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ch_spark.log
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This file is larger than 256 KB, so syntax highlighting was skipped.
This document is not UTF8. It was detected as ISO-8859-1 (Latin 1) and converted to UTF8 for display.
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex 2018.12.12) 17 DEC 2019 09:03
entering extended mode
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**ch_spark.tex
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LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
! Undefined control sequence.
l.2 \chapter
{SPar-K}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.2 \chapter{S
Par-K}
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Overfull \hbox (20.0pt too wide) in paragraph at lines 2--6
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[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.7 T
his chapter describes SPar-K (Signal Partitioning with K-means), a modi...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Overfull \hbox (20.0pt too wide) in paragraph at lines 7--8
[]
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.9 I
developed, implemented and benchmark this algorithm and produced all t...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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! Undefined control sequence.
l.9 ...an adapted from the original article \citep
{groux_spar-k:_2019}.
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no g in font nullfont!
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Missing character: There is no x in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.9 ...ted from the original article \citep{groux_
spar-k:_2019}.
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <7> on input line 9.
LaTeX Font Info: External font `cmex10' loaded for size
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! Extra }, or forgotten $.
l.9 ...original article \citep{groux_spar-k:_2019}
.
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Missing $ inserted.
<inserted text>
$
l.10
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
Overfull \hbox (20.0pt too wide) in paragraph at lines 9--10
[]
[]
Overfull \hbox (27.15863pt too wide) in paragraph at lines 9--10
[]\OML/cmm/m/it/10 par \OMS/cmsy/m/n/10 ^^@
[]
Overfull \hbox (15.56247pt too wide) in paragraph at lines 9--10
\OML/cmm/m/it/10 k \OT1/cmr/m/n/10 :[]
[]
Overfull \hbox (17.77783pt too wide) in paragraph at lines 9--10
\OT1/cmr/m/n/10 019\OML/cmm/m/it/10 :$
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.11 D
ue to the wealth of sequencing data, it is common to analyze positiona...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Missing character: There is no y in font nullfont!
Missing character: There is no M in font nullfont!
Missing character: There is no N in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no s in font nullfont!
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Missing character: There is no q in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
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Missing character: There is no c in font nullfont!
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Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
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Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no I in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no - in font nullfont!
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Missing character: There is no e in font nullfont!
Missing character: There is no q in font nullfont!
Missing character: There is no ) in font nullfont!
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Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
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Missing character: There is no r in font nullfont!
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Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no H in font nullfont!
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Missing character: There is no w in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no a in font nullfont!
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! Undefined control sequence.
l.11 ... relationship. However, as noted in \citep
{kundaje_ubiquitous_2012},...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no k in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
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Missing character: There is no j in font nullfont!
Missing character: There is no e in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.11 ...ship. However, as noted in \citep{kundaje_
ubiquitous_2012}, chromati...
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Extra }, or forgotten $.
l.11 ...s noted in \citep{kundaje_ubiquitous_2012}
, chromatin patterns tend ...
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Missing $ inserted.
<inserted text>
$
l.12
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
Overfull \hbox (20.0pt too wide) in paragraph at lines 11--12
[]
[]
Overfull \hbox (1003.43375pt too wide) in paragraph at lines 11--12
[]\OML/cmm/m/it/10 biquitous[]\OT1/cmr/m/n/10 012\OML/cmm/m/it/10 ; chromatinpa
tternstendtobeheterogeneousandoftenasymmetric:Furthermore; limitedmappingprecis
ionleadingtomoderatemisalignmentbetweenfunctionallyequivalentregionscanalsoobsc
ureachromatinpattern:$
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.13 S
everal methods and software have been developed for discovering chroma...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no S in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no v in font nullfont!
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Missing character: There is no a in font nullfont!
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Missing character: There is no d in font nullfont!
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Missing character: There is no a in font nullfont!
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Missing character: There is no a in font nullfont!
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Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
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Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no A in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no H in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no A in font nullfont!
Missing character: There is no G in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no I in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
l.13 ...es, CAGT and ChIP-Partitioning, see \citep
{nair_probabilistic_2014} ...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no r in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.13 ...GT and ChIP-Partitioning, see \citep{nair_
probabilistic_2014} and re...
