Homec4science
Diffusion akantu (bugfixes/41-group-not-properly-updated-when-cohesive-elements-are-inserted) Browse

rAKA/src/synchronizer/master_element_info_per_processor.cc
cafceb59140ebugfixes/41-group-not…

Last Change
Raw File

master_element_info_per_processor.cc
View Options

/**
* @file master_element_info_per_processor.cc
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date Fri Mar 11 14:57:13 2016
*
* @brief
*
* @section LICENSE
*
* Copyright (©) 2010-2011 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "element_info_per_processor.hh"
#include "element_synchronizer.hh"
#include "static_communicator.hh"
#include "element_group.hh"
#include "mesh_utils.hh"
/* -------------------------------------------------------------------------- */
#include <map>
#include <iostream>
#include <algorithm>
/* -------------------------------------------------------------------------- */
__BEGIN_AKANTU__
/* -------------------------------------------------------------------------- */
MasterElementInfoPerProc::MasterElementInfoPerProc(
ElementSynchronizer & synchronizer, UInt message_cnt, UInt root, ElementType type,
const MeshPartition & partition)
: ElementInfoPerProc(synchronizer, message_cnt, root, type),
partition(partition), all_nb_local_element(nb_proc, 0),
all_nb_ghost_element(nb_proc, 0), all_nb_element_to_send(nb_proc, 0) {
Vector<UInt> size(5);
size(0) = (UInt)type;
if (type != _not_defined) {
nb_nodes_per_element = Mesh::getNbNodesPerElement(type);
nb_element = mesh.getNbElement(type);
const Array<UInt> & partition_num =
this->partition.getPartition(this->type, _not_ghost);
const CSR<UInt> & ghost_partition =
this->partition.getGhostPartitionCSR()(this->type, _not_ghost);
for (UInt el = 0; el < nb_element; ++el) {
this->all_nb_local_element[partition_num(el)]++;
for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
part != ghost_partition.end(el); ++part) {
this->all_nb_ghost_element[*part]++;
}
this->all_nb_element_to_send[partition_num(el)] +=
ghost_partition.getNbCols(el) + 1;
}
/// tag info
std::vector<std::string> tag_names;
this->getMeshData().getTagNames(tag_names, type);
this->nb_tags = tag_names.size();
size(4) = nb_tags;
for (UInt p = 0; p < nb_proc; ++p) {
if (p != root) {
size(1) = this->all_nb_local_element[p];
size(2) = this->all_nb_ghost_element[p];
size(3) = this->all_nb_element_to_send[p];
AKANTU_DEBUG_INFO("Sending connectivities informations to proc "
<< p << " TAG("
<< Tag::genTag(this->rank, this->message_count,
Tag::_SIZES) << ")");
comm.send(size, p,
Tag::genTag(this->rank, this->message_count, Tag::_SIZES));
} else {
this->nb_local_element = this->all_nb_local_element[p];
this->nb_ghost_element = this->all_nb_ghost_element[p];
}
}
} else {
for (UInt p = 0; p < this->nb_proc; ++p) {
if (p != this->root) {
AKANTU_DEBUG_INFO("Sending empty connectivities informations to proc "
<< p << " TAG("
<< Tag::genTag(this->rank, this->message_count,
Tag::_SIZES) << ")");
comm.send(size, p,
Tag::genTag(this->rank, this->message_count, Tag::_SIZES));
}
}
}
}
/* ------------------------------------------------------------------------ */
void MasterElementInfoPerProc::synchronizeConnectivities() {
const Array<UInt> & partition_num =
this->partition.getPartition(this->type, _not_ghost);
const CSR<UInt> & ghost_partition =
this->partition.getGhostPartitionCSR()(this->type, _not_ghost);
std::vector<Array<UInt> > buffers(this->nb_proc);
/// copying the local connectivity
Array<UInt>::const_vector_iterator conn_it =
this->mesh.getConnectivity(this->type, _not_ghost)
.begin(this->nb_nodes_per_element);
Array<UInt>::const_vector_iterator conn_end =
this->mesh.getConnectivity(this->type, _not_ghost)
.end(this->nb_nodes_per_element);
for (UInt el = 0; conn_it != conn_end; ++conn_it, ++el) {
buffers[partition_num(el)].push_back(*conn_it);
