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rAKA akantu
node_info_per_processor.cc
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/**
* @file node_info_per_processor.cc
*
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Wed Mar 16 2016
* @date last modification: Wed Nov 08 2017
*
* @brief Please type the brief for file: Helper classes to create the
* distributed synchronizer and distribute a mesh
*
* @section LICENSE
*
* Copyright (©) 2016-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "node_info_per_processor.hh"
#include "communicator.hh"
#include "node_group.hh"
#include "node_synchronizer.hh"
/* -------------------------------------------------------------------------- */
#include <algorithm>
/* -------------------------------------------------------------------------- */
namespace
akantu
{
/* -------------------------------------------------------------------------- */
NodeInfoPerProc
::
NodeInfoPerProc
(
NodeSynchronizer
&
synchronizer
,
UInt
message_cnt
,
UInt
root
)
:
MeshAccessor
(
synchronizer
.
getMesh
()),
synchronizer
(
synchronizer
),
comm
(
synchronizer
.
getCommunicator
()),
rank
(
comm
.
whoAmI
()),
nb_proc
(
comm
.
getNbProc
()),
root
(
root
),
mesh
(
synchronizer
.
getMesh
()),
spatial_dimension
(
synchronizer
.
getMesh
().
getSpatialDimension
()),
message_count
(
message_cnt
)
{}
/* -------------------------------------------------------------------------- */
void
NodeInfoPerProc
::
synchronize
()
{
synchronizeNodes
();
synchronizeTypes
();
synchronizeGroups
();
synchronizePeriodicity
();
synchronizeTags
();
}
/* -------------------------------------------------------------------------- */
template
<
class
CommunicationBuffer
>
void
NodeInfoPerProc
::
fillNodeGroupsFromBuffer
(
CommunicationBuffer
&
buffer
)
{
AKANTU_DEBUG_IN
();
std
::
vector
<
std
::
vector
<
std
::
string
>>
node_to_group
;
buffer
>>
node_to_group
;
AKANTU_DEBUG_ASSERT
(
node_to_group
.
size
()
==
mesh
.
getNbGlobalNodes
(),
"Not the good amount of nodes where transmitted"
);
const
auto
&
global_nodes
=
mesh
.
getGlobalNodesIds
();
for
(
auto
&&
data
:
enumerate
(
global_nodes
))
{
for
(
const
auto
&
node
:
node_to_group
[
std
::
get
<
1
>
(
data
)])
{
mesh
.
getNodeGroup
(
node
).
add
(
std
::
get
<
0
>
(
data
),
false
);
}
}
for
(
auto
&&
ng_data
:
mesh
.
iterateNodeGroups
())
{
ng_data
.
optimize
();
}
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
NodeInfoPerProc
::
fillNodesType
()
{
AKANTU_DEBUG_IN
();
UInt
nb_nodes
=
mesh
.
getNbNodes
();
auto
&
nodes_flags
=
this
->
getNodesFlags
();
Array
<
UInt
>
nodes_set
(
nb_nodes
);
nodes_set
.
set
(
0
);
enum
NodeSet
{
NORMAL_SET
=
1
,
GHOST_SET
=
2
,
};
Array
<
bool
>
already_seen
(
nb_nodes
,
1
,
false
);
for
(
auto
gt
:
ghost_types
)
{
UInt
set
=
NORMAL_SET
;
if
(
gt
==
_ghost
)
set
=
GHOST_SET
;
already_seen
.
set
(
false
);
for
(
auto
&&
type
:
mesh
.
elementTypes
(
_all_dimensions
,
gt
,
_ek_not_defined
))
{
const
auto
&
connectivity
=
mesh
.
getConnectivity
(
type
,
gt
);
for
(
auto
&
conn
:
make_view
(
connectivity
,
connectivity
.
getNbComponent
()))
{
for
(
UInt
n
=
0
;
n
<
conn
.
size
();
++
n
)
{
AKANTU_DEBUG_ASSERT
(
conn
(
n
)
<
nb_nodes
,
"Node "
<<
conn
(
n
)
<<
" bigger than number of nodes "
<<
nb_nodes
);
if
(
!