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Extra }, or forgotten $.
l.13 ...oning, see \citep{nair_probabilistic_2014}
and references therein. A...
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Missing $ inserted.
<inserted text>
$
l.14
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
Overfull \hbox (20.0pt too wide) in paragraph at lines 13--14
[]
[]
Overfull \hbox (890.0837pt too wide) in paragraph at lines 13--14
[]\OML/cmm/m/it/10 robabilistic[]\OT1/cmr/m/n/10 014\OML/cmm/m/it/10 andreferen
cestherein:Alloftheseprogramshavesomelimitations:Somedonotrealign; othersareres
trictedtocountdataorlackanefficientimplementation:Tofillthisgap; IdevelopedSPar
\OMS/cmsy/m/n/10 ^^@
[]
Overfull \hbox (137.50246pt too wide) in paragraph at lines 13--14
\OML/cmm/m/it/10 K\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 SignalPartitioningwithK \OM
S/cmsy/m/n/10 ^^@
[]
Overfull \hbox (36.07883pt too wide) in paragraph at lines 13--14
\OML/cmm/m/it/10 means\OT1/cmr/m/n/10 )\OML/cmm/m/it/10 :$
[]
! Undefined control sequence.
l.15 \section
{Algorithm}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.15 \section{A
lgorithm}
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no A in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no m in font nullfont!
Overfull \hbox (20.0pt too wide) in paragraph at lines 15--16
[]
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.18 S
Par-K algorithm (Algorithm \ref{algo_spark}) is a modified version of ...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no S in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no K in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no A in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no m in font nullfont!
! Undefined control sequence.
<write> ...eference `algo_spark' on page \thepage
\space undefined\on@line .
l.18 SPar-K algorithm (Algorithm \ref{algo_spark}
) is a modified version of ...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `algo_spark' on page undefined on input line 18.
Missing character: There is no ) in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no K in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.21 T
he input data are stored as a $N$ rows and $L$ columns matrix $R$. The...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Missing character: There is no e in font nullfont!
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Missing character: There is no C in font nullfont!
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Missing character: There is no t in font nullfont!
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Missing character: There is no t in font nullfont!
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Missing character: There is no n in font nullfont!
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Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no i in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
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Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
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Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
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! Undefined control sequence.
<write> ...algo_smooth_outliers' on page \thepage
\space undefined\on@line .
l.21 ...lues (Algorithm \ref{algo_smooth_outliers}
) and ease the partitionin...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `algo_smooth_outliers' on page undefined on input lin
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Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
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Overfull \hbox (20.0pt too wide) in paragraph at lines 21--22
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Overfull \hbox (9.12497pt too wide) in paragraph at lines 21--22
\OML/cmm/m/it/10 N$
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Overfull \hbox (6.80557pt too wide) in paragraph at lines 21--22
\OML/cmm/m/it/10 L$
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Overfull \hbox (7.67015pt too wide) in paragraph at lines 21--22
\OML/cmm/m/it/10 R$
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 21--22
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.24 S
Par-K optimizes the alignments by minimizing the sum of squares errors...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Overfull \hbox (20.0pt too wide) in paragraph at lines 24--25
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.27 T
he distance between any two regions is computed a modified correlation...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
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Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
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Missing character: There is no f in font nullfont!
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Missing character: There is no e in font nullfont!
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Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no I in font nullfont!
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Missing character: There is no f in font nullfont!
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Missing character: There is no i in font nullfont!
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Missing character: There is no p in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no o in font nullfont!
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Missing character: There is no e in font nullfont!
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Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
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Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
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Missing character: There is no t in font nullfont!
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! Undefined control sequence.
<write> ... `algo_distance_fast' on page \thepage
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l.27 ...ch (see algorithm \ref{algo_distance_fast}
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The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
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LaTeX Warning: Reference `algo_distance_fast' on page undefined on input line
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.30 S
Par-K is initialized by choosing $K$ regions to become the initial clu...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no A in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no m in font nullfont!
! Undefined control sequence.
