Homec4science
Diffusion akantu (bugfixes/41-group-not-properly-updated-when-cohesive-elements-are-inserted) Browse

rAKA/python/py_mesh.cc
b963975cba79bugfixes/41-group-not…

Last Change
Raw File

py_mesh.cc
View Options

/* -------------------------------------------------------------------------- */
#include "aka_config.hh"
/* -------------------------------------------------------------------------- */
#include "py_aka_array.hh"
/* -------------------------------------------------------------------------- */
#include <mesh.hh>
#include <mesh_accessor.hh>
#include <mesh_utils.hh>
/* -------------------------------------------------------------------------- */
#include <pybind11/pybind11.h>
#include <pybind11/stl.h>
/* -------------------------------------------------------------------------- */
namespace py = pybind11;
/* -------------------------------------------------------------------------- */
namespace akantu {
/* -------------------------------------------------------------------------- */
template <typename T>
void register_element_type_map_array(py::module & mod,
const std::string & name) {
py::class_<ElementTypeMapArray<T>, std::shared_ptr<ElementTypeMapArray<T>>>(
mod, ("ElementTypeMapArray" + name).c_str())
.def(
"__call__",
[](ElementTypeMapArray<T> & self, ElementType type,
GhostType ghost_type) -> decltype(auto) {
return self(type, ghost_type);
},
py::arg("type"), py::arg("ghost_type") = _not_ghost,
py::return_value_policy::reference)
.def(
"elementTypes",
[](ElementTypeMapArray<T> & self, UInt _dim, GhostType _ghost_type,
ElementKind _kind) -> std::vector<ElementType> {
auto types = self.elementTypes(_dim, _ghost_type, _kind);
std::vector<ElementType> _types;
for (auto && t : types) {
_types.push_back(t);
}
return _types;
},
py::arg("dim") = _all_dimensions, py::arg("ghost_type") = _not_ghost,
py::arg("kind") = _ek_regular);
}
/* -------------------------------------------------------------------------- */
void register_mesh(py::module & mod) {
register_element_type_map_array<Real>(mod, "Real");
register_element_type_map_array<UInt>(mod, "UInt");
py::class_<MeshData>(mod, "MeshData")
.def(
"getElementalDataUInt",
[](MeshData & _this, const ID & name) -> decltype(auto) {
return _this.getElementalData<UInt>(name);
},
py::return_value_policy::reference)
.def(
"getElementalDataReal",
[](MeshData & _this, const ID & name) -> decltype(auto) {
return _this.getElementalData<Real>(name);
},
py::return_value_policy::reference);
py::class_<Mesh, GroupManager, Dumpable, MeshData>(mod, "Mesh",
py::multiple_inheritance())
.def(py::init<UInt, const ID &>(),
py::arg("spatial_dimension"), py::arg("id") = "mesh")
.def("read", &Mesh::read, py::arg("filename"),
py::arg("mesh_io_type") = _miot_auto, "read the mesh from a file")
.def(
"getNodes",
[](Mesh & self) -> decltype(auto) { return self.getNodes(); },
py::return_value_policy::reference)
.def("getNbNodes", &Mesh::getNbNodes)
.def(
"getConnectivity",
[](Mesh & self, ElementType type) -> decltype(auto) {
return self.getConnectivity(type);
},
py::return_value_policy::reference)
.def(
"addConnectivityType",
[](Mesh & self, ElementType type, GhostType ghost_type) -> void {
self.addConnectivityType(type, ghost_type);
},
py::arg("type"), py::arg("ghost_type") = _not_ghost)
.def("distribute", [](Mesh & self) { self.distribute(); })
.def("fillNodesToElements", &Mesh::fillNodesToElements,
py::arg("dimension") = _all_dimensions)
.def("getAssociatedElements", [](Mesh & self, const UInt & node, py::list l) {
Array<Element> elements;
self.getAssociatedElements(node, elements);
for (auto && element : elements) {
l.append(element);
}
})
.def("makePeriodic",
[](Mesh & self, const SpatialDirection & direction) {
self.makePeriodic(direction);
})
.def(
"getNbElement",
[](Mesh & self, const UInt spatial_dimension, GhostType ghost_type,
ElementKind kind) {
return self.getNbElement(spatial_dimension, ghost_type, kind);
},
py::arg("spatial_dimension") = _all_dimensions,
py::arg("ghost_type") = _not_ghost, py::arg("kind") = _ek_not_defined)
.def(
"getNbElement",
[](Mesh & self, ElementType type, GhostType ghost_type) {
return self.getNbElement(type, ghost_type);
},
py::arg("type"), py::arg("ghost_type") = _not_ghost)
.def_static(
"getSpatialDimension",
[](ElementType & type) { return Mesh::getSpatialDimension(type); })
.def(
"getDataReal",
[](Mesh & _this, const ID & name, ElementType type,
GhostType ghost_type) -> decltype(auto) {
return _this.getData<Real>(name, type, ghost_type);
},
py::arg("name"), py::arg("type"), py::arg("ghost_type") = _not_ghost,
py::return_value_policy::reference)
.def(
"hasDataReal",
[](Mesh & _this, const ID & name, ElementType type,
GhostType ghost_type) -> bool {
return _this.hasData<Real>(name, type, ghost_type);
},
py::arg("name"), py::arg("type"), py::arg("ghost_type") = _not_ghost);
/* ------------------------------------------------------------------------ */
py::class_<MeshUtils>(mod, "MeshUtils")
.def_static("buildFacets", &MeshUtils::buildFacets);
py::class_<MeshAccessor>(mod, "MeshAccessor")
.def(py::init<Mesh &>(), py::arg("mesh"))
.def(
"resizeConnectivity",
[](MeshAccessor & self, UInt new_size, ElementType type, GhostType gt)
-> void { self.resizeConnectivity(new_size, type, gt); },
py::arg("new_size"), py::arg("type"),
py::arg("ghost_type") = _not_ghost)
.def(
"resizeNodes",
[](MeshAccessor & self, UInt new_size) -> void {
self.resizeNodes(new_size);
},
py::arg("new_size"))
.def("makeReady", &MeshAccessor::makeReady);
}
} // namespace akantu
c4science · Help