Page MenuHomec4science

biblio.aux
No OneTemporary

File Metadata

Created
Sun, May 12, 22:21

biblio.aux

\relax
\providecommand\hyper@newdestlabel[2]{}
\bibstyle{apalike}
\bibdata{tail/bibliography}
\bibcite{adey_rapid_2010}{{1}{2010}{{Adey et~al.}}{{}}}
\bibcite{aerts_toucan:_2003}{{2}{2003}{{Aerts et~al.}}{{}}}
\bibcite{aibar_scenic:_2017}{{3}{2017}{{Aibar et~al.}}{{}}}
\bibcite{ambrosini_chip-seq_2016}{{4}{2016a}{{Ambrosini et~al.}}{{}}}
\bibcite{ambrosini_chip-seq_2016-1}{{5}{2016b}{{Ambrosini et~al.}}{{}}}
\bibcite{ambrosini_pwmscan:_2018}{{6}{2018}{{Ambrosini et~al.}}{{}}}
\bibcite{ambrosini_signal_2003}{{7}{2003}{{Ambrosini et~al.}}{{}}}
\bibcite{angerer_single_2017}{{8}{2017}{{Angerer et~al.}}{{}}}
\bibcite{arthur_k-means++:_2007}{{9}{2007}{{Arthur and Vassilvitskii}}{{}}}
\bibcite{athar_arrayexpress_2019}{{10}{2019}{{Athar et~al.}}{{}}}
\bibcite{bailey_znf143_2015}{{11}{2015}{{Bailey et~al.}}{{}}}
\@writefile{toc}{\contentsline {chapter}{Bibliography}{149}{section*.66}}
\bibcite{bailey_meme_2009}{{12}{2009}{{Bailey et~al.}}{{}}}
\bibcite{bailey_fitting_1994}{{13}{1994}{{Bailey and Elkan}}{{}}}
\bibcite{barrett_ncbi_2013}{{14}{2013}{{Barrett et~al.}}{{}}}
\bibcite{barski_high-resolution_2007}{{15}{2007}{{Barski et~al.}}{{}}}
\bibcite{beckstette_fast_2006}{{16}{2006}{{Beckstette et~al.}}{{}}}
\bibcite{benos_additivity_2002}{{17}{2002}{{Benos et~al.}}{{}}}
\bibcite{berest_quantification_2018}{{18}{2018}{{Berest et~al.}}{{}}}
\bibcite{berger_universal_2009}{{19}{2009}{{Berger and Bulyk}}{{}}}
\bibcite{boller_defining_2018}{{20}{2018}{{Boller et~al.}}{{}}}
\bibcite{boller_pioneering_2016}{{21}{2016}{{Boller et~al.}}{{}}}
\bibcite{bonev_organization_2016}{{22}{2016}{{Bonev and Cavalli}}{{}}}
\bibcite{boyle_high-resolution_2008}{{23}{2008}{{Boyle et~al.}}{{}}}
\bibcite{bucher_compilation_1986}{{24}{1986}{{Bucher and Trifonov}}{{}}}
\bibcite{buenrostro_transposition_2013}{{25}{2013}{{Buenrostro et~al.}}{{}}}
\bibcite{bulyk_nucleotides_2002}{{26}{2002}{{Bulyk et~al.}}{{}}}
\bibcite{cairns_logic_2009}{{27}{2009}{{Cairns}}{{}}}
\bibcite{castro-mondragon_rsat_2017}{{28}{2017}{{Castro-Mondragon et~al.}}{{}}}
\bibcite{chatr-aryamontri_biogrid_2017}{{29}{2017}{{Chatr-aryamontri et~al.}}{{}}}
\bibcite{cheng_understanding_2012}{{30}{2012}{{Cheng et~al.}}{{}}}
\bibcite{cirillo_opening_2002}{{31}{2002}{{Cirillo et~al.}}{{}}}
\bibcite{consortium_integrated_2012}{{32}{2012}{{Consortium}}{{}}}
\bibcite{dalton_clustering_2009}{{33}{2009}{{Dalton et~al.}}{{}}}
\bibcite{donohoe_identification_2007}{{34}{2007}{{Donohoe et~al.}}{{}}}
\bibcite{dreos_influence_2016}{{35}{2016}{{Dreos et~al.}}{{}}}
\bibcite{dreos_epd_2013}{{36}{2013}{{Dreos et~al.}}{{}}}
\bibcite{dreos_eukaryotic_2017}{{37}{2017}{{Dreos et~al.}}{{}}}
\bibcite{dreos_mga_2018}{{38}{2018}{{Dreos et~al.}}{{}}}