<write> ...ce `algo_seed_random' on page \thepage
\space undefined\on@line .
l.30 ...randomly (Algorithm \ref{algo_seed_random}
) or ii) using the K-means...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `algo_seed_random' on page undefined on input line 30
.
Missing character: There is no ) in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no K in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no + in font nullfont!
Missing character: There is no + in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no A in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
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! Undefined control sequence.
<write> ... `algo_seed_kmeans++' on page \thepage
\space undefined\on@line .
l.30 ...cedure (Algorithm \ref{algo_seed_kmeans++}
, \cite{arthur_k-means++:_...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `algo_seed_kmeans++' on page undefined on input line
30.
Missing character: There is no , in font nullfont!
Missing character: There is no [ in font nullfont!
\citation{arthur_k-means++:_2007}
! Undefined control sequence.
<write> ...: Citation `\@citeb ' on page \thepage
\space undefined\on@line .
l.30 ...d_kmeans++}, \cite{arthur_k-means++:_2007}
). Then, each regions is a...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Citation `arthur_k-means++:_2007' on page undefined on input li
ne 30.
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Missing character: There is no . in font nullfont!
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Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
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Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no g in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
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Missing character: There is no s in font nullfont!
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Missing character: There is no e in font nullfont!
Missing character: There is no u in font nullfont!
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Missing character: There is no t in font nullfont!
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Overfull \hbox (20.0pt too wide) in paragraph at lines 30--31
[]
[]
Overfull \hbox (9.20833pt too wide) in paragraph at lines 30--31
\OML/cmm/m/it/10 K$
[]
Overfull \hbox (6.80557pt too wide) in paragraph at lines 30--31
\OML/cmm/m/it/10 L$
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 30--31
[]
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 30--31
[]
[]
Overfull \hbox (5.43053pt too wide) in paragraph at lines 30--31
[]
[]
Overfull \hbox (9.12497pt too wide) in paragraph at lines 30--31
\OML/cmm/m/it/10 N$
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.32 T
his procedure and is then iteratively repeated until i) reaching the m...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no i in font nullfont!
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Missing character: There is no t in font nullfont!
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Overfull \hbox (20.0pt too wide) in paragraph at lines 32--33
[]
[]
! Undefined control sequence.
l.35 \subsection
{Implementation}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.35 \subsection{I
mplementation}
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no I in font nullfont!
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Missing character: There is no a in font nullfont!
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Missing character: There is no d in font nullfont!
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Missing character: There is no l in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no + in font nullfont!
Missing character: There is no + in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no R in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no z in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no â in font nullfont!
Missing character: There is no in font nullfont!
Missing character: There is no in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no â in font nullfont!
Missing character: There is no in font nullfont!
Missing character: There is no in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no q in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no k in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no E in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no R in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no z in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.36 ...tmaps as shown in Figure \ref{spark_dnase}
. The software source code...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 36.
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no G in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no b in font nullfont!
! Undefined control sequence.
l.36 ... source code is available from Github \url
{https://github.com/romain...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no h in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no : in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no x in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no K in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no D in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no k in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
! Undefined control sequence.
l.36 ...groux/SPar-K} and as Docker container \url
{https://hub.docker.com/r/...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no h in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no : in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
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Overfull \hbox (20.0pt too wide) in paragraph at lines 35--37
[]
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Overfull \hbox (10.86105pt too wide) in paragraph at lines 35--37
[]
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! Undefined control sequence.
l.38 \section
{Results}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.38 \section{R
esults}
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no R in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
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Overfull \hbox (20.0pt too wide) in paragraph at lines 38--39
[]
[]
! LaTeX Error: Environment figure undefined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.40 \begin{figure}
Your command was ignored.
Type I <command> <return> to replace it with another command,
or <return> to continue without it.
! Undefined control sequence.
<argument> \includegraphics
[scale=0.4]{images/ch_spark/supplemental_figure1...
l.41 ...images/ch_spark/supplemental_figure1.pdf}}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no [ in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
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Missing character: There is no 0 in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no 4 in font nullfont!
Missing character: There is no ] in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.41 ...images/ch_spark/supplemental_figure1.pdf}}
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Extra }, or forgotten $.