already_seen
(
conn
(
n
)))
{
nodes_set
(
conn
(
n
))
+=
set
;
already_seen
(
conn
(
n
))
=
true
;
}
}
}
}
}
nodes_flags
.
resize
(
nb_nodes
);
for
(
UInt
i
=
0
;
i
<
nb_nodes
;
++
i
)
{
if
(
nodes_set
(
i
)
==
NORMAL_SET
)
nodes_flags
(
i
)
=
NodeFlag
::
_normal
;
else
if
(
nodes_set
(
i
)
==
GHOST_SET
)
nodes_flags
(
i
)
=
NodeFlag
::
_pure_ghost
;
else
if
(
nodes_set
(
i
)
==
(
GHOST_SET
+
NORMAL_SET
))
nodes_flags
(
i
)
=
NodeFlag
::
_master
;
else
{
AKANTU_EXCEPTION
(
"Gni ?"
);
}
}
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
NodeInfoPerProc
::
fillCommunicationScheme
(
const
Array
<
UInt
>
&
master_info
)
{
AKANTU_DEBUG_IN
();
Communications
<
UInt
>
&
communications
=
this
->
synchronizer
.
getCommunications
();
{
// send schemes
auto
it
=
master_info
.
begin_reinterpret
(
2
,
master_info
.
size
()
/
2
);
auto
end
=
master_info
.
end_reinterpret
(
2
,
master_info
.
size
()
/
2
);
std
::
map
<
UInt
,
Array
<
UInt
>>
send_array_per_proc
;
for
(;
it
!=
end
;
++
it
)
{
const
Vector
<
UInt
>
&
send_info
=
*
it
;
send_array_per_proc
[
send_info
(
0
)].
push_back
(
send_info
(
1
));
}
for
(
auto
&
send_schemes
:
send_array_per_proc
)
{
auto
&
scheme
=
communications
.
createSendScheme
(
send_schemes
.
first
);
auto
&
sends
=
send_schemes
.
second
;
std
::
sort
(
sends
.
begin
(),
sends
.
end
());
std
::
transform
(
sends
.
begin
(),
sends
.
end
(),
sends
.
begin
(),
[
this
](
UInt
g
)
->
UInt
{
return
mesh
.
getNodeLocalId
(
g
);
});
scheme
.
copy
(
sends
);
}
}
{
// receive schemes
std
::
map
<
UInt
,
Array
<
UInt
>>
recv_array_per_proc
;
for
(
auto
node
:
arange
(
mesh
.
getNbNodes
()))
{
if
(
mesh
.
isSlaveNode
(
node
))
{
recv_array_per_proc
[
mesh
.
getNodePrank
(
node
)].
push_back
(
mesh
.
getNodeGlobalId
(
node
));
}
}
for
(
auto
&
recv_schemes
:
recv_array_per_proc
)
{
auto
&
scheme
=
communications
.
createRecvScheme
(
recv_schemes
.
first
);
auto
&
recvs
=
recv_schemes
.
second
;
std
::
sort
(
recvs
.
begin
(),
recvs
.
end
());
std
::
transform
(
recvs
.
begin
(),
recvs
.
end
(),
recvs
.
begin
(),
[
this
](
UInt
g
)
->
UInt
{
return
mesh
.
getNodeLocalId
(
g
);
});
scheme
.
copy
(
recvs
);
}
}
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
NodeInfoPerProc
::
fillPeriodicPairs
(
const
Array
<
UInt
>
&
global_pairs
,
std
::
vector
<
UInt
>
&
missing_nodes
)
{
this
->
wipePeriodicInfo
();
auto
&
nodes_flags
=
this
->
getNodesFlags
();
auto
checkIsLocal
=
[
&
](
auto
&&
global_node
)
{
auto
&&
node
=
mesh
.
getNodeLocalId
(
global_node
);
if
(
node
==
UInt
(
-
1
))
{
auto
&
global_nodes
=
this
->
getNodesGlobalIds
();
node
=
global_nodes
.
size
();
global_nodes
.
push_back
(
global_node
);
nodes_flags
.
