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mesh_segment_intersector_tmpl.hh
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			/**
			* @file mesh_segment_intersector_tmpl.hh
			*
			* @author Lucas Frerot <lucas.frerot@epfl.ch>
			* @author Clement Roux <clement.roux@epfl.ch>
			* @author Marco Vocialta <marco.vocialta@epfl.ch>
			*
			* @date creation: Wed Apr 29 2015
			* @date last modification: Tue Feb 20 2018
			*
			* @brief Computation of mesh intersection with segments
			*
			* @section LICENSE
			*
			* Copyright (©) 2015-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
			* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
			*
			* Akantu is free software: you can redistribute it and/or modify it under the
			* terms of the GNU Lesser General Public License as published by the Free
			* Software Foundation, either version 3 of the License, or (at your option) any
			* later version.
			*
			* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
			* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
			* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
			* details.
			*
			* You should have received a copy of the GNU Lesser General Public License
			* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
			*
			*/

			/* -------------------------------------------------------------------------- */

			#ifndef __AKANTU_MESH_SEGMENT_INTERSECTOR_TMPL_HH__
			#define __AKANTU_MESH_SEGMENT_INTERSECTOR_TMPL_HH__

			#include "aka_common.hh"
			#include "mesh_geom_common.hh"
			#include "tree_type_helper.hh"

			namespace akantu {

			template <UInt dim, ElementType type>
			MeshSegmentIntersector<dim, type>::MeshSegmentIntersector(Mesh & mesh,
			Mesh & result_mesh)
			: parent_type(mesh), result_mesh(result_mesh), current_physical_name() {
			this->intersection_points = new Array<Real>(0, dim);
			this->constructData();
			}

			template <UInt dim, ElementType type>
			MeshSegmentIntersector<dim, type>::~MeshSegmentIntersector() {}

			template <UInt dim, ElementType type>
			void MeshSegmentIntersector<dim, type>::computeIntersectionQuery(
			const K::Segment_3 & query) {
			AKANTU_DEBUG_IN();

			result_mesh.addConnectivityType(_segment_2, _not_ghost);
			result_mesh.addConnectivityType(_segment_2, _ghost);

			std::list<result_type> result_list;
			std::set<std::pair<K::Segment_3, UInt>, segmentPairsLess> segment_set;

			this->factory.getTree().all_intersections(query,
			std::back_inserter(result_list));
			this->computeSegments(result_list, segment_set, query);

			// Arrays for storing nodes and connectivity
			Array<Real> & nodes = result_mesh.getNodes();
			Array<UInt> & connectivity = result_mesh.getConnectivity(_segment_2);

			// Arrays for storing associated element and physical name
			bool valid_elemental_data = true;
			Array<Element> * associated_element = NULL;
			Array<std::string> * associated_physical_name = NULL;

			try {
			associated_element =
			&result_mesh.getData<Element>("associated_element", _segment_2);
			associated_physical_name =
			&result_mesh.getData<std::string>("physical_names", _segment_2);
			} catch (debug::Exception & e) {
			valid_elemental_data = false;
			}

			std::set<pair_type, segmentPairsLess>::iterator it = segment_set.begin(),
			end = segment_set.end();

			// Loop over the segment pairs
			for (; it != end; ++it) {
			if (!it->first.is_degenerate()) {
			Vector<UInt> segment_connectivity(2);
			segment_connectivity(0) = result_mesh.getNbNodes();
			segment_connectivity(1) = result_mesh.getNbNodes() + 1;
			connectivity.push_back(segment_connectivity);

			// Copy nodes
			Vector<Real> source(dim), target(dim);
			for (UInt j = 0; j < dim; j++) {
			source(j) = it->first.source()[j];
			target(j) = it->first.target()[j];
			}

			nodes.push_back(source);
			nodes.push_back(target);

			// Copy associated element info
			if (valid_elemental_data) {
			associated_element->push_back(Element{type, it->second, _not_ghost});
			associated_physical_name->push_back(current_physical_name);
			}
			}
			}

			AKANTU_DEBUG_OUT();
			}

			template <UInt dim, ElementType type>
			void MeshSegmentIntersector<dim, type>::computeMeshQueryIntersectionPoint(
			const K::Segment_3 & /query/, UInt /nb_old_nodes/) {
			AKANTU_ERROR("The method: computeMeshQueryIntersectionPoint has not "
			"been implemented in class MeshSegmentIntersector!");
			}

			template <UInt dim, ElementType type>
			void MeshSegmentIntersector<dim, type>::buildResultFromQueryList(
			const std::list<K::Segment_3> & query_list) {
			AKANTU_DEBUG_IN();

			this->computeIntersectionQueryList(query_list);

			AKANTU_DEBUG_OUT();
			}

			template <UInt dim, ElementType type>
			void MeshSegmentIntersector<dim, type>::computeSegments(
			const std::list<result_type> & intersections,
			std::set<pair_type, segmentPairsLess> & segments,
			const K::Segment_3 & query) {
			AKANTU_DEBUG_IN();