<argument> ...s/ch_spark/supplemental_figure1.pdf}
l.41 ...images/ch_spark/supplemental_figure1.pdf}}
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Extra }, or forgotten $.
\centerline #1->\@@line {\hss #1\hss }
l.41 ...images/ch_spark/supplemental_figure1.pdf}}
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! LaTeX Error: \caption outside float.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.42 \caption
{Synthethic datasets : \textbf{A} The class signal densities, ...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
! Undefined control sequence.
<write> ...thods_simulated_data' on page \thepage
\space undefined\on@line .
l.42 ...ed in section \ref{methods_simulated_data}
. \textbf{B} A synthetic d...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `methods_simulated_data' on page undefined on input l
ine 42.
! Missing } inserted.
<inserted text>
}
l.42 ...ge of a 100 reads per region in average ($
c$=100) and 0\% noise ($p_...
I've inserted something that you may have forgotten.
(See the <inserted text> above.)
With luck, this will get me unwedged. But if you
really didn't forget anything, try typing `2' now; then
my insertion and my current dilemma will both disappear.
Missing character: There is no c in font nullfont!
Missing character: There is no p in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.42 ...on in average ($c$=100) and 0\% noise ($p_
{s}$=1, $p_{b}$=0) and \te...
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
Missing character: There is no = in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no = in font nullfont!
Missing character: There is no 0 in font nullfont!
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Missing character: There is no a in font nullfont!
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Missing character: There is no 0 in font nullfont!
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Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no g in font nullfont!
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Missing character: There is no ( in font nullfont!
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Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
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Missing character: There is no n in font nullfont!
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Missing character: There is no e in font nullfont!
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Missing character: There is no = in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no = in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no 9 in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
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Missing character: There is no P in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no K in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
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Missing character: There is no i in font nullfont!
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Missing character: There is no i in font nullfont!
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Missing character: There is no t in font nullfont!
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Missing character: There is no s in font nullfont!
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Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
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Missing character: There is no f in font nullfont!
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Missing character: There is no . in font nullfont!
! LaTeX Error: \begin{document} ended by \end{figure}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.44 \end{figure}
Your command was ignored.
Type I <command> <return> to replace it with another command,
or <return> to continue without it.
! Missing } inserted.
<inserted text>
}
l.44 \end{figure}
I've inserted something that you may have forgotten.
(See the <inserted text> above.)
With luck, this will get me unwedged. But if you
really didn't forget anything, try typing `2' now; then
my insertion and my current dilemma will both disappear.
! LaTeX Error: Environment figure undefined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.47 \begin{figure}
Your command was ignored.
Type I <command> <return> to replace it with another command,
or <return> to continue without it.
! Undefined control sequence.
<argument> \includegraphics
[scale=0.4]{images/ch_spark/supplemental_figure2...
l.48 ...images/ch_spark/supplemental_figure2.pdf}}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no [ in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no = in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no 4 in font nullfont!
Missing character: There is no ] in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.48 ...images/ch_spark/supplemental_figure2.pdf}}
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Extra }, or forgotten $.
<argument> ...s/ch_spark/supplemental_figure2.pdf}
l.48 ...images/ch_spark/supplemental_figure2.pdf}}
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Extra }, or forgotten $.
\centerline #1->\@@line {\hss #1\hss }
l.48 ...images/ch_spark/supplemental_figure2.pdf}}
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! LaTeX Error: \caption outside float.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.49 \caption
{\textbf{Clustering accuracy using random seeding :} to compare...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
! Undefined control sequence.
l.50 ...e and legend taken and adapted from \citep
{groux_spar-k:_2019}.}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
! LaTeX Error: \begin{document} ended by \end{figure}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.52 \end{figure}
Your command was ignored.
Type I <command> <return> to replace it with another command,
or <return> to continue without it.
! Missing $ inserted.
<inserted text>
$
l.52 \end{figure}
I've inserted something that you may have forgotten.
(See the <inserted text> above.)
With luck, this will get me unwedged. But if you
really didn't forget anything, try typing `2' now; then
my insertion and my current dilemma will both disappear.
! Missing } inserted.
