Page MenuHomec4science

biblio.aux
No OneTemporary

File Metadata

Created
Tue, Apr 30, 10:12

biblio.aux

\relax
\providecommand\hyper@newdestlabel[2]{}
\bibstyle{apalike}
\bibdata{tail/bibliography}
\bibcite{adey_rapid_2010}{{1}{2010}{{Adey et~al.}}{{}}}
\bibcite{aerts_toucan:_2003}{{2}{2003}{{Aerts et~al.}}{{}}}
\bibcite{aibar_scenic:_2017}{{3}{2017}{{Aibar et~al.}}{{}}}
\bibcite{ambrosini_chip-seq_2016}{{4}{2016a}{{Ambrosini et~al.}}{{}}}
\bibcite{ambrosini_chip-seq_2016-1}{{5}{2016b}{{Ambrosini et~al.}}{{}}}
\bibcite{ambrosini_pwmscan:_2018}{{6}{2018}{{Ambrosini et~al.}}{{}}}
\bibcite{ambrosini_signal_2003}{{7}{2003}{{Ambrosini et~al.}}{{}}}
\bibcite{angerer_single_2017}{{8}{2017}{{Angerer et~al.}}{{}}}
\bibcite{arthur_k-means++:_2007}{{9}{2007}{{Arthur and Vassilvitskii}}{{}}}
\bibcite{athar_arrayexpress_2019}{{10}{2019}{{Athar et~al.}}{{}}}
\bibcite{bailey_znf143_2015}{{11}{2015}{{Bailey et~al.}}{{}}}
\@writefile{toc}{\contentsline {chapter}{Bibliography}{153}{section*.64}}
\bibcite{bailey_meme_2009}{{12}{2009}{{Bailey et~al.}}{{}}}
\bibcite{bailey_fitting_1994}{{13}{1994}{{Bailey and Elkan}}{{}}}
\bibcite{barrett_ncbi_2013}{{14}{2013}{{Barrett et~al.}}{{}}}
\bibcite{barski_high-resolution_2007}{{15}{2007}{{Barski et~al.}}{{}}}
\bibcite{beckstette_fast_2006}{{16}{2006}{{Beckstette et~al.}}{{}}}
\bibcite{benos_additivity_2002}{{17}{2002}{{Benos et~al.}}{{}}}
\bibcite{berest_quantification_2018}{{18}{2018}{{Berest et~al.}}{{}}}
\bibcite{berg_selection_1988}{{19}{1988}{{Berg and von Hippel}}{{}}}
\bibcite{berger_universal_2009}{{20}{2009}{{Berger and Bulyk}}{{}}}
\bibcite{berger_compact_2006}{{21}{2006}{{Berger et~al.}}{{}}}
\bibcite{boller_defining_2018}{{22}{2018}{{Boller et~al.}}{{}}}
\bibcite{boller_pioneering_2016}{{23}{2016}{{Boller et~al.}}{{}}}
\bibcite{bonev_organization_2016}{{24}{2016}{{Bonev and Cavalli}}{{}}}
\bibcite{boyle_high-resolution_2008}{{25}{2008}{{Boyle et~al.}}{{}}}
\bibcite{bucher_compilation_1986}{{26}{1986}{{Bucher and Trifonov}}{{}}}
\bibcite{buenrostro_transposition_2013}{{27}{2013}{{Buenrostro et~al.}}{{}}}
\bibcite{bulyk_exploring_2001}{{28}{2001}{{Bulyk et~al.}}{{}}}
\bibcite{bulyk_nucleotides_2002}{{29}{2002}{{Bulyk et~al.}}{{}}}
\bibcite{cairns_logic_2009}{{30}{2009}{{Cairns}}{{}}}
\bibcite{castro-mondragon_rsat_2017}{{31}{2017}{{Castro-Mondragon et~al.}}{{}}}
\bibcite{chatr-aryamontri_biogrid_2017}{{32}{2017}{{Chatr-aryamontri et~al.}}{{}}}
\bibcite{cheng_understanding_2012}{{33}{2012}{{Cheng et~al.}}{{}}}
\bibcite{cirillo_opening_2002}{{34}{2002}{{Cirillo et~al.}}{{}}}
\bibcite{consortium_integrated_2012}{{35}{2012}{{Consortium}}{{}}}
\bibcite{dalton_clustering_2009}{{36}{2009}{{Dalton et~al.}}{{}}}
\bibcite{donohoe_identification_2007}{{37}{2007}{{Donohoe et~al.}}{{}}}
\bibcite{dreos_influence_2016}{{38}{2016}{{Dreos et~al.}}{{}}}
\bibcite{dreos_epd_2013}{{39}{2013}{{Dreos et~al.}}{{}}}
