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fe_engine.hh
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			/**
			* @file fe_engine.hh
			*
			* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
			* @author Nicolas Richart <nicolas.richart@epfl.ch>
			*
			* @date creation: Fri Jun 18 2010
			* @date last modification: Tue Feb 20 2018
			*
			* @brief FEM class
			*
			*
			* Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			/* -------------------------------------------------------------------------- */
			#include "element_type_map.hh"
			#include "mesh_events.hh"
			/* -------------------------------------------------------------------------- */
			#include <functional>
			/* -------------------------------------------------------------------------- */

			#ifndef AKANTU_FE_ENGINE_HH_
			#define AKANTU_FE_ENGINE_HH_

			namespace akantu {
			class Mesh;
			class Integrator;
			class ShapeFunctions;
			class DOFManager;
			class Element;
			} // namespace akantu

			/* -------------------------------------------------------------------------- */
			namespace akantu {
			/* -------------------------------------------------------------------------- */

			/**
			* The generic FEEngine class derived in a FEEngineTemplate class
			* containing the
			* shape functions and the integration method
			*/
			class FEEngine : public MeshEventHandler {
			/* ------------------------------------------------------------------------ */
			/* Constructors/Destructors */
			/* ------------------------------------------------------------------------ */
			public:
			FEEngine(Mesh & mesh, UInt element_dimension = _all_dimensions,
			const ID & id = "fem");

			~FEEngine() override;

			/* ------------------------------------------------------------------------ */
			/* Methods */
			/* ------------------------------------------------------------------------ */
			public:
			/// pre-compute all the shape functions, their derivatives and the jacobians
			virtual void
			initShapeFunctions(GhostType ghost_type = _not_ghost) = 0;

			/// extract the nodal values and store them per element
			template <typename T>
			static void extractNodalToElementField(
			const Mesh & mesh, const Array<T> & nodal_f, Array<T> & elemental_f,
			ElementType type, GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter);

			/// filter a field
			template <typename T>
			static void
			filterElementalData(const Mesh & mesh, const Array<T> & elem_f,
			Array<T> & filtered_f, ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter);

			/* ------------------------------------------------------------------------ */
			/* Integration method bridges */
			/* ------------------------------------------------------------------------ */
			/// integrate f for all elements of type "type"
			virtual void
			integrate(const Array<Real> & f, Array<Real> & intf,
			UInt nb_degree_of_freedom, ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// integrate a scalar value f on all elements of type "type"
			virtual Real
			integrate(const Array<Real> & f, ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// integrate f for all integration points of type "type" but don't sum over
			/// all integration points
			virtual void integrateOnIntegrationPoints(
			const Array<Real> & f, Array<Real> & intf, UInt nb_degree_of_freedom,
			ElementType type, GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// integrate one element scalar value on all elements of type "type"
			virtual Real integrate(const Vector<Real> & f, ElementType type,
			UInt index,
			GhostType ghost_type = _not_ghost) const = 0;

			/* ------------------------------------------------------------------------ */
			/* compatibility with old FEEngine fashion */
			/* ------------------------------------------------------------------------ */
			/// get the number of integration points
			virtual UInt
			getNbIntegrationPoints(ElementType type,
			GhostType ghost_type = _not_ghost) const = 0;

			/// get the precomputed shapes
			const virtual Array<Real> &
			getShapes(ElementType type, GhostType ghost_type = _not_ghost,
			UInt id = 0) const = 0;

			/// get the derivatives of shapes
			const virtual Array<Real> &
			getShapesDerivatives(ElementType type,
			GhostType ghost_type = _not_ghost,
			UInt id = 0) const = 0;

			/// get integration points
			const virtual Matrix<Real> &
			getIntegrationPoints(ElementType type,
			GhostType ghost_type = _not_ghost) const = 0;

			/* ------------------------------------------------------------------------ */
			/* Shape method bridges */
			/* ------------------------------------------------------------------------ */
			/// Compute the gradient nablauq on the integration points of an element type
			/// from nodal values u
			virtual void gradientOnIntegrationPoints(
			const Array<Real> & u, Array<Real> & nablauq,
			UInt nb_degree_of_freedom, ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// Interpolate a nodal field u at the integration points of an element type
			/// -> uq
			virtual void interpolateOnIntegrationPoints(
			const Array<Real> & u, Array<Real> & uq, UInt nb_degree_of_freedom,
			ElementType type, GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// Interpolate a nodal field u at the integration points of many element
			/// types -> uq
			virtual void interpolateOnIntegrationPoints(
			const Array<Real> & u, ElementTypeMapArray<Real> & uq,
			const ElementTypeMapArray<UInt> * filter_elements = nullptr) const = 0;

