Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F60152951
IOPLaTeXGuidelines.bbl
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Sat, Apr 27, 21:55
Size
12 KB
Mime Type
text/x-tex
Expires
Mon, Apr 29, 21:55 (2 d)
Engine
blob
Format
Raw Data
Handle
17298077
Attached To
R9417 2019-Bolt_CAPs
IOPLaTeXGuidelines.bbl
View Options
\begin{thebibliography}{10}
\bibitem{Allen2014}
{\sc Allen, E.~A., Damaraju, E., Plis, S.~M., Erhardt, E.~B., Eichele, T., and
Calhoun, V.~D.}
\newblock {Tracking whole-brain connectivity dynamics in the resting state}.
\newblock {\em Cerebral Cortex 24}, 3 (mar 2014), 663--676.
\bibitem{Bolton2019d}
{\sc Bolton, T. A.~W., Farouj, Y., Inan, M., and Van De~Ville, D.}
\newblock Structurally-informed deconvolution of functional magnetic resonance
imaging data.
\newblock In {\em 16th International Symposium on Biomedical Imaging (ISBI)\/}
(2019), IEEE, pp.~1545--1549.
\bibitem{Bolton2017b}
{\sc Bolton, T. A.~W., Tarun, A., Sterpenich, V., Schwartz, S., and Van
De~Ville, D.}
\newblock Interactions between large-scale functional brain networks are
captured by sparse coupled hmms.
\newblock {\em IEEE Transactions on Medical Imaging 37}, 1 (2017), 230--240.
\bibitem{Bolton2019c}
{\sc Bolton, T. A.~W., Z{\"o}ller, D., Caballero-Gaudes, C., Kebets, V.,
Glerean, E., and Van De~Ville, D.}
\newblock Agito ergo sum: correlates of spatiotemporal motion characteristics
during fmri.
\newblock {\em ArXiv (DOI: 1906.06445)\/} (2019).
\bibitem{Bressler2010}
{\sc Bressler, S.~L., and Menon, V.}
\newblock Large-scale brain networks in cognition: emerging methods and
principles.
\newblock {\em Trends in Cognitive Sciences 14}, 6 (2010), 277--290.
\bibitem{Buckner2008}
{\sc Buckner, R.~L., Andrews-Hanna, J.~R., and Schacter, D.~L.}
\newblock The brain's default network.
\newblock {\em Annals of the New York Academy of Sciences 1124}, 1 (2008),
1--38.
\bibitem{Chang2010}
{\sc Chang, C., and Glover, G.~H.}
\newblock {Time-frequency dynamics of resting-state brain connectivity measured
with fMRI}.
\newblock {\em Neuroimage 50}, 1 (2010), 81--98.
\bibitem{Chen2019b}
{\sc Chen, J.~E., Polimeni, J.~R., Bollmann, S., and Glover, G.~H.}
\newblock On the analysis of rapidly sampled fmri data.
\newblock {\em Neuroimage 188\/} (2019), 807--820.
\bibitem{Chen2016d}
{\sc Chen, S., Langely, J., Chen, X., and Hu, X.}
\newblock Spatiotemporal modeling of brain dynamics using resting-state
functional magnetic resonance imaging with {G}aussian hidden {M}arkov model.
\newblock {\em Brain Topography 6}, 4 (2016), 326--334.
\bibitem{Chen2016}
{\sc Chen, T., Cai, W., Ryali, S., Supekar, K., and Menon, V.}
\newblock {Distinct global brain dynamics and spatiotemporal organization of
the salience network}.
\newblock {\em PLOS Biology 14}, 6 (2016), 1--21.
\bibitem{Christoff2016}
{\sc Christoff, K., Irving, Z.~C., Fox, K. C.~R., Spreng, R.~N., and
Andrews-Hanna, J.~R.}
\newblock {Mind-wandering as spontaneous thought: a dynamic framework}.
\newblock {\em Nature Reviews Neuroscience 17}, 11 (2016), 718--731.
\bibitem{Damaraju2014}
{\sc Damaraju, E., Allen, E.~A., Belger, A., Ford, J.~M., McEwen, S., Mathalon,
D.~H., Mueller, B.~A., Pearlson, G.~D., Potkin, S.~G., Preda, A., Turner,
J.~A., Vaidya, J.~G., van Erp, T.~G., and Calhoun, V.~D.}
\newblock {Dynamic functional connectivity analysis reveals transient states of
dysconnectivity in schizophrenia}.
