubat on Jul 22 2020, 12:59.
fix: Fix two methods.
0696cf43f420
·boubat on Jul 22 2020, 12:58.
refactor: Move function to SCaseIDParser class.
a8418a3b1b1e
·boubat on Jul 22 2020, 12:52.

Jul 20 2020

feat: Implement plot() method for Glenoid class.
b7daf62ea39f
·boubat on Jul 20 2020, 16:34.

Jul 7 2020

fix: Fix typo.
7b63ff442ae9
·boubat on Jul 7 2020, 16:40.
Merge branch 'boubat'
7337316bd8d8
·boubat on Jul 7 2020, 16:20.
fix:Scapula: Change the shoulder side selection to load auto landmarks.
54a722355cfb
·boubat on Jul 7 2020, 16:11.

Jul 3 2020

refactor:plot: Enhance and update plot functions of classes.
89fc192eeb56
·boubat on Jul 3 2020, 19:39.

Jun 22 2020

Merge branch 'boubat'
e58d4529f576
·boubat on Jun 22 2020, 17:35.

Jun 19 2020

doc: Add file destination in createRotatorCuffSlices().
63218be9cfdb
·boubat on Jun 19 2020, 16:51.

Jun 16 2020

docs: Update or add documentation for all classes in ./ShoulderCase.
92a343b4b0d8
·boubat on Jun 16 2020, 16:29.

Jun 15 2020

refactor:CasesFinder: Change concatenation for fullfile() utilization. Add…
50e9b38f4d45
·boubat on Jun 15 2020, 18:08.
refactor:ShoulderCase: Change reference from auto shoulder to manual shoulder…
f653ae5039ad
·boubat on Jun 15 2020, 17:07.
refactor:CoordinateSystem: Change how the rotationMatrix is created to avoid…
1b136b35d37d
·boubat on Jun 15 2020, 16:35.

Jun 9 2020

refactor:ShoulderCase: Update objects structure in appendToCSV() and output()…
6c0cad5b7b18
·boubat on Jun 9 2020, 15:32.
feat:ShoulderCaseLoader: Add a method to load all the cases in the database.
0335f4c37b4a
·boubat on Jun 9 2020, 14:16.
feat:MusclesContainer:clearSummary: Implement the empty state of…
9e9dc90cf8c0
·boubat on Jun 9 2020, 12:55.
refactor:MusclesContainer:createRotatorCuffSlices: Throw an error when there is…
286d8dd80e8a
·boubat on Jun 9 2020, 11:49.

Jun 8 2020

refactor:CoordinateSystem: Extract methods toward Scapula and create the…
b9fd2d7c524f
·boubat on Jun 8 2020, 18:44.
perf:cellArraysDifference: Set new algorithm that takes advantage of builtin…
6c7ee2e85bec
·boubat on Jun 8 2020, 16:11.
fix:ShoulderCaseLoader: Prevent the error due to outdated SCase call to…
29a3fa52703b
·boubat on Jun 8 2020, 16:04.
files: Move all the classes in their @Class folder.
62f58690ff52
·boubat on Jun 8 2020, 16:02.
feat:MusclesContainer: Implement isEmpty() class' method and update other…
7599224428a0
·boubat on Jun 8 2020, 14:38.
refactor:Shoulder: Remove the Muscle addition in Shoulder contructor to prevent…
9ef4a4460815
·boubat on Jun 8 2020, 14:37.

Jun 5 2020

refactor: Update system to use new muscles classes.
57529901bdb2
·boubat on Jun 5 2020, 20:46.
refactor:ShoulderCaseLoader: Split the loadCase method into two.
bfc2bd97ce97
·boubat on Jun 5 2020, 18:06.
refactor:Shoulder:muscles: Update property to new MusclesContainer class.
cdc2cc5bd1d2
·boubat on Jun 5 2020, 17:47.
feat:MusclesContainer:plot: Implement a method that plots segmentation results.
62f82cd4aa84
·boubat on Jun 5 2020, 17:46.
refactor:Muscles: Remove deprecated class Muscles.
5e10ddc4dd02
·boubat on Jun 5 2020, 17:01.
feat:MuscleMeasurer: Implement new class to measure degeneration related values.
001712d94142
·boubat on Jun 5 2020, 16:45.
feat:MusclesContainer: Update and move the slicing and segmenting methods here.
215393eb1cf8
·boubat on Jun 5 2020, 16:43.
feat:Muscle:measure: Implement the method that replaces Muscles.degeneration.
38489099f4c6
·boubat on Jun 5 2020, 16:41.
refactor:MusclesContainer: Change a property type. Add row names to table.
b00418910a93
·boubat on Jun 5 2020, 09:56.