			/// pre multiplies a tensor by the shapes derivaties
			virtual void
			computeBtD(const Array<Real> & Ds, Array<Real> & BtDs,
			ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// left and right multiplies a tensor by the shapes derivaties
			virtual void
			computeBtDB(const Array<Real> & Ds, Array<Real> & BtDBs, UInt order_d,
			ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// left multiples a vector by the shape functions
			virtual void
			computeNtb(const Array<Real> & bs, Array<Real> & Ntbs,
			ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// Compute the interpolation point position in the global coordinates for
			/// many element types
			virtual void computeIntegrationPointsCoordinates(
			ElementTypeMapArray<Real> & integration_points_coordinates,
			const ElementTypeMapArray<UInt> * filter_elements = nullptr) const = 0;

			/// Compute the interpolation point position in the global coordinates for an
			/// element type
			virtual void computeIntegrationPointsCoordinates(
			Array<Real> & integration_points_coordinates, ElementType type,
			GhostType ghost_type = _not_ghost,
			const Array<UInt> & filter_elements = empty_filter) const = 0;

			/// Build pre-computed matrices for interpolation of field form integration
			/// points at other given positions (interpolation_points)
			virtual void initElementalFieldInterpolationFromIntegrationPoints(
			const ElementTypeMapArray<Real> & interpolation_points_coordinates,
			ElementTypeMapArray<Real> & interpolation_points_coordinates_matrices,
			ElementTypeMapArray<Real> & integration_points_coordinates_inv_matrices,
			const ElementTypeMapArray<UInt> * element_filter) const = 0;

			/// interpolate field at given position (interpolation_points) from given
			/// values of this field at integration points (field)
			virtual void interpolateElementalFieldFromIntegrationPoints(
			const ElementTypeMapArray<Real> & field,
			const ElementTypeMapArray<Real> & interpolation_points_coordinates,
			ElementTypeMapArray<Real> & result, GhostType ghost_type,
			const ElementTypeMapArray<UInt> * element_filter) const = 0;

			/// Interpolate field at given position from given values of this field at
			/// integration points (field)
			/// using matrices precomputed with
			/// initElementalFieldInterplationFromIntegrationPoints
			virtual void interpolateElementalFieldFromIntegrationPoints(
			const ElementTypeMapArray<Real> & field,
			const ElementTypeMapArray<Real> &
			interpolation_points_coordinates_matrices,
			const ElementTypeMapArray<Real> &
			integration_points_coordinates_inv_matrices,
			ElementTypeMapArray<Real> & result, GhostType ghost_type,
			const ElementTypeMapArray<UInt> * element_filter) const = 0;

			/// interpolate on a phyiscal point inside an element
			virtual void interpolate(const Vector<Real> & real_coords,
			const Matrix<Real> & nodal_values,
			Vector<Real> & interpolated,
			const Element & element) const = 0;

			/// compute the shape on a provided point
			virtual void
			computeShapes(const Vector<Real> & real_coords, UInt elem,
			ElementType type, Vector<Real> & shapes,
			GhostType ghost_type = _not_ghost) const = 0;

			/// compute the shape derivatives on a provided point
			virtual void
			computeShapeDerivatives(const Vector<Real> & real_coords, UInt element,
			ElementType type,
			Matrix<Real> & shape_derivatives,
			GhostType ghost_type = _not_ghost) const = 0;

			/// assembles the lumped version of @f[ \int N^t rho N @f]
			virtual void assembleFieldLumped(
			const std::function<void(Matrix<Real> &, const Element &)> & field_funct,
			const ID & matrix_id, const ID & dof_id, DOFManager & dof_manager,
			ElementType type, GhostType ghost_type = _not_ghost) const = 0;