\bibcite{dreos_eukaryotic_2017}{{40}{2017}{{Dreos et~al.}}{{}}}
\bibcite{dreos_mga_2018}{{41}{2018}{{Dreos et~al.}}{{}}}
\bibcite{dreos_eukaryotic_2015}{{42}{2015}{{Dreos et~al.}}{{}}}
\bibcite{fan_characterizing_2016}{{43}{2016}{{Fan et~al.}}{{}}}
\bibcite{field_methods_2011}{{44}{2011}{{Field et~al.}}{{}}}
\bibcite{fu_motifviz:_2004}{{45}{2004}{{Fu et~al.}}{{}}}
\bibcite{fu_insulator_2008}{{46}{2008}{{Fu et~al.}}{{}}}
\bibcite{gaffney_controls_2012}{{47}{2012}{{Gaffney et~al.}}{{}}}
\bibcite{geertz_massively_2012}{{48}{2012}{{Geertz et~al.}}{{}}}
\bibcite{gerstein_architecture_2012}{{49}{2012}{{Gerstein et~al.}}{{}}}
\bibcite{ghirlando_ctcf:_2016}{{50}{2016}{{Ghirlando and Felsenfeld}}{{}}}
\bibcite{gonzalez-blas_cistopic:_2019}{{51}{2019}{{Gonz\IeC {\'a}lez-Blas et~al.}}{{}}}
\bibcite{grant_fimo:_2011}{{52}{2011}{{Grant et~al.}}{{}}}
\bibcite{grossman_positional_2018}{{53}{2018}{{Grossman et~al.}}{{}}}
\bibcite{groux_spar-k:_2019}{{54}{2019}{{Groux and Bucher}}{{}}}
\bibcite{guo_high_2012}{{55}{2012}{{Guo et~al.}}{{}}}
\bibcite{hagman_early_2005}{{56}{2005}{{Hagman and Lukin}}{{}}}
\bibcite{heinz_simple_2010}{{57}{2010}{{Heinz et~al.}}{{}}}
\bibcite{heinz_selection_2015}{{58}{2015}{{Heinz et~al.}}{{}}}
\bibcite{henikoff_histone_2015}{{59}{2015}{{Henikoff and Smith}}{{}}}
\bibcite{herrera_characterization_1994}{{60}{1994}{{Herrera and Chaires}}{{}}}
\bibcite{hertz_identification_1990}{{61}{1990}{{Hertz et~al.}}{{}}}
\bibcite{hon_chromasig:_2008}{{62}{2008}{{Hon et~al.}}{{}}}
\bibcite{hyun_writing_2017}{{63}{2017}{{Hyun et~al.}}{{}}}
\bibcite{imbeault_krab_2017}{{64}{2017}{{Imbeault et~al.}}{{}}}
\bibcite{ioshikhes_variety_2011}{{65}{2011}{{Ioshikhes et~al.}}{{}}}
\bibcite{isakova_smile-seq_2017}{{66}{2017}{{Isakova et~al.}}{{}}}
\bibcite{iwafuchi-doi_pioneer_2014}{{67}{2014}{{Iwafuchi-Doi and Zaret}}{{}}}
\bibcite{jiang_nucleosome_2009}{{68}{2009}{{Jiang and Pugh}}{{}}}
\bibcite{jin_h3.3/h2a.z_2009}{{69}{2009}{{Jin et~al.}}{{}}}
\bibcite{jolma_multiplexed_2010}{{70}{2010}{{Jolma et~al.}}{{}}}
\bibcite{jolma_dna-binding_2013}{{71}{2013}{{Jolma et~al.}}{{}}}
\bibcite{jothi_genome-wide_2008}{{72}{2008}{{Jothi et~al.}}{{}}}
\bibcite{kent_blatblast-like_2002}{{73}{2002}{{Kent}}{{}}}
\bibcite{khan_jaspar_2018}{{74}{2018}{{Khan et~al.}}{{}}}
\bibcite{kiselev_sc3:_2017}{{75}{2017}{{Kiselev et~al.}}{{}}}
\bibcite{klemm_chromatin_2019}{{76}{2019}{{Klemm et~al.}}{{}}}
\bibcite{kouzarides_chromatin_2007}{{77}{2007}{{Kouzarides}}{{}}}
\bibcite{kubik_nucleosome_2015}{{78}{2015}{{Kubik et~al.}}{{}}}
\bibcite{kulakovskiy_hocomoco:_2018}{{79}{2018}{{Kulakovskiy et~al.}}{{}}}
\bibcite{kulakovskiy_hocomoco:_2016}{{80}{2016}{{Kulakovskiy et~al.}}{{}}}
\bibcite{kundaje_ubiquitous_2012}{{81}{2012}{{Kundaje et~al.}}{{}}}
\bibcite{kurotaki_transcriptional_2017}{{82}{2017}{{Kurotaki et~al.}}{{}}}
\bibcite{lai_archalign:_2010}{{83}{2010}{{Lai and Buck}}{{}}}
\bibcite{langmead_fast_2012}{{84}{2012}{{Langmead and Salzberg}}{{}}}
