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my_thesis.tex
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my_thesis.tex
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% My Thesis
%
% EDOC Template
% 2011
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\input{head/settings_epfl_template.tex}
\input{head/settings_custom.tex} % place your custom packages, etc... in this file!
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% HEAD: Book-Begin
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
\setlength{\parindent}{0pt}
\setlength{\parskip}{0pt} %(needs to be before titlepage and frontmatter to keep the table of contents lists short)
\frontmatter
\input{head/titlepage.tex}
\include{head/dedication}
\setcounter{page}{0}
\include{head/acknowledgements}
% \include{head/preface}
\include{head/abstracts}
\cleardoublepage
\pdfbookmark{\contentsname}{toc}
\tableofcontents
% % Following content is OPTIONAL (List of figures + tables)
% \cleardoublepage
% \phantomsection
% \addcontentsline{toc}{chapter}{List of Figures} % adds an entry to the table of contents
% \listoffigures
%
% \cleardoublepage
% \phantomsection
% \addcontentsline{toc}{chapter}{List of Tables} % adds an entry to the table of contents
% \listoftables
% your list of symbols here, if needed.
% space before each new paragraph according to the template guidelines.
%(needs to be after titlepage and frontmatter to keep the table of contents lists short)
\setlength{\parskip}{1em}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% MAIN: The chapters of the thesis
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\mainmatter
\include{main/ch_introduction}
\include{main/ch_lab_resources}
\include{main/ch_encode_peaks}
\include{main/ch_spark}
\include{main/ch_smile-seq}
\include{main/ch_pwmscan}
\include{main/ch_atac-seq}
\include{main/ch_discussion}
% use to end the last part if the thesis is composed of parts
\addtocontents{toc}{\vspace{\normalbaselineskip}}
\cleardoublepage
\bookmarksetup{startatroot}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% TAIL: Bibliography, Appendix, CV
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{tail/appendix}
\backmatter
\include{tail/biblio}
% Add your glossary here
% Add your index here
% Photographic credits (list of pictures&images that have been used with names of the person holding the copyright for them)
\include{tail/cv}
\end{document}

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