}
/// copying the connectivity of ghost element
conn_it = this->mesh.getConnectivity(this->type, _not_ghost)
.begin(this->nb_nodes_per_element);
for (UInt el = 0; conn_it != conn_end; ++el, ++conn_it) {
for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
part != ghost_partition.end(el); ++part) {
UInt proc = *part;
buffers[proc].push_back(*conn_it);
}
}
#ifndef AKANTU_NDEBUG
for (UInt p = 0; p < this->nb_proc; ++p) {
UInt size = this->nb_nodes_per_element *
(this->all_nb_local_element[p] + this->all_nb_ghost_element[p]);
AKANTU_DEBUG_ASSERT(
buffers[p].getSize() == size,
"The connectivity data packed in the buffer are not correct");
}
#endif
/// send all connectivity and ghost information to all processors
std::vector<CommunicationRequest> requests;
for (UInt p = 0; p < this->nb_proc; ++p) {
if (p != this->root) {
AKANTU_DEBUG_INFO("Sending connectivities to proc "
<< p << " TAG("
<< Tag::genTag(this->rank, this->message_count,
Tag::_CONNECTIVITY) << ")");
requests.push_back(comm.asyncSend(
buffers[p], p,
Tag::genTag(this->rank, this->message_count, Tag::_CONNECTIVITY)));
}
}
Array<UInt> & old_nodes = this->getNodesGlobalIds();
/// create the renumbered connectivity
AKANTU_DEBUG_INFO("Renumbering local connectivities");
MeshUtils::renumberMeshNodes(mesh, buffers[root], all_nb_local_element[root],
all_nb_ghost_element[root], type, old_nodes);
comm.waitAll(requests);
comm.freeCommunicationRequest(requests);
}
/* ------------------------------------------------------------------------ */
void MasterElementInfoPerProc::synchronizePartitions() {
const Array<UInt> & partition_num =
this->partition.getPartition(this->type, _not_ghost);
const CSR<UInt> & ghost_partition =
this->partition.getGhostPartitionCSR()(this->type, _not_ghost);
std::vector<Array<UInt> > buffers;
/// splitting the partition information to send them to processors
Vector<UInt> count_by_proc(nb_proc, 0);
for (UInt el = 0; el < nb_element; ++el) {
UInt proc = partition_num(el);
buffers[proc].push_back(ghost_partition.getNbCols(el));
UInt i(0);
for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
part != ghost_partition.end(el); ++part, ++i) {
buffers[proc].push_back(*part);
}
}
for (UInt el = 0; el < nb_element; ++el) {
UInt i(0);
for (CSR<UInt>::const_iterator part = ghost_partition.begin(el);
part != ghost_partition.end(el); ++part, ++i) {
buffers[*part].push_back(partition_num(el));
}
}
#ifndef AKANTU_NDEBUG
for (UInt p = 0; p < this->nb_proc; ++p) {
AKANTU_DEBUG_ASSERT(
buffers[p].getSize() ==
(this->all_nb_ghost_element[p] + this->all_nb_element_to_send[p]),
"Data stored in the buffer are most probably wrong");
}
#endif
std::vector<CommunicationRequest> requests;
/// last data to compute the communication scheme
for (UInt p = 0; p < this->nb_proc; ++p) {
if (p != this->root) {
AKANTU_DEBUG_INFO("Sending partition informations to proc "
<< p << " TAG("
<< Tag::genTag(this->rank, this->message_count,
Tag::_PARTITIONS) << ")");
requests.push_back(comm.asyncSend(
buffers[p], p,
Tag::genTag(this->rank, this->message_count, Tag::_PARTITIONS)));
}
}
if (Mesh::getSpatialDimension(this->type) ==
this->mesh.getSpatialDimension()) {
AKANTU_DEBUG_INFO("Creating communications scheme");
this->fillCommunicationScheme(buffers[this->rank]);
}
comm.waitAll(requests);
comm.freeCommunicationRequest(requests);
}
/* -------------------------------------------------------------------------- */
void MasterElementInfoPerProc::synchronizeTags() {
AKANTU_DEBUG_IN();
if (this->nb_tags == 0) {
AKANTU_DEBUG_OUT();
return;
}
UInt mesh_data_sizes_buffer_length;
MeshData & mesh_data = this->getMeshData();
/// tag info
std::vector<std::string> tag_names;
mesh_data.getTagNames(tag_names, type);
// Make sure the tags are sorted (or at least not in random order),
// because they come from a map !!