\bibcite{langmead_ultrafast_2009}{{85}{2009}{{Langmead et~al.}}{{}}}
\bibcite{latchman_transcription_1997}{{86}{1997}{{Latchman}}{{}}}
\bibcite{lawrence_expectation_1990}{{87}{1990}{{Lawrence and Reilly}}{{}}}
\bibcite{leisch_toolbox_2006}{{88}{2006}{{Leisch}}{{}}}
\bibcite{lenhard_metazoan_2012}{{89}{2012}{{Lenhard et~al.}}{{}}}
\bibcite{li_sequence_2009}{{90}{2009}{{Li et~al.}}{{}}}
\bibcite{li_identification_2019}{{91}{2019}{{Li et~al.}}{{}}}
\bibcite{lizio_gateways_2015}{{92}{2015}{{Lizio et~al.}}{{}}}
\bibcite{losada_cohesin_2014}{{93}{2014}{{Losada}}{{}}}
\bibcite{langst_chromatin_2015}{{94}{2015}{{L\IeC {\"a}ngst and Manelyte}}{{}}}
\bibcite{maerkl_systems_2007}{{95}{2007}{{Maerkl and Quake}}{{}}}
\bibcite{maier_early_2004}{{96}{2004}{{Maier et~al.}}{{}}}
\bibcite{man_non-independence_2001}{{97}{2001}{{Man and Stormo}}{{}}}
\bibcite{marsland_machine_2015-1}{{98}{2015}{{Marsland}}{{}}}
\bibcite{mathelier_jaspar_2014}{{99}{2014}{{Mathelier et~al.}}{{}}}
\bibcite{mcginty_robert_k._and_tan_song_fundamentals_2014}{{100}{2014}{{McGinty Robert K. and Tan Song}}{{}}}
\bibcite{mukherjee_rapid_2004}{{101}{2004}{{Mukherjee et~al.}}{{}}}
\bibcite{nair_probabilistic_2014}{{102}{2014}{{Nair et~al.}}{{}}}
\bibcite{neph_expansive_2012}{{103}{2012}{{Neph et~al.}}{{}}}
\bibcite{nielsen_catchprofiles:_2012}{{104}{2012}{{Nielsen et~al.}}{{}}}
\bibcite{odom_methods_2011}{{105}{2011}{{Odom}}{{}}}
\bibcite{ong_ctcf:_2014}{{106}{2014}{{Ong and Corces}}{{}}}
\bibcite{orenstein_comparative_2014}{{107}{2014}{{Orenstein and Shamir}}{{}}}
\bibcite{ou_motifstack_2018}{{108}{2018}{{Ou et~al.}}{{}}}
\bibcite{pizzi_fast_2008}{{109}{2008}{{Pizzi and Ukkonen}}{{}}}
\bibcite{pollard_detection_2010}{{110}{2010}{{Pollard et~al.}}{{}}}
\bibcite{quinlan_bedtools:_2010}{{111}{2010}{{Quinlan and Hall}}{{}}}
\bibcite{raney_track_2014}{{112}{2014}{{Raney et~al.}}{{}}}
\bibcite{rico_comparative_2017}{{113}{2017}{{Rico et~al.}}{{}}}
\bibcite{roadmap_epigenomics_consortium_integrative_2015}{{114}{2015}{{{Roadmap Epigenomics Consortium} et~al.}}{{}}}
\bibcite{robertson_genome-wide_2007}{{115}{2007}{{Robertson et~al.}}{{}}}
\bibcite{roulet_high-throughput_2002}{{116}{2002}{{Roulet et~al.}}{{}}}
\bibcite{schneider_sequence_1990}{{117}{1990}{{Schneider and Stephens}}{{}}}
\bibcite{schneider_information_1986}{{118}{1986}{{Schneider et~al.}}{{}}}
\bibcite{schones_dynamic_2008}{{119}{2008}{{Schones et~al.}}{{}}}
\bibcite{schones_statistical_2007}{{120}{2007}{{Schones et~al.}}{{}}}
\bibcite{schutz_mamot:_2008}{{121}{2008}{{Sch\IeC {\"u}tz and Delorenzi}}{{}}}
\bibcite{siepel_evolutionarily_2005}{{122}{2005}{{Siepel et~al.}}{{}}}
\bibcite{soufi_pioneer_2015}{{123}{2015}{{Soufi et~al.}}{{}}}
\bibcite{stedman_cohesins_2008}{{124}{2008}{{Stedman et~al.}}{{}}}
\bibcite{stormo_specificity_1998}{{125}{1998}{{Stormo and Fields}}{{}}}
\bibcite{stormo_identifying_1989}{{126}{1989}{{Stormo and Hartzell}}{{}}}