\newblock {\em Neuroimage: Clinical 5\/} (2014), 298--308.
\bibitem{Damoiseaux2006}
{\sc Damoiseaux, J.~S., Rombouts, S. A.~R., Barkhof, F., Scheltens, P., Stam,
C.~J., Smith, S.~M., and Beckmann, C.~F.}
\newblock {Consistent resting-state networks across healthy subjects}.
\newblock {\em Proceedings of the National Academy of Sciences 103}, 37 (2006),
13848--13853.
\bibitem{Eavani2013}
{\sc Eavani, H., Satterthwaite, T.~D., Gur, R.~E., Gur, R.~C., and Davatzikos,
C.}
\newblock {Unsupervised learning of functional network dynamics in resting
state fMRI}.
\newblock {\em Lecture Notes in Computer Science 7917\/} (2013), 426--437.
\bibitem{Friedman2007}
{\sc Friedman, J., Hastie, T., H{\"o}fling, H., Tibshirani, R., et~al.}
\newblock Pathwise coordinate optimization.
\newblock {\em The Annals of Applied Statistics 1}, 2 (2007), 302--332.
\bibitem{Friedman2010}
{\sc Friedman, J., Hastie, T., and Tibshirani, R.}
\newblock Regularization paths for generalized linear models via coordinate
descent.
\newblock {\em Journal of Statistical Software 33}, 1 (2010), 1.
\bibitem{Friston1994b}
{\sc Friston, K.~J.}
\newblock {F}unctional and effective connectivity in neuroimaging: {A}
synthesis.
\newblock {\em Human Brain Mapping 2}, 1 (1994), 56--78.
\bibitem{Gilson2016}
{\sc Gilson, M., Moreno-Bote, R., Ponce-Alvarez, A., Ritter, P., and Deco, G.}
\newblock Estimation of directed effective connectivity from fmri functional
connectivity hints at asymmetries of cortical connectome.
\newblock {\em PLOS Computational Biology 12}, 3 (2016), e1004762.
\bibitem{Glasser2016}
{\sc Glasser, M.~F., Coalson, T.~S., Robinson, E.~C., Hacker, C.~D., Harwell,
J., Yacoub, E., Ugurbil, K., Andersson, J., Beckmann, C.~F., Jenkinson, M.,
et~al.}
\newblock A multi-modal parcellation of human cerebral cortex.
\newblock {\em Nature 536}, 7615 (2016), 171--178.
\bibitem{Iraji2019}
{\sc Iraji, A., Fu, Z., Damaraju, E., DeRamus, T.~P., Lewis, N., Bustillo,
J.~R., Lenroot, R.~K., Belger, A., Ford, J.~M., McEwen, S., et~al.}
\newblock Spatial dynamics within and between brain functional domains: A
hierarchical approach to study time-varying brain function.
\newblock {\em Human Brain Mapping 40}, 6 (2019), 1969--1986.
\bibitem{Kang2019}
{\sc Kang, J., Pae, C., and Park, H.}
\newblock Graph-theoretical analysis for energy landscape reveals the
organization of state transitions in the resting-state human cerebral cortex.
\newblock {\em PLOS ONE 14}, 9 (2019), 0222161.
\bibitem{Karahanoglu2013}
{\sc Karahano{\u{g}}lu, F.~I., Caballero-Gaudes, C., Lazeyras, F., and Van
De~Ville, D.}
\newblock Total activation: fmri deconvolution through spatio-temporal
regularization.
\newblock {\em Neuroimage 73\/} (2013), 121--134.
\bibitem{Karahanoglu2015}
{\sc Karahano{\u{g}}lu, F.~I., and {Van De Ville}, D.}
\newblock {Transient brain activity disentangles fMRI resting-state dynamics in
terms of spatially and temporally overlapping networks}.
\newblock {\em Nature Communications 6\/} (2015), 7751.
\bibitem{Kiviniemi2011}
{\sc Kiviniemi, V., Vire, T., Remes, J., Elseoud, A.~A., Starck, T., Tervonen,
O., and Nikkinen, J.}
\newblock {A sliding time-window ICA reveals spatial variability of the default
mode network in time}.
