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aka_csr.hh
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			/**
			* @file aka_csr.hh
			*
			* @author Nicolas Richart <nicolas.richart@epfl.ch>
			*
			* @date creation: Wed Apr 20 2011
			* @date last modification: Sun Dec 03 2017
			*
			* @brief A compresed sparse row structure based on akantu Arrays
			*
			* @section LICENSE
			*
			* Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			/* -------------------------------------------------------------------------- */
			#include "aka_array.hh"
			#include "aka_common.hh"

			/* -------------------------------------------------------------------------- */

			#ifndef __AKANTU_AKA_CSR_HH__
			#define __AKANTU_AKA_CSR_HH__

			namespace akantu {

			/**
			* This class can be used to store the structure of a sparse matrix or for
			* vectors with variable number of component per element
			*
			* @param nb_rows number of rows of a matrix or size of a vector.
			*/
			template <typename T> class CSR {
			/* ------------------------------------------------------------------------ */
			/* Constructors/Destructors */
			/* ------------------------------------------------------------------------ */
			public:
			explicit CSR(UInt nb_rows = 0)
			: nb_rows(nb_rows), rows_offsets(nb_rows + 1, 1, "rows_offsets"),
			rows(0, 1, "rows") {
			rows_offsets.clear();
			};

			virtual ~CSR() = default;

			/* ------------------------------------------------------------------------ */
			/* Methods */
			/* ------------------------------------------------------------------------ */
			public:
			/// does nothing
			inline void beginInsertions(){};

			/// insert a new entry val in row row
			inline UInt insertInRow(UInt row, const T & val) {
			UInt pos = rows_offsets(row)++;
			rows(pos) = val;
			return pos;
			}

			/// access an element of the matrix
			inline const T & operator()(UInt row, UInt col) const {
			AKANTU_DEBUG_ASSERT(rows_offsets(row + 1) - rows_offsets(row) > col,
			"This element is not present in this CSR");
			return rows(rows_offsets(row) + col);
			}

			/// access an element of the matrix
			inline T & operator()(UInt row, UInt col) {
			AKANTU_DEBUG_ASSERT(rows_offsets(row + 1) - rows_offsets(row) > col,
			"This element is not present in this CSR");
			return rows(rows_offsets(row) + col);
			}

			inline void endInsertions() {
			for (UInt i = nb_rows; i > 0; --i)
			rows_offsets(i) = rows_offsets(i - 1);
			rows_offsets(0) = 0;
			}

			inline void countToCSR() {
			for (UInt i = 1; i < nb_rows; ++i)
			rows_offsets(i) += rows_offsets(i - 1);
			for (UInt i = nb_rows; i >= 1; --i)
			rows_offsets(i) = rows_offsets(i - 1);
			rows_offsets(0) = 0;
			}

			inline void clearRows() {
			rows_offsets.clear();
			rows.resize(0);
			};

			inline void resizeRows(UInt nb_rows) {
			this->nb_rows = nb_rows;
			rows_offsets.resize(nb_rows + 1);
			rows_offsets.clear();
			}

			inline void resizeCols() { rows.resize(rows_offsets(nb_rows)); }

			inline void copy(Array<UInt> & offsets, Array<T> & values) {
			offsets.copy(rows_offsets);
			values.copy(rows);
			}

			/* ------------------------------------------------------------------------ */
			/* Accessors */
			/* ------------------------------------------------------------------------ */
			public:
			/// returns the number of rows
			inline UInt getNbRows() const { return rows_offsets.size() - 1; };

			/// returns the number of non-empty columns in a given row
			inline UInt getNbCols(UInt row) const {
			return rows_offsets(row + 1) - rows_offsets(row);
			};

			/// returns the offset (start of columns) for a given row
			inline UInt & rowOffset(UInt row) { return rows_offsets(row); };

			// /// iterator on a row
			// template <class array_iterator>
			// class iterator_internal
			// : public std::iterator<std::bidirectional_iterator_tag, typename
			// array_iterator::value_type> {
			// public:
			// using _parent = std::iterator<std::bidirectional_iterator_tag, R>;
			// using pointer = typename _parent::pointer;
			// using reference = typename _parent::reference;

			// explicit iterator_internal(array_iterator ait) : pos(std::move(ait)){};
			// iterator_internal(const iterator_internal & it) : pos(it.pos){};