push_back
(
NodeFlag
::
_pure_ghost
);
missing_nodes
.
push_back
(
global_node
);
std
::
cout
<<
"Missing node "
<<
node
<<
std
::
endl
;
}
return
node
;
};
for
(
auto
&&
pairs
:
make_view
(
global_pairs
,
2
))
{
UInt
slave
=
checkIsLocal
(
pairs
(
0
));
UInt
master
=
checkIsLocal
(
pairs
(
1
));
this
->
addPeriodicSlave
(
slave
,
master
);
}
this
->
markMeshPeriodic
();
}
/* -------------------------------------------------------------------------- */
void
NodeInfoPerProc
::
receiveMissingPeriodic
(
DynamicCommunicationBuffer
&
buffer
)
{
auto
&
nodes
=
this
->
getNodes
();
Communications
<
UInt
>
&
communications
=
this
->
synchronizer
.
getCommunications
();
std
::
size_t
nb_nodes
;
buffer
>>
nb_nodes
;
for
(
auto
_
[[
gnu
::
unused
]]
:
arange
(
nb_nodes
))
{
Vector
<
Real
>
pos
(
spatial_dimension
);
Int
prank
;
buffer
>>
pos
;
buffer
>>
prank
;
UInt
node
=
nodes
.
size
();
this
->
setNodePrank
(
node
,
prank
);
nodes
.
push_back
(
pos
);
auto
&
scheme
=
communications
.
createRecvScheme
(
prank
);
scheme
.
push_back
(
node
);
}
while
(
buffer
.
getLeftToUnpack
()
!=
0
)
{
Int
prank
;
UInt
gnode
;
buffer
>>
gnode
;
buffer
>>
prank
;
auto
node
=
mesh
.
getNodeLocalId
(
gnode
);
AKANTU_DEBUG_ASSERT
(
node
!=
UInt
(
-
1
),
"I cannot send the node "
<<
gnode
<<
" to proc "
<<
prank
<<
" because it is note a local node"
);
auto
&
scheme
=
communications
.
createSendScheme
(
prank
);
scheme
.
push_back
(
node
);
}
}
/* -------------------------------------------------------------------------- */
void
NodeInfoPerProc
::
fillNodalData
(
DynamicCommunicationBuffer
&
buffer
,
std
::
string
tag_name
)
{
#define AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA(r, _, elem) \
case BOOST_PP_TUPLE_ELEM(2, 0, elem): { \
auto & nodal_data = \
mesh.getNodalData<BOOST_PP_TUPLE_ELEM(2, 1, elem)>(tag_name); \
nodal_data.resize(mesh.getNbNodes()); \
for (auto && data : make_view(nodal_data)) { \
buffer >> data; \
} \
break; \
}
MeshDataTypeCode
data_type_code
=
mesh
.
getTypeCode
(
tag_name
,
MeshDataType
::
_nodal
);
switch
(
data_type_code
)
{
BOOST_PP_SEQ_FOR_EACH
(
AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
,
,
AKANTU_MESH_DATA_TYPES
)
default
:
AKANTU_ERROR
(
"Could not obtain the type of tag"
<<
tag_name
<<
"!"
);
break
;
}
#undef AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
}
/* -------------------------------------------------------------------------- */
/* -------------------------------------------------------------------------- */
/* -------------------------------------------------------------------------- */
MasterNodeInfoPerProc
::
MasterNodeInfoPerProc
(
NodeSynchronizer
&
synchronizer
,
UInt
message_cnt
,
UInt
root
)
:
NodeInfoPerProc
(
synchronizer
,
message_cnt
,
root
),
all_nodes
(
0
,
synchronizer
.
getMesh
().
getSpatialDimension
())
{
UInt
nb_global_nodes
=
this
->
mesh
.
getNbGlobalNodes
();
this
->
comm
.
broadcast
(
nb_global_nodes
,
this
->
root
);
}
/* -------------------------------------------------------------------------- */
void
MasterNodeInfoPerProc
::
synchronizeNodes
()
{
this
->
nodes_per_proc
.