\newblock {\em Brain Connectivity 1}, 4 (2011), 339--347.
\bibitem{Kottaram2018}
{\sc Kottaram, A., Johnston, L., Ganella, E., Pantelis, C., Kotagiri, R., and
Zalesky, A.}
\newblock Spatio-temporal dynamics of resting-state brain networks improve
single-subject prediction of schizophrenia diagnosis.
\newblock {\em Human Brain Mapping 39}, 9 (2018), 3663--3681.
\bibitem{Lennartz2018}
{\sc Lennartz, C., Schiefer, J., Rotter, S., Hennig, J., and LeVan, P.}
\newblock Sparse estimation of resting-state effective connectivity from fmri
cross-spectra.
\newblock {\em Frontiers in Neuroscience 12\/} (2018), 287.
\bibitem{Liegeois2017}
{\sc Li{\'{e}}geois, R., Laumann, T.~O., Snyder, A.~Z., Zhou, J., and Yeo, B.
T.~T.}
\newblock Interpreting temporal fluctuations in resting-state functional
connectivity mri.
\newblock {\em Neuroimage 163\/} (2017), 437--455.
\bibitem{Liu2013b}
{\sc Liu, X., Chang, C., and Duyn, J.~H.}
\newblock {Decomposition of spontaneous brain activity into distinct fMRI
co-activation patterns}.
\newblock {\em Frontiers in Systems Neuroscience 7\/} (2013), 1--11.
\bibitem{Liu2013}
{\sc Liu, X., and Duyn, J.~H.}
\newblock {Time-varying functional network information extracted from brief
instances of spontaneous brain activity}.
\newblock {\em Proceedings of the National Academy of Sciences 110}, 11 (2013),
4392--4397.
\bibitem{Lurie2018}
{\sc Lurie, D., Kessler, D., Bassett, D., Betzel, R.~F., Breakspear, M.,
Keilholz, S., Kucyi, A., Li{\'e}geois, R., Lindquist, M.~A., and McIntosh,
A.~R.}
\newblock On the nature of resting fmri and time-varying functional
connectivity.
\newblock {\em PsyArXiv\/} (2018).
\bibitem{Montague2002}
{\sc Montague, P.~R., et~al.}
\newblock {H}yperscanning: simultaneous f{MRI} during linked social
interactions.
\newblock {\em Neuroimage 16\/} (2002), 1159--1164.
\bibitem{Murphy2017}
{\sc Murphy, K., and Fox, M.~D.}
\newblock Towards a consensus regarding global signal regression for resting
state functional connectivity mri.
\newblock {\em Neuroimage 154\/} (2017), 169--173.
\bibitem{Pedersen2018b}
{\sc Pedersen, M., Zalesky, A., Omidvarnia, A., and Jackson, G.~D.}
\newblock Multilayer network switching rate predicts brain performance.
\newblock {\em Proceedings of the National Academy of Sciences 115}, 52 (2018),
13376--13381.
\bibitem{Power2012}
{\sc Power, J.~D., Barnes, K.~A., Snyder, A.~Z., Schlaggar, B.~L., and
Petersen, S.~E.}
\newblock Spurious but systematic correlations in functional connectivity {MRI}
networks arise from subject motion.
\newblock {\em Neuroimage 59}, 3 (2012), 2142--2154.
\bibitem{Power2010}
{\sc Power, J.~D., Fair, D.~A., Schlaggar, B.~L., and Petersen, S.~E.}
\newblock {The Development of Human Functional Brain Networks}.
\newblock {\em Neuron 67}, 5 (2010), 735--748.
\bibitem{Power2019}
{\sc Power, J.~D., Silver, B.~M., Dubin, M.~J., Martin, A., and Jones, R.~M.}
\newblock {D}istinctions among real and apparent respiratory motions in human
f{MRI} data, 2019.
\bibitem{Preti2017}
{\sc Preti, M.~G., Bolton, T. A.~W., and {Van De Ville}, D.}
\newblock {The dynamic functional connectome: State-of-the-art and
perspectives}.
\newblock {\em Neuroimage 160\/} (2017), 41--54.
\bibitem{Rabiner1989}
{\sc Rabiner, L.~R.}
\newblock A tutorial on hidden markov models and selected applications in
speech recognition.