\bibcite{dreos_eukaryotic_2015}{{39}{2015}{{Dreos et~al.}}{{}}}
\bibcite{fan_characterizing_2016}{{40}{2016}{{Fan et~al.}}{{}}}
\bibcite{field_methods_2011}{{41}{2011}{{Field et~al.}}{{}}}
\bibcite{fu_motifviz:_2004}{{42}{2004}{{Fu et~al.}}{{}}}
\bibcite{fu_insulator_2008}{{43}{2008}{{Fu et~al.}}{{}}}
\bibcite{gaffney_controls_2012}{{44}{2012}{{Gaffney et~al.}}{{}}}
\bibcite{geertz_massively_2012}{{45}{2012}{{Geertz et~al.}}{{}}}
\bibcite{gerstein_architecture_2012}{{46}{2012}{{Gerstein et~al.}}{{}}}
\bibcite{ghirlando_ctcf:_2016}{{47}{2016}{{Ghirlando and Felsenfeld}}{{}}}
\bibcite{gonzalez-blas_cistopic:_2019}{{48}{2019}{{Gonz\IeC {\'a}lez-Blas et~al.}}{{}}}
\bibcite{grant_fimo:_2011}{{49}{2011}{{Grant et~al.}}{{}}}
\bibcite{grossman_positional_2018}{{50}{2018}{{Grossman et~al.}}{{}}}
\bibcite{groux_spar-k:_2019}{{51}{2019}{{Groux and Bucher}}{{}}}
\bibcite{guo_high_2012}{{52}{2012}{{Guo et~al.}}{{}}}
\bibcite{hagman_early_2005}{{53}{2005}{{Hagman and Lukin}}{{}}}
\bibcite{heinz_simple_2010}{{54}{2010}{{Heinz et~al.}}{{}}}
\bibcite{heinz_selection_2015}{{55}{2015}{{Heinz et~al.}}{{}}}
\bibcite{henikoff_histone_2015}{{56}{2015}{{Henikoff and Smith}}{{}}}
\bibcite{herrera_characterization_1994}{{57}{1994}{{Herrera and Chaires}}{{}}}
\bibcite{hertz_identification_1990}{{58}{1990}{{Hertz et~al.}}{{}}}
\bibcite{hon_chromasig:_2008}{{59}{2008}{{Hon et~al.}}{{}}}
\bibcite{hyun_writing_2017}{{60}{2017}{{Hyun et~al.}}{{}}}
\bibcite{imbeault_krab_2017}{{61}{2017}{{Imbeault et~al.}}{{}}}
\bibcite{ioshikhes_variety_2011}{{62}{2011}{{Ioshikhes et~al.}}{{}}}
\bibcite{isakova_smile-seq_2017}{{63}{2017}{{Isakova et~al.}}{{}}}
\bibcite{iwafuchi-doi_pioneer_2014}{{64}{2014}{{Iwafuchi-Doi and Zaret}}{{}}}
\bibcite{jiang_nucleosome_2009}{{65}{2009}{{Jiang and Pugh}}{{}}}
\bibcite{jin_h3.3/h2a.z_2009}{{66}{2009}{{Jin et~al.}}{{}}}
\bibcite{jolma_multiplexed_2010}{{67}{2010}{{Jolma et~al.}}{{}}}
\bibcite{jolma_dna-binding_2013}{{68}{2013}{{Jolma et~al.}}{{}}}
\bibcite{jothi_genome-wide_2008}{{69}{2008}{{Jothi et~al.}}{{}}}
\bibcite{kent_blatblast-like_2002}{{70}{2002}{{Kent}}{{}}}
\bibcite{khan_jaspar_2018}{{71}{2018}{{Khan et~al.}}{{}}}
\bibcite{kiselev_sc3:_2017}{{72}{2017}{{Kiselev et~al.}}{{}}}
\bibcite{klemm_chromatin_2019}{{73}{2019}{{Klemm et~al.}}{{}}}
\bibcite{kouzarides_chromatin_2007}{{74}{2007}{{Kouzarides}}{{}}}
\bibcite{kubik_nucleosome_2015}{{75}{2015}{{Kubik et~al.}}{{}}}
\bibcite{kulakovskiy_hocomoco:_2018}{{76}{2018}{{Kulakovskiy et~al.}}{{}}}
\bibcite{kulakovskiy_hocomoco:_2016}{{77}{2016}{{Kulakovskiy et~al.}}{{}}}
\bibcite{kundaje_ubiquitous_2012}{{78}{2012}{{Kundaje et~al.}}{{}}}
\bibcite{kurotaki_transcriptional_2017}{{79}{2017}{{Kurotaki et~al.}}{{}}}
\bibcite{lai_archalign:_2010}{{80}{2010}{{Lai and Buck}}{{}}}
\bibcite{langmead_fast_2012}{{81}{2012}{{Langmead and Salzberg}}{{}}}