Jun 4 2020

feat: Add classes to replace the current Muscles class
ed6300bff59f
·boubat on Jun 4 2020, 19:13.
doc: Update propagateDataPath function description
013bf5adb5ef
·boubat on Jun 4 2020, 19:13.

Jun 3 2020

fix:paths: Fix errors from the previous commit. Update ShoulderCaseLoader.
5d00832462bc
·boubat on Jun 3 2020, 19:02.
build:ShoulderCase: Give the access to ShoulderCase constructor to…
109a4c7958ec
·boubat on Jun 3 2020, 18:34.

Jun 2 2020

fix:Shoulder: Change shoulder.dataPath not to be set at construction.
8ace928e67ae
·boubat on Jun 2 2020, 19:08.
feat:Shoulder: Add a dataPath property
6c2366ede060
·boubat on Jun 2 2020, 18:54.

May 28 2020

refactor:Muscles: Extract methods from muscles.degeneration dedicated to the…
fd75f40ff87d
·boubat on May 28 2020, 19:06.
fix:Muscles: Fix typos and errors in new degeneration functions
241cdc0e8151
·boubat on May 28 2020, 19:04.
refactor:Muscles:plot: Update files path.
c4835c80d01c
·boubat on May 28 2020, 19:03.
refactor:Muscles: Change property's name
5f5d575e2969
·boubat on May 28 2020, 19:02.

May 27 2020

refactor:Muscles:newDegeneration: Extract slicing and segmenting methods from…
7cb91009bd76
·boubat on May 27 2020, 18:49.
feat:Muscles:plot Implement the plot for this class, displaying the segmented…
8ef31b7c3a59
·boubat on May 27 2020, 16:02.
refactor:Muscles:newDegeneration: Extract a method to clean the rotator cuff…
5307bce7a770
·boubat on May 27 2020, 15:13.
refactor:Muscles:newDegeneration: Extract methods that save the results of…
379c8838e5d5
·boubat on May 27 2020, 15:07.
refactor:Muscles:newDegeneration: Extract the call to python commands into a…
4620dde3f905
·boubat on May 27 2020, 13:12.
feat:Muscles:newDegeneration: Add a function to save the slice where it's…
04bab1535231
·boubat on May 27 2020, 12:52.
feat:Muscles: Add a slicedPixelSpacing property.
ebd964b44837
·boubat on May 27 2020, 12:28.
feat:Muscles:newDegeneration: Save the image to be segmented in the case's…
850447626163
·boubat on May 27 2020, 12:27.

May 20 2020

refacetor:Muscles:newDegeneration: Sketch the future refactored degeneration…
c262f90f92fa
·boubat on May 20 2020, 18:17.
refactor:Muscles: Add some properties to prepare the refactoring of Muscles.
4bde30b85802
·boubat on May 20 2020, 18:15.
refactor:DicomVolume: Update and move functions to separate files for the three…
a1e57f22a675
·boubat on May 20 2020, 18:14.

May 13 2020

feat:DicomVolumeSlicer: Implement the crop() method. Debug ongoing on other…
bde234e812e5
·boubat on May 13 2020, 18:04.
fix:DicomVolumeNormaliser:setMinimalResolutionDividedBy: Prevent the resolution…
d06062e4be4b
·boubat on May 13 2020, 18:02.

May 12 2020

feat:DicomeVolumeSlicer: Implement the measureSlicedPixelSpacings method
953a835372e7
·boubat on May 12 2020, 17:49.
refactor:DicomVolumeNormaliser: Add a division factor to setMinimalResolution().
3001f3d3df2e
·boubat on May 12 2020, 17:47.
feat:DicomVolume: Add a method to get the point coordinates given the point…
017725062789
·boubat on May 12 2020, 17:43.

May 8 2020

Merge branch 'Bashardoust_SystCoord'
a04f3ed203e2
·boubat on May 8 2020, 18:14.

R8218/ShoulderCasemasterbf01a05daccc0629e32adb8…

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R8218/ShoulderCase
masterbf01a05daccc0629e32adb8…