<inserted text>
}
l.52 \end{figure}
I've inserted something that you may have forgotten.
(See the <inserted text> above.)
With luck, this will get me unwedged. But if you
really didn't forget anything, try typing `2' now; then
my insertion and my current dilemma will both disappear.
! Missing } inserted.
<inserted text>
}
l.52 \end{figure}
I've inserted something that you may have forgotten.
(See the <inserted text> above.)
With luck, this will get me unwedged. But if you
really didn't forget anything, try typing `2' now; then
my insertion and my current dilemma will both disappear.
! LaTeX Error: Environment figure undefined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.55 \begin{figure}
Your command was ignored.
Type I <command> <return> to replace it with another command,
or <return> to continue without it.
! Undefined control sequence.
<argument> \includegraphics
[scale=0.4]{images/ch_spark/supplemental_figure4...
l.56 ...images/ch_spark/supplemental_figure4.pdf}}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no [ in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no = in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no 4 in font nullfont!
Missing character: There is no ] in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.56 ...images/ch_spark/supplemental_figure4.pdf}}
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
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<argument> ...s/ch_spark/supplemental_figure4.pdf}
l.56 ...images/ch_spark/supplemental_figure4.pdf}}
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l.56 ...images/ch_spark/supplemental_figure4.pdf}}
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! LaTeX Error: \caption outside float.
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...
l.57 \caption
{\textbf{Median SSE :} for the simulated ChIP-seq dataset conta...
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l.58 ...e and legend taken and adapted from \citep
{groux_spar-k:_2019}.}
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...
l.60 \end{figure}
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l.60 \end{figure}
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l.60 \end{figure}
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l.60 \end{figure}
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! LaTeX Error: Environment figure undefined.
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l.63 \begin{figure}
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<argument> \includegraphics
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l.64 ...images/ch_spark/supplemental_figure5.pdf}}
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l.64 ...images/ch_spark/supplemental_figure5.pdf}}
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l.64 ...images/ch_spark/supplemental_figure5.pdf}}
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! Extra }, or forgotten $.
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l.64 ...images/ch_spark/supplemental_figure5.pdf}}
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l.65 \caption
{\textbf{Running times :} to compare the run times of each prog...
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l.66 ...e and legend taken and adapted from \citep
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...
l.68 \end{figure}
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l.68 \end{figure}
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! Missing } inserted.
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l.68 \end{figure}
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l.68 \end{figure}
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l.70 \begin{figure}
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<argument> \includegraphics
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l.71 ...images/ch_spark/supplemental_figure8.pdf}}
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l.71 ...images/ch_spark/supplemental_figure8.pdf}}
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l.71 ...images/ch_spark/supplemental_figure8.pdf}}
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! Extra }, or forgotten $.
\centerline #1->\@@line {\hss #1\hss }
l.71 ...images/ch_spark/supplemental_figure8.pdf}}
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! LaTeX Error: \caption outside float.
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...
l.72 \caption
{Nucleosome occupancy, determined by MNase-seq, in bins of 10b...
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<write> ...: Reference `fig_s06' on page \thepage
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l.72 ... method (Supplemental Figure \ref{fig_s06}
). The cluster labels are ...
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LaTeX Warning: Reference `fig_s06' on page undefined on input line 72.
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l.72 ... types were measured using ChIP-Cor \citep
{ambrosini_chip-seq_2016}....
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...
l.74 \end{figure}
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l.74 \end{figure}
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l.74 \end{figure}
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l.74 \end{figure}
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! LaTeX Error: Environment figure undefined.
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...
l.78 \begin{figure}
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<argument> \includegraphics
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l.79 ...s[scale=0.4]{images/ch_spark/figure1.pdf}}
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l.79 ...s[scale=0.4]{images/ch_spark/figure1.pdf}}
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<argument> ...le=0.4]{images/ch_spark/figure1.pdf}
l.79 ...s[scale=0.4]{images/ch_spark/figure1.pdf}}
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deleted material, e.g., by typing `I$}'.
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l.79 ...s[scale=0.4]{images/ch_spark/figure1.pdf}}
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! LaTeX Error: \caption outside float.