std::sort(tag_names.begin(), tag_names.end());
// Sending information about the tags in mesh_data: name, data type and
// number of components of the underlying array associated to the current
// type
DynamicCommunicationBuffer mesh_data_sizes_buffer;
std::vector<std::string>::const_iterator names_it = tag_names.begin();
std::vector<std::string>::const_iterator names_end = tag_names.end();
for (; names_it != names_end; ++names_it) {
mesh_data_sizes_buffer << *names_it;
mesh_data_sizes_buffer << mesh_data.getTypeCode(*names_it);
mesh_data_sizes_buffer << mesh_data.getNbComponent(*names_it, type);
}
mesh_data_sizes_buffer_length = mesh_data_sizes_buffer.getSize();
AKANTU_DEBUG_INFO(
"Broadcasting the size of the information about the mesh data tags: ("
<< mesh_data_sizes_buffer_length << ").");
comm.broadcast(mesh_data_sizes_buffer_length, root);
AKANTU_DEBUG_INFO(
"Broadcasting the information about the mesh data tags, addr "
<< (void *)mesh_data_sizes_buffer.storage());
if (mesh_data_sizes_buffer_length != 0)
comm.broadcast(mesh_data_sizes_buffer, root);
if (mesh_data_sizes_buffer_length != 0) {
// Sending the actual data to each processor
DynamicCommunicationBuffer * buffers =
new DynamicCommunicationBuffer[nb_proc];
std::vector<std::string>::const_iterator names_it = tag_names.begin();
std::vector<std::string>::const_iterator names_end = tag_names.end();
// Loop over each tag for the current type
for (; names_it != names_end; ++names_it) {
// Type code of the current tag (i.e. the tag named *names_it)
this->fillTagBuffer(buffers, *names_it);
}
std::vector<CommunicationRequest> requests;
for (UInt p = 0; p < nb_proc; ++p) {
if (p != root) {
AKANTU_DEBUG_INFO("Sending "
<< buffers[p].getSize()
<< " bytes of mesh data to proc " << p << " TAG("
<< Tag::genTag(this->rank, this->message_count,
Tag::_MESH_DATA) << ")");
requests.push_back(comm.asyncSend(
buffers[p], p,
Tag::genTag(this->rank, this->message_count, Tag::_MESH_DATA)));
}
}
names_it = tag_names.begin();
// Loop over each tag for the current type
for (; names_it != names_end; ++names_it) {
// Reinitializing the mesh data on the master
this->fillMeshData(buffers[root], *names_it);
}
comm.waitAll(requests);
comm.freeCommunicationRequest(requests);
requests.clear();
delete[] buffers;
}
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
template <typename T>
void MasterElementInfoPerProc::fillTagBufferTemplated(
DynamicCommunicationBuffer * buffers, const std::string & tag_name) {
MeshData & mesh_data = this->getMeshData();
const Array<T> & data = mesh_data.getElementalDataArray<T>(tag_name, type);
const Array<UInt> & partition_num =
this->partition.getPartition(this->type, _not_ghost);
const CSR<UInt> & ghost_partition =
this->partition.getGhostPartitionCSR()(this->type, _not_ghost);
// Not possible to use the iterator because it potentially triggers the
// creation of complex
// type templates (such as akantu::Vector< std::vector<Element> > which don't
// implement the right interface
// (e.g. operator<< in that case).