\bibcite{stormo_determining_2010}{{127}{2010}{{Stormo and Zhao}}{{}}}
\bibcite{takahashi_induction_2006}{{128}{2006}{{Takahashi and Yamanaka}}{{}}}
\bibcite{thurman_accessible_2012}{{129}{2012}{{Thurman et~al.}}{{}}}
\bibcite{trifonov_cracking_2011}{{130}{2011}{{Trifonov}}{{}}}
\bibcite{tsompana_chromatin_2014}{{131}{2014}{{Tsompana and Buck}}{{}}}
\bibcite{tuerk_systematic_1990}{{132}{1990}{{Tuerk and Gold}}{{}}}
\bibcite{turatsinze_using_2008}{{133}{2008}{{Turatsinze et~al.}}{{}}}
\bibcite{vierstra_genomic_2016}{{134}{2016}{{Vierstra and Stamatoyannopoulos}}{{}}}
\bibcite{von_bakel_methods_2011}{{135}{2011}{{von Bakel}}{{}}}
\bibcite{voong_genome-wide_2017}{{136}{2017}{{Voong et~al.}}{{}}}
\bibcite{voss_dynamic_2014}{{137}{2014}{{Voss and Hager}}{{}}}
\bibcite{wang_sequence_2012}{{138}{2012}{{Wang et~al.}}{{}}}
\bibcite{weirauch_determination_2014}{{139}{2014}{{Weirauch et~al.}}{{}}}
\bibcite{weirauch_evaluation_2013}{{140}{2013}{{Weirauch et~al.}}{{}}}
\bibcite{weirauch_methods_2011}{{141}{2011}{{Weirauch and Hughes}}{{}}}
\bibcite{west_nucleosomal_2014}{{142}{2014}{{West et~al.}}{{}}}
\bibcite{wingender_tfclass:_2013}{{143}{2013}{{Wingender et~al.}}{{}}}
\bibcite{wu_biogps:_2016}{{144}{2016}{{Wu et~al.}}{{}}}
\bibcite{zaret_pioneer_2011}{{145}{2011}{{Zaret and Carroll}}{{}}}
\bibcite{zhang_canonical_2014}{{146}{2014}{{Zhang et~al.}}{{}}}
\bibcite{zhao_tred:_2005}{{147}{2005}{{Zhao et~al.}}{{}}}
\bibcite{zhao_inferring_2009}{{148}{2009}{{Zhao et~al.}}{{}}}
\bibcite{zhao_quantitative_2011}{{149}{2011}{{Zhao and Stormo}}{{}}}
\bibcite{zhou_charting_2011}{{150}{2011}{{Zhou et~al.}}{{}}}
\@writefile{toc}{\contentsline {chapter}{Bibliography}{165}{appendix*.65}}
\@setckpt{tail/biblio}{
\setcounter{page}{166}
\setcounter{equation}{0}
\setcounter{enumi}{8}
\setcounter{enumii}{0}
\setcounter{enumiii}{0}
\setcounter{enumiv}{0}
\setcounter{footnote}{0}
\setcounter{mpfootnote}{0}
\setcounter{part}{0}
\setcounter{chapter}{1}
\setcounter{section}{4}
\setcounter{subsection}{4}
\setcounter{subsubsection}{0}
\setcounter{paragraph}{0}
\setcounter{subparagraph}{0}
\setcounter{figure}{25}
\setcounter{table}{0}
\setcounter{NAT@ctr}{150}
\setcounter{FBcaption@count}{0}
\setcounter{ContinuedFloat}{0}
\setcounter{KVtest}{0}
\setcounter{subfigure}{0}
\setcounter{subfigure@save}{0}
\setcounter{lofdepth}{1}
\setcounter{subtable}{0}
\setcounter{subtable@save}{0}
\setcounter{lotdepth}{1}
\setcounter{lips@count}{0}
\setcounter{lstnumber}{1}
\setcounter{Item}{8}
\setcounter{Hfootnote}{0}
\setcounter{bookmark@seq@number}{0}
\setcounter{AM@survey}{0}
\setcounter{ttlp@side}{0}
\setcounter{myparts}{0}
\setcounter{parentequation}{0}
\setcounter{AlgoLine}{23}
\setcounter{algocfline}{11}
\setcounter{algocfproc}{11}
\setcounter{algocf}{11}
\setcounter{float@type}{8}
\setcounter{nlinenum}{0}
\setcounter{lstlisting}{0}
\setcounter{section@level}{0}
}

Event Timeline