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...
l.80 \caption
{Partitioning of DNaseI hypersensitivity profiles around SP1 bi...
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! Undefined control sequence.
l.81 ...e and legend taken and adapted from \citep
{groux_spar-k:_2019}.}
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! LaTeX Error: \begin{document} ended by \end{figure}.
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...
l.83 \end{figure}
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l.83 \end{figure}
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l.83 \end{figure}
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l.83 \end{figure}
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! LaTeX Error: Missing \begin{document}.
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...
l.86 F
irst we compared SPar-K, regular K-means and ChIP-partitioning on synt...
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l.86 ...asets (see Supplemental Figure 1 in \citep
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l.86 ...see Supplemental Figure 1 in \citep{groux_
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l.86 ...tal Figure 1 in \citep{groux_spar-k:_2019}
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l.87
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[]
[]
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[]\OML/cmm/m/it/10 par \OMS/cmsy/m/n/10 ^^@
[]
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\OML/cmm/m/it/10 k \OT1/cmr/m/n/10 :[]
[]
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\OT1/cmr/m/n/10 019)\OML/cmm/m/it/10 exhibitingpropertiesthatareplausibleforChI
P \OMS/cmsy/m/n/10 ^^@
[]
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\OML/cmm/m/it/10 seqprofilesforgenomicregions \OT1/cmr/m/n/10 :
[]
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\OML/cmm/m/it/10 countvectors; \OT1/cmr/m/n/10 3\OML/cmm/m/it/10 classeswithdif
ferentshapes; limitedmisalignment; randomorientationandvariousamountsofbackgrou
ndnoise:$
[]
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...
l.92 F
or benchmarking purposes, we generated several synthetic datasets. Eac...
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Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no E in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no 2 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no + in font nullfont!
Missing character: There is no / in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no k in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no q in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no 3 in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no x in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no k in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no 9 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no 2 in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no k in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no 9 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no 2 in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no G in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no 9 in font nullfont!
Missing character: There is no 5 in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no 4 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
<write> ...: Reference `fig_s01' on page \thepage
\space undefined\on@line .
l.92 ...tandard deviation 40 (Figure \ref{fig_s01}
A upper panel). The second...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `fig_s01' on page undefined on input line 92.
Missing character: There is no A in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no G in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no 9 in font nullfont!
Missing character: There is no 5 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no 4 in font nullfont!
Missing character: There is no 0 in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no c in font nullfont!
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! Undefined control sequence.
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! Undefined control sequence.
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Overfull \hbox (20.0pt too wide) in paragraph at lines 92--93
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Overfull \hbox (10.86105pt too wide) in paragraph at lines 92--93
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.94 \begin{equation}
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.98 w
here $signal_{k}$ is the class characteristic signal density, $backgro...
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.101 F
or each region, a read signal of 1902bp long was randomly sampled fro...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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! Undefined control sequence.
<write> ...: Reference `fig_s01' on page \thepage
\space undefined\on@line .
l.101 ...atasets are shown in Figure \ref{fig_s01}
B and D.\\
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
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and I'll forget about whatever was undefined.
LaTeX Warning: Reference `fig_s01' on page undefined on input line 101.
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.110 P
erformance was assessed by the Adjusted Rand index (see Figure \ref{s...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no P in font nullfont!
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! Undefined control sequence.
<write> ...Reference `spark_ari' on page \thepage
\space undefined\on@line .
l.110 ...ed Rand index (see Figure \ref{spark_ari}
and Supplemental Figure 3...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_ari' on page undefined on input line 110.
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! Undefined control sequence.
l.110 ..._ari} and Supplemental Figure 3 in \citep
{groux_spar-k:_2019}) and ...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
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! Missing $ inserted.
<inserted text>
$
l.110 ...nd Supplemental Figure 3 in \citep{groux_
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I've inserted a begin-math/end-math symbol since I think
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! Extra }, or forgotten $.
l.110 ...al Figure 3 in \citep{groux_spar-k:_2019}
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I've deleted a group-closing symbol because it seems to be
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! Undefined control sequence.