			// iterator_internal & operator++() {
			// ++pos;
			// return *this;
			// };
			// iterator_internal operator++(int) {
			// iterator tmp(*this);
			// operator++();
			// return tmp;
			// };

			// iterator_internal & operator--() {
			// --pos;
			// return *this;
			// };
			// iterator_internal operator--(int) {
			// iterator_internal tmp(*this);
			// operator--();
			// return tmp;
			// };

			// bool operator==(const iterator_internal & rhs) { return pos == rhs.pos;
			// }; bool operator!=(const iterator_internal & rhs) { return pos !=
			// rhs.pos; }; reference operator() { return pos; }; pointer operator->()
			// const { return pos; };

			// private:
			// array_iterator pos;
			// };

			using iterator = typename Array<T>::scalar_iterator;
			using const_iterator = typename Array<T>::const_scalar_iterator;

			template <typename iterator_internal> class CSRRow {
			public:
			CSRRow(iterator_internal begin, iterator_internal end)
			: begin_(std::move(begin)), end_(std::move(end)) {}

			inline auto begin() const { return begin_; }
			inline auto end() const { return end_; }

			private:
			iterator_internal begin_, end_;
			};

			inline iterator begin(UInt row) { return rows.begin() + rows_offsets(row); };
			inline iterator end(UInt row) {
			return rows.begin() + rows_offsets(row + 1);
			};

			inline const_iterator begin(UInt row) const {
			return rows.begin() + rows_offsets(row);
			};
			inline const_iterator end(UInt row) const {
			return rows.begin() + rows_offsets(row + 1);
			};

			private:
			template <typename iterator_internal>
			decltype(auto) make_row(iterator_internal begin, iterator_internal end) {
			return CSRRow<iterator_internal>(std::move(begin), std::move(end));
			}

			public:
			inline decltype(auto) getRow(UInt row) { return make_row(begin(row), end(row)); }
			inline decltype(auto) getRow(UInt row) const {
			return make_row(begin(row), end(row));
			}

			inline iterator rbegin(UInt row) {
			return rows.begin() + rows_offsets(row + 1) - 1;
			};
			inline iterator rend(UInt row) {
			return rows.begin() + rows_offsets(row) - 1;
			};

			inline const Array<UInt> & getRowsOffset() const { return rows_offsets; };
			inline const Array<T> & getRows() const { return rows; };
			inline Array<T> & getRows() { return rows; };
			/* ------------------------------------------------------------------------ */
			/* Class Members */
			/* ------------------------------------------------------------------------ */
			protected:
			UInt nb_rows;

			/// array of size nb_rows containing the offset where the values are stored in
			Array<UInt> rows_offsets;

			/// compressed row values, values of row[i] are stored between rows_offsets[i]
			/// and rows_offsets[i+1]
			Array<T> rows;
			};

			/* -------------------------------------------------------------------------- */
			/* Data CSR */
			/* -------------------------------------------------------------------------- */

			/**
			* Inherits from CSR<UInt> and can contain information such as matrix values
			* where the mother class would be a CSR structure for row and cols
			*
			* @return nb_rows
			*/
			template <class T> class DataCSR : public CSR<UInt> {
			public:
			DataCSR(UInt nb_rows = 0) : CSR<UInt>(nb_rows), data(0, 1){};

			inline void resizeCols() {
			CSR<UInt>::resizeCols();
			data.resize(rows_offsets(nb_rows));
			}

			inline const Array<T> & getData() const { return data; };

			private:
			Array<T> data;
			};

			/* -------------------------------------------------------------------------- */
			/* inline functions */
			/* -------------------------------------------------------------------------- */

			//#include "aka_csr_inline_impl.cc"

			/// standard output stream operator
			// inline std::ostream & operator <<(std::ostream & stream, const CSR & _this)
			// {
			// _this.printself(stream);
			// return stream;
			// }

			} // namespace akantu

			#endif /* __AKANTU_AKA_CSR_HH__ */

rAKA/src/common/aka_csr.hhc3496bf61b8dbugfixes/39-the-python…

aka_csr.hhView Options

rAKA/src/common/aka_csr.hh
c3496bf61b8dbugfixes/39-the-python…

aka_csr.hh
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