resize
(
nb_proc
);
this
->
nb_nodes_per_proc
.
resize
(
nb_proc
);
Array
<
Real
>
local_nodes
(
0
,
spatial_dimension
);
Array
<
Real
>
&
nodes
=
this
->
getNodes
();
all_nodes
.
copy
(
nodes
);
nodes_pranks
.
resize
(
nodes
.
size
(),
UInt
(
-
1
));
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
UInt
nb_nodes
=
0
;
// UInt * buffer;
Array
<
Real
>
*
nodes_to_send
;
Array
<
UInt
>
&
nodespp
=
nodes_per_proc
[
p
];
if
(
p
!=
root
)
{
nodes_to_send
=
new
Array
<
Real
>
(
0
,
spatial_dimension
);
AKANTU_DEBUG_INFO
(
"Receiving number of nodes from proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
p
,
0
,
Tag
::
_NB_NODES
));
comm
.
receive
(
nb_nodes
,
p
,
Tag
::
genTag
(
p
,
0
,
Tag
::
_NB_NODES
));
nodespp
.
resize
(
nb_nodes
);
this
->
nb_nodes_per_proc
(
p
)
=
nb_nodes
;
AKANTU_DEBUG_INFO
(
"Receiving list of nodes from proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
p
,
0
,
Tag
::
_NODES
));
comm
.
receive
(
nodespp
,
p
,
Tag
::
genTag
(
p
,
0
,
Tag
::
_NODES
));
}
else
{
Array
<
UInt
>
&
local_ids
=
this
->
getNodesGlobalIds
();
this
->
nb_nodes_per_proc
(
p
)
=
local_ids
.
size
();
nodespp
.
copy
(
local_ids
);
nodes_to_send
=
&
local_nodes
;
}
Array
<
UInt
>::
const_scalar_iterator
it
=
nodespp
.
begin
();
Array
<
UInt
>::
const_scalar_iterator
end
=
nodespp
.
end
();
/// get the coordinates for the selected nodes
for
(;
it
!=
end
;
++
it
)
{
Vector
<
Real
>
coord
(
nodes
.
storage
()
+
spatial_dimension
*
*
it
,
spatial_dimension
);
nodes_to_send
->
push_back
(
coord
);
}
if
(
p
!=
root
)
{
/// send them for distant processors
AKANTU_DEBUG_INFO
(
"Sending coordinates to proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_COORDINATES
));
comm
.
send
(
*
nodes_to_send
,
p
,
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_COORDINATES
));
delete
nodes_to_send
;
}
}
/// construct the local nodes coordinates
nodes
.
copy
(
local_nodes
);
}
/* -------------------------------------------------------------------------- */
void
MasterNodeInfoPerProc
::
synchronizeTypes
()
{
// <global_id, <proc, local_id> >
std
::
multimap
<
UInt
,
std
::
pair
<
UInt
,
UInt
>>
nodes_to_proc
;
std
::
vector
<
Array
<
NodeFlag
>>
nodes_flags_per_proc
(
nb_proc
);
std
::
vector
<
Array
<
Int
>>
nodes_prank_per_proc
(
nb_proc
);
if
(
mesh
.
isPeriodic
())
all_periodic_flags
.
copy
(
this
->
getNodesFlags
());
// arrays containing pairs of (proc, node)
std
::
vector
<
Array
<
UInt
>>
nodes_to_send_per_proc
(
nb_proc
);
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
nodes_flags_per_proc
[
p
].
resize
(
nb_nodes_per_proc
(
p
),
NodeFlag
(
0xFF
));
nodes_prank_per_proc
[
p
].
resize
(
nb_nodes_per_proc
(
p
),
-
1
);
}
this
->
fillNodesType
();
auto
is_master
=
[](
auto
&&
flag
)
{
return
(
flag
&
NodeFlag
::
_shared_mask
)
==
NodeFlag
::
_master
;
};
auto
is_local
=
[](
auto
&&
flag
)
{
return
(
flag
&
NodeFlag
::
_shared_mask
)
==
NodeFlag
::
_normal
;
};
for
(
auto
p
:
arange
(
nb_proc
))
{
auto
&
nodes_flags
=
nodes_flags_per_proc
[
p
];
if
(
p
!=
root
)
{
AKANTU_DEBUG_INFO
(
"Receiving first nodes types from proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
this
->
message_count
,
Tag
::
_NODES_TYPE
));
comm
.
