R9868/install_pyeddl.sh
0614822bd28bmaster

install_pyeddl.sh
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			#!/bin/sh

			# DEPENDENCIES:
			# conda install numpy pybind11 pytest

			# might want to set up a conda environment

			git clone --recurse-submodules https://github.com/deephealthproject/pyeddl.git

			export EDDL_DIR=/home/$USER/eddl
			cd pyeddl/
			PYEDDL_FOLDER=$(pwd)
			cd third_party/eddl

			# This line is necessary because otherwise building shared library fails (as stated in the pyeddl installation guide) but no issue on eddl's github is open
			git apply ../../eddl_0.3.patch

			# Compiling eddl
			mkdir build
			cd build
			cmake .. -DEDDL_SHARED=ON -DBUILD_PYTHON=ON -DBUILD_TESTS=ON -DBUILD_TARGET=CPU -DBUILD_EXAMPLES=ON -DCMAKE_INSTALL_PREFIX=$EDDL_DIR
			make -j$(nproc)

			# Moving relevant files in /home/$USER/eddl/include and /home/$USER/eddl/lib
			make install

			# If compiled for GPU here must export the EDDL_WITH_CUDA environment variable
			#
			#
			#


			cd $PYEDDL_FOLDER
			python3 setup.py install