Homec4science
Diffusion akantu (bugfix/69-segmentation-fault-caused-by-model-applybc-aka-fromtraction-trac-traction) Browse

rAKA/test/ci/manylinux:2014_x86_64/Dockerfile
bf637b29f909bugfix/69-segmentation…

Last Change
Raw File

Dockerfile
View Options

FROM quay.io/pypa/manylinux2014_x86_64 as builder
ENV LANG en_US.UTF-8
RUN yum install -y xz openssl-devel perl-devel
# What we want to install and how we want to install it
# is specified in a manifest file (spack.yaml)
RUN mkdir -p /softs/spack-environment
COPY spack.yaml /softs/spack-environment
RUN adduser -u 1000 -s /bin/false app
RUN mkdir -p /softs && chown -R app:app /softs
USER app
RUN cd /softs && git clone https://github.com/spack/spack.git -b v0.20.2
#RUN cd /softs && git clone https://gitlab.com/epfl-lsms/spack-packages.git
COPY packages.yaml /softs/spack/etc/spack
#COPY repos.yaml /softs/spack/etc/spack
# Install the software, remove unnecessary deps
RUN /opt/python/cp36-cp36m/bin/python /softs/spack/bin/spack -e /softs/spack-environment install && \
/opt/python/cp36-cp36m/bin/python /softs/spack/bin/spack gc -y
# Strip all the binaries
RUN find -L /softs/view/* -type f -exec readlink -f '{}' \; | \
xargs file -i | \
grep 'charset=binary' | \
grep 'x-executable\|x-archive\|x-sharedlib' | \
awk -F: '{print $1}' | xargs strip -s
USER root
# Modifications to the environment that are necessary to run
RUN cd /softs/spack-environment && \
/opt/python/cp36-cp36m/bin/python /softs/spack/bin/spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Bare OS image to run the installed executables
FROM quay.io/pypa/manylinux2014_x86_64
RUN yum install -y xz zlib-devel ccache
RUN adduser -u 1000 -s /bin/false app
COPY --from=builder /softs/spack /softs/spack
COPY --from=builder /softs/spack-environment /softs/spack-environment
COPY --from=builder /softs/software /softs/software
COPY --from=builder /softs/view /softs/view
COPY --from=builder /etc/profile.d/z10_spack_environment.sh /etc/profile.d/z10_spack_environment.sh
RUN chown -R app:app /softs
RUN mkdir -p /build && chown app:app /build
ENV CROSS_ROOT /opt/rh/devtoolset-10/root/usr/bin
ENV AS=${CROSS_ROOT}/as \
AR=${CROSS_ROOT}/ar \
CC=${CROSS_ROOT}/gcc \
CPP=${CROSS_ROOT}/cpp \
CXX=${CROSS_ROOT}/g++ \
LD=${CROSS_ROOT}/ld \
FC=${CROSS_ROOT}/gfortran \
CMAKE_PREFIX_PATH=/soft/view
COPY install-pip.sh /build
RUN /build/install-pip.sh
COPY Toolchain.cmake ${CROSS_ROOT}/../lib/
ENV CMAKE_TOOLCHAIN_FILE ${CROSS_ROOT}/../lib/Toolchain.cmake
USER app
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l"]
c4science · Help