receive
(
nodes_flags
,
p
,
Tag
::
genTag
(
p
,
0
,
Tag
::
_NODES_TYPE
));
}
else
{
nodes_flags
.
copy
(
this
->
getNodesFlags
());
}
// stack all processors claiming to be master for a node
for
(
auto
local_node
:
arange
(
nb_nodes_per_proc
(
p
)))
{
auto
global_node
=
nodes_per_proc
[
p
](
local_node
);
if
(
is_master
(
nodes_flags
(
local_node
)))
{
nodes_to_proc
.
insert
(
std
::
make_pair
(
global_node
,
std
::
make_pair
(
p
,
local_node
)));
}
else
if
(
is_local
(
nodes_flags
(
local_node
)))
{
nodes_pranks
[
global_node
]
=
p
;
}
}
}
for
(
auto
i
:
arange
(
mesh
.
getNbGlobalNodes
()))
{
auto
it_range
=
nodes_to_proc
.
equal_range
(
i
);
if
(
it_range
.
first
==
nodes_to_proc
.
end
()
||
it_range
.
first
->
first
!=
i
)
continue
;
// pick the first processor out of the multi-map as the actual master
UInt
master_proc
=
(
it_range
.
first
)
->
second
.
first
;
nodes_pranks
[
i
]
=
master_proc
;
for
(
auto
&&
data
:
range
(
it_range
.
first
,
it_range
.
second
))
{
auto
proc
=
data
.
second
.
first
;
auto
node
=
data
.
second
.
second
;
if
(
proc
!=
master_proc
)
{
// store the info on all the slaves for a given master
nodes_flags_per_proc
[
proc
](
node
)
=
NodeFlag
::
_slave
;
nodes_to_send_per_proc
[
master_proc
].
push_back
(
proc
);
nodes_to_send_per_proc
[
master_proc
].
push_back
(
i
);
}
}
}
/// Fills the nodes prank per proc
for
(
auto
&&
data
:
zip
(
arange
(
nb_proc
),
nodes_per_proc
,
nodes_prank_per_proc
,
nodes_flags_per_proc
))
{
for
(
auto
&&
node_data
:
zip
(
std
::
get
<
1
>
(
data
),
std
::
get
<
2
>
(
data
),
std
::
get
<
3
>
(
data
)))
{
if
(
std
::
get
<
2
>
(
node_data
)
==
NodeFlag
::
_normal
)
{
std
::
get
<
1
>
(
node_data
)
=
std
::
get
<
0
>
(
data
);
}
else
{
std
::
get
<
1
>
(
node_data
)
=
nodes_pranks
(
std
::
get
<
0
>
(
node_data
));
}
}
}
std
::
vector
<
CommunicationRequest
>
requests_send_type
;
std
::
vector
<
CommunicationRequest
>
requests_send_master_info
;
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
if
(
p
!=
root
)
{
AKANTU_DEBUG_INFO
(
"Sending nodes types to proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NODES_TYPE
));
requests_send_type
.
push_back
(
comm
.
asyncSend
(
nodes_flags_per_proc
[
p
],
p
,
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NODES_TYPE
)));
requests_send_type
.
push_back
(
comm
.
asyncSend
(
nodes_prank_per_proc
[
p
],
p
,
Tag
::
genTag
(
this
->
rank
,
2
,
Tag
::
_NODES_TYPE
)));
auto
&
nodes_to_send
=
nodes_to_send_per_proc
[
p
];
AKANTU_DEBUG_INFO
(
"Sending nodes master info to proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
1
,
Tag
::
_NODES_TYPE
));
requests_send_master_info
.
push_back
(
comm
.
asyncSend
(
nodes_to_send
,
p
,
Tag
::
genTag
(
this
->
rank
,
1
,
Tag
::
_NODES_TYPE
)));
}
else
{
this
->
getNodesFlags
().