			/*
			* Number of intersections = 0 means
			*
			* - query is completely outside mesh
			* - query is completely inside primitive
			*
			* We try to determine the case and still construct the segment list
			*/
			if (intersections.size() == 0) {
			// We look at all the primitives intersected by two rays
			// If there is one primitive in common, then query is inside
			// that primitive
			K::Ray_3 ray1(query.source(), query.target());
			K::Ray_3 ray2(query.target(), query.source());

			std::set<UInt> ray1_results, ray2_results;

			this->factory.getTree().all_intersected_primitives(
			ray1, std::inserter(ray1_results, ray1_results.begin()));
			this->factory.getTree().all_intersected_primitives(
			ray2, std::inserter(ray2_results, ray2_results.begin()));

			bool inside_primitive = false;
			UInt primitive_id = 0;

			std::set<UInt>::iterator ray2_it = ray2_results.begin(),
			ray2_end = ray2_results.end();

			// Test if first list contains an element of second list
			for (; ray2_it != ray2_end && !inside_primitive; ++ray2_it) {
			if (ray1_results.find(*ray2_it) != ray1_results.end()) {
			inside_primitive = true;
			primitive_id = *ray2_it;
			}
			}

			if (inside_primitive) {
			segments.insert(std::make_pair(query, primitive_id));
			}
			}

			else {
			typename std::list<result_type>::const_iterator it = intersections.begin(),
			end = intersections.end();

			for (; it != end; ++it) {
			UInt el = (*it)->second;

			// Result of intersection is a segment
			if (const K::Segment_3 * segment =
			boost::get<K::Segment_3>(&((*it)->first))) {
			// Check if the segment was alread created
			segments.insert(std::make_pair(*segment, el));
			}

			// Result of intersection is a point
			else if (const K::Point_3 * point =
			boost::get<K::Point_3>(&((*it)->first))) {
			// We only want to treat points differently if we're in 3D with Tetra4
			// elements This should be optimized by compilator
			if (dim == 3 && type == _tetrahedron_4) {
			UInt nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
			TreeTypeHelper<Triangle<K>, K>::container_type facets;

			const Array<Real> & nodes = this->mesh.getNodes();
			Array<UInt>::const_vector_iterator connectivity_vec =
			this->mesh.getConnectivity(type).begin(nb_nodes_per_element);

			const Vector<UInt> & el_connectivity = connectivity_vec[el];

			Matrix<Real> node_coordinates(dim, nb_nodes_per_element);
			for (UInt i = 0; i < nb_nodes_per_element; i++)
			for (UInt j = 0; j < dim; j++)
			node_coordinates(j, i) = nodes(el_connectivity(i), j);

			this->factory.addPrimitive(node_coordinates, el, facets);

			// Local tree
			TreeTypeHelper<Triangle<K>, K>::tree * local_tree =
			new TreeTypeHelper<Triangle<K>, K>::tree(facets.begin(),
			facets.end());

			// Compute local intersections (with current element)
			std::list<result_type> local_intersections;
			local_tree->all_intersections(
			query, std::back_inserter(local_intersections));

			bool out_point_found = false;
			typename std::list<result_type>::const_iterator
			local_it = local_intersections.begin(),
			local_end = local_intersections.end();

			for (; local_it != local_end; ++local_it) {
			if (const K::Point_3 * local_point =
			boost::get<K::Point_3>(&((*local_it)->first))) {
			if (!comparePoints(point, local_point)) {
			K::Segment_3 seg(point, local_point);
			segments.insert(std::make_pair(seg, el));
			out_point_found = true;
			}
			}
			}

			if (!out_point_found) {
			TreeTypeHelper<Triangle<K>, K>::point_type a(
			node_coordinates(0, 0), node_coordinates(1, 0),
			node_coordinates(2, 0)),
			b(node_coordinates(0, 1), node_coordinates(1, 1),
			node_coordinates(2, 1)),
			c(node_coordinates(0, 2), node_coordinates(1, 2),
			node_coordinates(2, 2)),
			d(node_coordinates(0, 3), node_coordinates(1, 3),
			node_coordinates(2, 3));
			K::Tetrahedron_3 tetra(a, b, c, d);
			const K::Point_3 * inside_point = NULL;
			if (tetra.has_on_bounded_side(query.source()) &&
			!tetra.has_on_boundary(query.source()))
			inside_point = &query.source();
			else if (tetra.has_on_bounded_side(query.target()) &&
			!tetra.has_on_boundary(query.target()))
			inside_point = &query.target();

			if (inside_point) {
			K::Segment_3 seg(inside_point, point);
			segments.insert(std::make_pair(seg, el));
			}
			}

			delete local_tree;
			}
			}
			}
			}

			AKANTU_DEBUG_OUT();
			}

			} // namespace akantu

			#endif // __AKANTU_MESH_SEGMENT_INTERSECTOR_TMPL_HH__

rAKA/src/geometry/mesh_segment_intersector_tmpl.hh9af5e8823b34bugfixes/39-the-python…

mesh_segment_intersector_tmpl.hhView Options

rAKA/src/geometry/mesh_segment_intersector_tmpl.hh
9af5e8823b34bugfixes/39-the-python…

mesh_segment_intersector_tmpl.hh
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