cmake_minimum_required(VERSION 3.9.2)
project(basic_lopo)

SET(CMAKE_CXX_STANDARD 11)
SET(CMAKE_CXX_STANDARD_REQUIRED ON)

if(NOT CMAKE_BUILD_TYPE)
    set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE)
endif(NOT CMAKE_BUILD_TYPE)

SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -pedantic")
SET(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3")
option(test "Build tests." OFF)

add_executable(basic_lopo.x src/main.cpp src/basicnet.cpp src/database.cpp src/dataitem.cpp src/measurement.cpp)

find_package(Eigen3 3.3 REQUIRED)
target_link_libraries(basic_lopo.x PUBLIC Eigen3::Eigen)

set(eddl_DIR "/home/andrea/eddl/lib/cmake/eddl")
find_package(eddl REQUIRED)
target_link_libraries(basic_lopo.x PUBLIC eddl)

if (test)
    enable_testing()
    find_package(GTest)
    if (NOT GTEST_FOUND)
        SET(GTEST_INCLUDE_DIRS ${CMAKE_SOURCE_DIR}/include)
        SET(GTEST_BOTH_LIBRARIES libgtest.a libgtest_main.a)
    endif(NOT GTEST_FOUND)
    include_directories(${GTEST_INCLUDE_DIRS})
    add_executable(testGenMot src/test_main.cpp src/motif.cpp src/site.cpp src/treatment.cpp )
    target_link_libraries(testGenMot ${GTEST_BOTH_LIBRARIES} pthread)
    add_test(Genomic_motifs testGenMot)
endif(test)

find_package(Doxygen)
if (DOXYGEN_FOUND)
    add_custom_target(doc ${DOXYGEN_EXECUTABLE} ${CMAKE_SOURCE_DIR}/Doxyfile
                      WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
                      COMMENT "Generating API documentation with Doxygen" VERBATIM)
endif(DOXYGEN_FOUND)