\bibcite{langmead_ultrafast_2009}{{82}{2009}{{Langmead et~al.}}{{}}}
\bibcite{latchman_transcription_1997}{{83}{1997}{{Latchman}}{{}}}
\bibcite{lawrence_expectation_1990}{{84}{1990}{{Lawrence and Reilly}}{{}}}
\bibcite{leisch_toolbox_2006}{{85}{2006}{{Leisch}}{{}}}
\bibcite{lenhard_metazoan_2012}{{86}{2012}{{Lenhard et~al.}}{{}}}
\bibcite{li_sequence_2009}{{87}{2009}{{Li et~al.}}{{}}}
\bibcite{li_identification_2019}{{88}{2019}{{Li et~al.}}{{}}}
\bibcite{lizio_gateways_2015}{{89}{2015}{{Lizio et~al.}}{{}}}
\bibcite{losada_cohesin_2014}{{90}{2014}{{Losada}}{{}}}
\bibcite{langst_chromatin_2015}{{91}{2015}{{L\IeC {\"a}ngst and Manelyte}}{{}}}
\bibcite{maerkl_systems_2007}{{92}{2007}{{Maerkl and Quake}}{{}}}
\bibcite{maier_early_2004}{{93}{2004}{{Maier et~al.}}{{}}}
\bibcite{man_non-independence_2001}{{94}{2001}{{Man and Stormo}}{{}}}
\bibcite{marsland_machine_2015-1}{{95}{2015}{{Marsland}}{{}}}
\bibcite{mathelier_jaspar_2014}{{96}{2014}{{Mathelier et~al.}}{{}}}
\bibcite{mcginty_robert_k._and_tan_song_fundamentals_2014}{{97}{2014}{{McGinty Robert K. and Tan Song}}{{}}}
\bibcite{nair_probabilistic_2014}{{98}{2014}{{Nair et~al.}}{{}}}
\bibcite{neph_expansive_2012}{{99}{2012}{{Neph et~al.}}{{}}}
\bibcite{nielsen_catchprofiles:_2012}{{100}{2012}{{Nielsen et~al.}}{{}}}
\bibcite{odom_methods_2011}{{101}{2011}{{Odom}}{{}}}
\bibcite{ong_ctcf:_2014}{{102}{2014}{{Ong and Corces}}{{}}}
\bibcite{orenstein_comparative_2014}{{103}{2014}{{Orenstein and Shamir}}{{}}}
\bibcite{ou_motifstack_2018}{{104}{2018}{{Ou et~al.}}{{}}}
\bibcite{pizzi_fast_2008}{{105}{2008}{{Pizzi and Ukkonen}}{{}}}
\bibcite{pollard_detection_2010}{{106}{2010}{{Pollard et~al.}}{{}}}
\bibcite{quinlan_bedtools:_2010}{{107}{2010}{{Quinlan and Hall}}{{}}}
\bibcite{raney_track_2014}{{108}{2014}{{Raney et~al.}}{{}}}
\bibcite{rico_comparative_2017}{{109}{2017}{{Rico et~al.}}{{}}}
\bibcite{roadmap_epigenomics_consortium_integrative_2015}{{110}{2015}{{{Roadmap Epigenomics Consortium} et~al.}}{{}}}
\bibcite{robertson_genome-wide_2007}{{111}{2007}{{Robertson et~al.}}{{}}}
\bibcite{schneider_sequence_1990}{{112}{1990}{{Schneider and Stephens}}{{}}}
\bibcite{schneider_information_1986}{{113}{1986}{{Schneider et~al.}}{{}}}
\bibcite{schones_dynamic_2008}{{114}{2008}{{Schones et~al.}}{{}}}
\bibcite{schones_statistical_2007}{{115}{2007}{{Schones et~al.}}{{}}}
\bibcite{schutz_mamot:_2008}{{116}{2008}{{Sch\IeC {\"u}tz and Delorenzi}}{{}}}
\bibcite{siepel_evolutionarily_2005}{{117}{2005}{{Siepel et~al.}}{{}}}
\bibcite{soufi_pioneer_2015}{{118}{2015}{{Soufi et~al.}}{{}}}
\bibcite{stedman_cohesins_2008}{{119}{2008}{{Stedman et~al.}}{{}}}
\bibcite{stormo_specificity_1998}{{120}{1998}{{Stormo and Fields}}{{}}}
\bibcite{stormo_identifying_1989}{{121}{1989}{{Stormo and Hartzell}}{{}}}