\newblock {\em Proceedings of the IEEE 77}, 2 (1989), 257--286.
\bibitem{Schaefer2017}
{\sc Schaefer, A., Kong, R., Gordon, E.~M., Laumann, T.~O., Zuo, X., Holmes,
A.~J., Eickhoff, S.~B., and Yeo, B. T.~T.}
\newblock Local-global parcellation of the human cerebral cortex from intrinsic
functional connectivity mri.
\newblock {\em Cerebral Cortex 28}, 9 (2017), 3095--3114.
\bibitem{Smith2013}
{\sc Smith, S.~M., Beckmann, C.~F., Andersson, J., Auerbach, E.~J.,
Bijsterbosch, J., Douaud, G., Duff, E., Feinberg, D.~A., Griffanti, L.,
Harms, M.~P., et~al.}
\newblock Resting-state fmri in the human connectome project.
\newblock {\em Neuroimage 80\/} (2013), 144--168.
\bibitem{Smith2012}
{\sc Smith, S.~M., Miller, K.~L., Moeller, S., Xu, J., Auerbach, E.~J.,
Woolrich, M.~W., Beckmann, C.~F., Jenkinson, M., Andersson, J., Glasser,
M.~F., et~al.}
\newblock Temporally-independent functional modes of spontaneous brain
activity.
\newblock {\em Proceedings of the National Academy of Sciences 109}, 8 (2012),
3131--3136.
\bibitem{Smith2010}
{\sc Smith, S.~M., Miller, K.~L., {Salimi-Khorshidi}, G., Webster, M.,
Beckmann, C.~F., Nichols, T.~E., Ramsey, J.~D., and Woolrich, M.~W.}
\newblock Network modelling methods for {fMRI}.
\newblock {\em NeuroImage\/} (Sep 2010).
\bibitem{Tibshirani1996}
{\sc Tibshirani, R.}
\newblock Regression shrinkage and selection via the {LASSO}.
\newblock {\em Journal of the Royal Statistical Society, Series B 58\/} (1994),
267--288.
\bibitem{TzourioMazoyer2002}
{\sc Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard,
O., Delcroix, N., Mazoyer, B., and Loliot, M.}
\newblock Automated anatomical labeling of activations in {SPM} using a
macroscopic anatomical parcellation of the {MNI} {MRI} single-subject brain.
\newblock {\em NeuroImage 15\/} (2002), 273--289.
\bibitem{VanDenHeuvel2010}
{\sc van~den Heuvel, M.~P., and {Hulshoff Pol}, H.~E.}
\newblock {Exploring the brain network: A review on resting-state fMRI
functional connectivity}.
\newblock {\em European Neuropsychopharmacology 20}, 8 (2010), 519--534.
\bibitem{VanEssen2013}
{\sc {Van Essen}, D.~C., Smith, S.~M., Barch, D.~M., Behrens, T. E.~J., Yacoub,
E., and Ugurbil, K.}
\newblock {The WU-Minn Human Connectome Project: An overview}.
\newblock {\em Neuroimage 80\/} (2013), 62--79.
\bibitem{Vidaurre2017}
{\sc Vidaurre, D., Smith, S.~M., and Woolrich, M.~W.}
\newblock {Brain network dynamics are hierarchically organized in time}.
\newblock {\em Proceedings of the National Academy of Sciences 114}, 48 (2017),
201705120.
\bibitem{Yeo2011}
{\sc Yeo, B. T.~T., Krienen, F.~M., Sepulcre, J., Sabuncu, M.~R., Lashkari, D.,
Hollinshead, M., Roffman, J.~L., Smoller, J.~W., Z{\"o}llei, L., Polimeni,
J.~R., et~al.}
\newblock The organization of the human cerebral cortex estimated by intrinsic
functional connectivity.
\newblock {\em Journal of Neurophysiology 106}, 3 (2011), 1125--1165.
\bibitem{Zou2005}
{\sc Zou, H., and Hastie, T.}
\newblock Regularization and variable selection via the elastic net.
\newblock {\em Journal of the Royal Statistical Society: Series B (Statistical
Methodology) 67}, 2 (2005), 301--320.
\end{thebibliography}
Event Timeline
Log In to Comment