<write> ...Reference `spark_sse' on page \thepage
\space undefined\on@line .
l.110 ... the elbow method (Figure \ref{spark_sse}
). As expected, regular K-...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
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and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_sse' on page undefined on input line 110.
! Undefined control sequence.
<write> ...eference `spark_time' on page \thepage
\space undefined\on@line .
l.110 ...r of at least 20 (Figure \ref{spark_time}
).
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_time' on page undefined on input line 110.
! Missing $ inserted.
<inserted text>
$
l.111
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
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[]\OML/cmm/m/it/10 par \OMS/cmsy/m/n/10 ^^@
[]
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[]
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\OML/cmm/m/it/10 partitioningbyafactorofatleast\OT1/cmr/m/n/10 20(\OML/cmm/m/it
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! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.112 W
e applied SPar-K with $K=3$ to DNaseI accessibility profiles (2bp res...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
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! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.112 ...) in K562 cells (Figure \ref{spark_dnase}
A). The results revealed t...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
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and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 112.
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! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.112 ...ll the clusters (Figure \ref{spark_dnase}
B). To validate these foot...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 112.
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Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.112 ... of nucleosomes (Figure \ref{spark_dnase}
C) and SP1 binding motifs ...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 112.
Missing character: There is no C in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.112 ... binding motifs (Figure \ref{spark_dnase}
D), which was indeed the c...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 112.
Missing character: There is no D in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no D in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.112 ...otprints seen in Figure \ref{spark_dnase}
B with MEME-ChIP and Tomto...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 112.
Missing character: There is no B in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no M in font nullfont!
Missing character: There is no E in font nullfont!
Missing character: There is no M in font nullfont!
Missing character: There is no E in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no I in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
! Undefined control sequence.
l.112 ..._dnase}B with MEME-ChIP and Tomtom \citep
{bailey_meme_2009} discove...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no b in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no y in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.112 ... with MEME-ChIP and Tomtom \citep{bailey_
meme_2009} discovered SP1-...
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Extra }, or forgotten $.
l.112 ...-ChIP and Tomtom \citep{bailey_meme_2009}
discovered SP1-related, N...
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.112 ...and GATA motifs (Figure \ref{spark_dnase}
G) the latter two reported...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 112.
! Missing $ inserted.
<inserted text>
$
l.113
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
Overfull \hbox (20.0pt too wide) in paragraph at lines 112--113
[]
[]
Overfull \hbox (19.76384pt too wide) in paragraph at lines 112--113
\OML/cmm/m/it/10 K \OT1/cmr/m/n/10 =
[]
Overfull \hbox (5.00002pt too wide) in paragraph at lines 112--113
\OT1/cmr/m/n/10 3$
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 112--113
[]
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 112--113
[]
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 112--113
[]
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 112--113
[]
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 112--113
[]
[]
Overfull \hbox (119.49518pt too wide) in paragraph at lines 112--113
[]\OML/cmm/m/it/10 eme[]\OT1/cmr/m/n/10 009\OML/cmm/m/it/10 discoveredSP\OT1/cm
r/m/n/10 1 \OMS/cmsy/m/n/10 ^^@
[]
Overfull \hbox (672.5988pt too wide) in paragraph at lines 112--113
\OML/cmm/m/it/10 related; NFYA=BandGATAmotifs\OT1/cmr/m/n/10 (\OML/cmm/m/it/10
Figure[]G\OT1/cmr/m/n/10 )\OML/cmm/m/it/10 thelattertworeportedlybeinginteracti
onpartnersofSP\OT1/cmr/m/n/10 1\OML/cmm/m/it/10 :Takentogether; theseresultssug
gestthatSPar \OMS/cmsy/m/n/10 ^^@
[]
Overfull \hbox (387.7863pt too wide) in paragraph at lines 112--113
\OML/cmm/m/it/10 KisabletopreciselyrefocusinitiallymisalignedDNaseIprofilesarou
ndSP\OT1/cmr/m/n/10 1\OML/cmm/m/it/10 bindingsites:$
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.114 T
he partitioning of SP1 binding regions reveals distinct chromatin lan...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no T in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no 1 in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no 2 in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no A in font nullfont!