// typename Array<T>::template const_iterator< Vector<T> > data_it =
// data.begin(data.getNbComponent());
// typename Array<T>::template const_iterator< Vector<T> > data_end =
// data.end(data.getNbComponent());
const T * data_it = data.storage();
const T * data_end = data.storage() + data.getSize() * data.getNbComponent();
const UInt * part = partition_num.storage();
/// copying the data, element by element
for (; data_it != data_end; ++part) {
for (UInt j(0); j < data.getNbComponent(); ++j, ++data_it) {
buffers[*part] << *data_it;
}
}
data_it = data.storage();
/// copying the data for the ghost element
for (UInt el(0); data_it != data_end;
data_it += data.getNbComponent(), ++el) {
CSR<UInt>::const_iterator it = ghost_partition.begin(el);
CSR<UInt>::const_iterator end = ghost_partition.end(el);
for (; it != end; ++it) {
UInt proc = *it;
for (UInt j(0); j < data.getNbComponent(); ++j) {
buffers[proc] << data_it[j];
}
}
}
}
/* -------------------------------------------------------------------------- */
void MasterElementInfoPerProc::fillTagBuffer(
DynamicCommunicationBuffer * buffers, const std::string & tag_name) {
MeshData & mesh_data = this->getMeshData();
#define AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA(r, extra_param, elem) \
case BOOST_PP_TUPLE_ELEM(2, 0, elem): { \
this->fillTagBufferTemplated<BOOST_PP_TUPLE_ELEM(2, 1, elem)>(buffers, \
tag_name); \
break; \
}
MeshDataTypeCode data_type_code = mesh_data.getTypeCode(tag_name);
switch (data_type_code) {
BOOST_PP_SEQ_FOR_EACH(AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA, ,
AKANTU_MESH_DATA_TYPES)
default:
AKANTU_DEBUG_ERROR("Could not obtain the type of tag" << tag_name << "!");
break;
}
#undef AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
}
/* -------------------------------------------------------------------------- */
void MasterElementInfoPerProc::synchronizeGroups() {
AKANTU_DEBUG_IN();
DynamicCommunicationBuffer * buffers =
new DynamicCommunicationBuffer[nb_proc];
typedef std::vector<std::vector<std::string> > ElementToGroup;
ElementToGroup element_to_group;
element_to_group.resize(nb_element);
GroupManager::const_element_group_iterator egi = mesh.element_group_begin();
GroupManager::const_element_group_iterator ege = mesh.element_group_end();
for (; egi != ege; ++egi) {
ElementGroup & eg = *(egi->second);
std::string name = egi->first;
ElementGroup::const_element_iterator eit =
eg.element_begin(type, _not_ghost);
ElementGroup::const_element_iterator eend =
eg.element_end(type, _not_ghost);
for (; eit != eend; ++eit) {
element_to_group[*eit].push_back(name);
}
eit = eg.element_begin(type, _not_ghost);
if (eit != eend)
const_cast<Array<UInt> &>(eg.getElements(type)).empty();
}
const Array<UInt> & partition_num =
this->partition.getPartition(this->type, _not_ghost);
const CSR<UInt> & ghost_partition =
this->partition.getGhostPartitionCSR()(this->type, _not_ghost);
/// preparing the buffers
const UInt * part = partition_num.storage();
/// copying the data, element by element
ElementToGroup::const_iterator data_it = element_to_group.begin();
ElementToGroup::const_iterator data_end = element_to_group.end();
for (; data_it != data_end; ++part, ++data_it) {
buffers[*part] << *data_it;
}
data_it = element_to_group.begin();
/// copying the data for the ghost element
for (UInt el(0); data_it != data_end; ++data_it, ++el) {
CSR<UInt>::const_iterator it = ghost_partition.begin(el);
CSR<UInt>::const_iterator end = ghost_partition.end(el);
for (; it != end; ++it) {
UInt proc = *it;
buffers[proc] << *data_it;
}
}
std::vector<CommunicationRequest> requests;
for (UInt p = 0; p < this->nb_proc; ++p) {
if (p == this->rank)
continue;
AKANTU_DEBUG_INFO("Sending element groups to proc "
<< p << " TAG("
<< Tag::genTag(this->rank, p, Tag::_ELEMENT_GROUP)
<< ")");
requests.push_back(comm.asyncSend(
buffers[p], p, Tag::genTag(this->rank, p, Tag::_ELEMENT_GROUP)));
}
this->fillElementGroupsFromBuffer(buffers[this->rank]);
comm.waitAll(requests);
comm.freeCommunicationRequest(requests);
requests.clear();
delete[] buffers;
AKANTU_DEBUG_OUT();
}
/* -------------------------------------------------------------------------- */
__END_AKANTU__
c4science · Help