\bibcite{stormo_determining_2010}{{122}{2010}{{Stormo and Zhao}}{{}}}
\bibcite{takahashi_induction_2006}{{123}{2006}{{Takahashi and Yamanaka}}{{}}}
\bibcite{thurman_accessible_2012}{{124}{2012}{{Thurman et~al.}}{{}}}
\bibcite{trifonov_cracking_2011}{{125}{2011}{{Trifonov}}{{}}}
\bibcite{tsompana_chromatin_2014}{{126}{2014}{{Tsompana and Buck}}{{}}}
\bibcite{turatsinze_using_2008}{{127}{2008}{{Turatsinze et~al.}}{{}}}
\bibcite{vierstra_genomic_2016}{{128}{2016}{{Vierstra and Stamatoyannopoulos}}{{}}}
\bibcite{von_bakel_methods_2011}{{129}{2011}{{von Bakel}}{{}}}
\bibcite{voong_genome-wide_2017}{{130}{2017}{{Voong et~al.}}{{}}}
\bibcite{voss_dynamic_2014}{{131}{2014}{{Voss and Hager}}{{}}}
\bibcite{wang_sequence_2012}{{132}{2012}{{Wang et~al.}}{{}}}
\bibcite{weirauch_determination_2014}{{133}{2014}{{Weirauch et~al.}}{{}}}
\bibcite{weirauch_evaluation_2013}{{134}{2013}{{Weirauch et~al.}}{{}}}
\bibcite{weirauch_methods_2011}{{135}{2011}{{Weirauch and Hughes}}{{}}}
\bibcite{west_nucleosomal_2014}{{136}{2014}{{West et~al.}}{{}}}
\bibcite{wingender_tfclass:_2013}{{137}{2013}{{Wingender et~al.}}{{}}}
\bibcite{wu_biogps:_2016}{{138}{2016}{{Wu et~al.}}{{}}}
\bibcite{zaret_pioneer_2011}{{139}{2011}{{Zaret and Carroll}}{{}}}
\bibcite{zhang_canonical_2014}{{140}{2014}{{Zhang et~al.}}{{}}}
\bibcite{zhao_tred:_2005}{{141}{2005}{{Zhao et~al.}}{{}}}
\bibcite{zhao_inferring_2009}{{142}{2009}{{Zhao et~al.}}{{}}}
\bibcite{zhao_quantitative_2011}{{143}{2011}{{Zhao and Stormo}}{{}}}
\bibcite{zhou_charting_2011}{{144}{2011}{{Zhou et~al.}}{{}}}
\@writefile{toc}{\contentsline {chapter}{Bibliography}{161}{appendix*.67}}
\@setckpt{tail/biblio}{
\setcounter{page}{162}
\setcounter{equation}{0}
\setcounter{enumi}{13}
\setcounter{enumii}{0}
\setcounter{enumiii}{0}
\setcounter{enumiv}{0}
\setcounter{footnote}{0}
\setcounter{mpfootnote}{0}
\setcounter{part}{0}
\setcounter{chapter}{1}
\setcounter{section}{1}
\setcounter{subsection}{0}
\setcounter{subsubsection}{0}
\setcounter{paragraph}{0}
\setcounter{subparagraph}{0}
\setcounter{figure}{19}
\setcounter{table}{0}
\setcounter{NAT@ctr}{144}
\setcounter{FBcaption@count}{0}
\setcounter{ContinuedFloat}{0}
\setcounter{KVtest}{0}
\setcounter{subfigure}{0}
\setcounter{subfigure@save}{0}
\setcounter{lofdepth}{1}
\setcounter{subtable}{0}
\setcounter{subtable@save}{0}
\setcounter{lotdepth}{1}
\setcounter{lips@count}{2}
\setcounter{lstnumber}{1}
\setcounter{Item}{13}
\setcounter{Hfootnote}{0}
\setcounter{bookmark@seq@number}{0}
\setcounter{AM@survey}{0}
\setcounter{ttlp@side}{0}
\setcounter{myparts}{0}
\setcounter{parentequation}{0}
\setcounter{AlgoLine}{23}
\setcounter{algocfline}{12}
\setcounter{algocfproc}{12}
\setcounter{algocf}{12}
\setcounter{float@type}{8}
\setcounter{nlinenum}{0}
\setcounter{lstlisting}{0}
\setcounter{section@level}{0}
}

Event Timeline