			/// assembles the matrix @f[ \int N^t rho N @f]
			virtual void assembleFieldMatrix(
			const std::function<void(Matrix<Real> &, const Element &)> & field_funct,
			const ID & matrix_id, const ID & dof_id, DOFManager & dof_manager,
			ElementType type, GhostType ghost_type = _not_ghost) const = 0;

			/* ------------------------------------------------------------------------ */
			/* Other methods */
			/* ------------------------------------------------------------------------ */

			/// pre-compute normals on integration points
			virtual void computeNormalsOnIntegrationPoints(
			GhostType ghost_type = _not_ghost) = 0;

			/// pre-compute normals on integration points
			virtual void computeNormalsOnIntegrationPoints(
			const Array<Real> & /field/,
			GhostType /ghost_type/ = _not_ghost) {
			AKANTU_TO_IMPLEMENT();
			}

			/// pre-compute normals on integration points
			virtual void computeNormalsOnIntegrationPoints(
			const Array<Real> & /field/, Array<Real> & /normal/,
			ElementType /type/,
			GhostType /ghost_type/ = _not_ghost) const {
			AKANTU_TO_IMPLEMENT();
			}

			/// function to print the containt of the class
			virtual void printself(std::ostream & stream, int indent = 0) const;

			private:
			/// initialise the class
			void init();

			/* ------------------------------------------------------------------------ */
			/* Accessors */
			/* ------------------------------------------------------------------------ */
			public:
			using ElementTypesIteratorHelper =
			ElementTypeMapArray<Real, ElementType>::ElementTypesIteratorHelper;

			ElementTypesIteratorHelper elementTypes(UInt dim = _all_dimensions,
			GhostType ghost_type = _not_ghost,
			ElementKind kind = _ek_regular) const;

			/// get the dimension of the element handeled by this fe_engine object
			AKANTU_GET_MACRO(ElementDimension, element_dimension, UInt);

			/// get the mesh contained in the fem object
			AKANTU_GET_MACRO(Mesh, mesh, const Mesh &);
			/// get the mesh contained in the fem object
			AKANTU_GET_MACRO_NOT_CONST(Mesh, mesh, Mesh &);

			/// get the in-radius of an element
			static inline Real getElementInradius(const Matrix<Real> & coord,
			ElementType type);

			/// get the normals on integration points
			AKANTU_GET_MACRO_BY_ELEMENT_TYPE_CONST(NormalsOnIntegrationPoints,
			normals_on_integration_points, Real);

			/// get cohesive element type for a given facet type
			static inline ElementType
			getCohesiveElementType(ElementType type_facet);

			/// get igfem element type for a given regular type
			static inline Vector<ElementType>
			getIGFEMElementTypes(ElementType type);

			/// get the interpolation element associated to an element type
			static inline InterpolationType
			getInterpolationType(ElementType el_type);

			/// get the shape function class (probably useless: see getShapeFunction in
			/// fe_engine_template.hh)
			virtual const ShapeFunctions & getShapeFunctionsInterface() const = 0;
			/// get the integrator class (probably useless: see getIntegrator in
			/// fe_engine_template.hh)
			virtual const Integrator & getIntegratorInterface() const = 0;

			AKANTU_GET_MACRO(ID, id, ID);

			/* ------------------------------------------------------------------------ */
			/* Class Members */
			/* ------------------------------------------------------------------------ */
			protected:
			ID id;

			/// spatial dimension of the problem
			UInt element_dimension;

			/// the mesh on which all computation are made
			Mesh & mesh;

			/// normals at integration points
			ElementTypeMapArray<Real> normals_on_integration_points;
			};

			/* -------------------------------------------------------------------------- */
			/* inline functions */
			/* -------------------------------------------------------------------------- */

			/// standard output stream operator
			inline std::ostream & operator<<(std::ostream & stream,
			const FEEngine & _this) {
			_this.printself(stream);
			return stream;
			}

			} // namespace akantu

			#include "fe_engine_inline_impl.hh"
			#include "fe_engine_template.hh"

			#endif /* AKANTU_FE_ENGINE_HH_ */

rAKA/src/fe_engine/fe_engine.hh33327d9f46e4bugfixes/32-python…

fe_engine.hhView Options

rAKA/src/fe_engine/fe_engine.hh
33327d9f46e4bugfixes/32-python…

fe_engine.hh
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