Missing character: There is no G in font nullfont!
Missing character: There is no E in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
! Undefined control sequence.
<write> ...ference `spark_dnase' on page \thepage
\space undefined\on@line .
l.114 ...) and CAGE tags (Figure \ref{spark_dnase}
E and F). Finally, the sym...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Reference `spark_dnase' on page undefined on input line 114.
Missing character: There is no E in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no 3 in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Overfull \hbox (20.0pt too wide) in paragraph at lines 114--115
[]
[]
Overfull \hbox (10.86105pt too wide) in paragraph at lines 114--115
[]
[]
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.116 A
s a second example, we ran the same type of analysis on nucleosome pr...
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no A in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no x in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no T in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no F in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no 8 in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no [ in font nullfont!
\citation{groux_spar-k:_2019}
! Undefined control sequence.
<write> ...: Citation `\@citeb ' on page \thepage
\space undefined\on@line .
l.116 ...tal Figure 8 in \cite{groux_spar-k:_2019}
). Overall, the results co...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
LaTeX Warning: Citation `groux_spar-k:_2019' on page undefined on input line 1
16.
Missing character: There is no ] in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no O in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no y in font nullfont!
! Undefined control sequence.
l.116 ... confirm observations published by \citep
{kundaje_ubiquitous_2012}....
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
Missing character: There is no k in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no j in font nullfont!
Missing character: There is no e in font nullfont!
! Missing $ inserted.
<inserted text>
$
l.116 ...observations published by \citep{kundaje_
ubiquitous_2012}. Strong n...
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Extra }, or forgotten $.
l.116 ...lished by \citep{kundaje_ubiquitous_2012}
. Strong nucleosome arrays...
I've deleted a group-closing symbol because it seems to be
spurious, as in `$x}$'. But perhaps the } is legitimate and
you forgot something else, as in `\hbox{$x}'. In such cases
the way to recover is to insert both the forgotten and the
deleted material, e.g., by typing `I$}'.
! Missing $ inserted.
<inserted text>
$
l.117
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
Overfull \hbox (20.0pt too wide) in paragraph at lines 116--117
[]
[]
Overfull \hbox (5.43053pt too wide) in paragraph at lines 116--117
[]
[]
Overfull \hbox (635.61101pt too wide) in paragraph at lines 116--117
[]\OML/cmm/m/it/10 biquitous[]\OT1/cmr/m/n/10 012\OML/cmm/m/it/10 :Strongnucleo
somearraysbecamevisibleinallclassesafterrealignment; withthreeoutoffourshowings
trongasymmetryinaddition:$
[]
! Undefined control sequence.
l.118 \section
{Conclusions}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
misspelled it (e.g., `\hobx'), type `I' and the correct
spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.118 \section{C
onclusions}
You're in trouble here. Try typing <return> to proceed.
If that doesn't work, type X <return> to quit.
Missing character: There is no C in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no S in font nullfont!
Missing character: There is no P in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no - in font nullfont!
Missing character: There is no K in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no . in font nullfont!
Missing character: There is no C in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no x in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no h in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no v in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no m in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no y in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no , in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no b in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no w in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no f in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no p in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no g in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no l in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no ( in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no c in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no ) in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no n in font nullfont!
Missing character: There is no d in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no a in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no i in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no r in font nullfont!
Missing character: There is no t in font nullfont!
Missing character: There is no o in font nullfont!
Missing character: There is no u in font nullfont!
Missing character: There is no s in font nullfont!
Missing character: There is no e in font nullfont!
Missing character: There is no . in font nullfont!
)
! Emergency stop.
<*> ch_spark.tex
*** (job aborted, no legal \end found)
Here is how much of TeX's memory you used:
27 strings out of 492982
446 string characters out of 6134895
71613 words of memory out of 5000000
3692 multiletter control sequences out of 15000+600000
3948 words of font info for 15 fonts, out of 8000000 for 9000
1141 hyphenation exceptions out of 8191
18i,5n,21p,1975b,112s stack positions out of 5000i,500n,10000p,200000b,80000s
! ==> Fatal error occurred, no output PDF file produced!
Event Timeline
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