copy
(
nodes_flags_per_proc
[
p
]);
for
(
auto
&&
data
:
enumerate
(
nodes_prank_per_proc
[
p
]))
{
auto
node
=
std
::
get
<
0
>
(
data
);
if
(
not
(
mesh
.
isMasterNode
(
node
)
or
mesh
.
isLocalNode
(
node
)))
{
this
->
setNodePrank
(
node
,
std
::
get
<
1
>
(
data
));
}
}
this
->
fillCommunicationScheme
(
nodes_to_send_per_proc
[
root
]);
}
}
comm
.
waitAll
(
requests_send_type
);
comm
.
freeCommunicationRequest
(
requests_send_type
);
requests_send_type
.
clear
();
comm
.
waitAll
(
requests_send_master_info
);
comm
.
freeCommunicationRequest
(
requests_send_master_info
);
}
/* -------------------------------------------------------------------------- */
void
MasterNodeInfoPerProc
::
synchronizeGroups
()
{
AKANTU_DEBUG_IN
();
UInt
nb_total_nodes
=
mesh
.
getNbGlobalNodes
();
DynamicCommunicationBuffer
buffer
;
using
NodeToGroup
=
std
::
vector
<
std
::
vector
<
std
::
string
>>
;
NodeToGroup
node_to_group
;
node_to_group
.
resize
(
nb_total_nodes
);
GroupManager
::
const_node_group_iterator
ngi
=
mesh
.
node_group_begin
();
GroupManager
::
const_node_group_iterator
nge
=
mesh
.
node_group_end
();
for
(;
ngi
!=
nge
;
++
ngi
)
{
NodeGroup
&
ng
=
*
(
ngi
->
second
);
std
::
string
name
=
ngi
->
first
;
NodeGroup
::
const_node_iterator
nit
=
ng
.
begin
();
NodeGroup
::
const_node_iterator
nend
=
ng
.
end
();
for
(;
nit
!=
nend
;
++
nit
)
{
node_to_group
[
*
nit
].
push_back
(
name
);
}
nit
=
ng
.
begin
();
if
(
nit
!=
nend
)
ng
.
empty
();
}
buffer
<<
node_to_group
;
std
::
vector
<
CommunicationRequest
>
requests
;
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
if
(
p
==
this
->
rank
)
continue
;
AKANTU_DEBUG_INFO
(
"Sending node groups to proc "
<<
p
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
p
,
Tag
::
_NODE_GROUP
));
requests
.
push_back
(
comm
.
asyncSend
(
buffer
,
p
,
Tag
::
genTag
(
this
->
rank
,
p
,
Tag
::
_NODE_GROUP
)));
}
this
->
fillNodeGroupsFromBuffer
(
buffer
);
comm
.
waitAll
(
requests
);
comm
.
freeCommunicationRequest
(
requests
);
requests
.
clear
();
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
MasterNodeInfoPerProc
::
synchronizePeriodicity
()
{
bool
is_periodic
=
mesh
.
isPeriodic
();
comm
.
broadcast
(
is_periodic
,
root
);
if
(
not
is_periodic
)
return
;
std
::
vector
<
CommunicationRequest
>
requests
;
std
::
vector
<
Array
<
UInt
>>
periodic_info_to_send_per_proc
;
for
(
auto
p
:
arange
(
nb_proc
))
{
periodic_info_to_send_per_proc
.
emplace_back
(
0
,
2
);
auto
&&
periodic_info
=
periodic_info_to_send_per_proc
.
back
();
for
(
UInt
proc_local_node
:
arange
(
nb_nodes_per_proc
(
p
)))
{
UInt
global_node
=
nodes_per_proc
[
p
](
proc_local_node
);
if
((
all_periodic_flags
[
global_node
]
&
NodeFlag
::
_periodic_mask
)
==
NodeFlag
::
_periodic_slave
)
{
periodic_info
.
push_back
(
Vector
<
UInt
>
{
global_node
,
mesh
.
getPeriodicMaster
(
global_node
)});
}
}
if
(
p
==
root
)
continue
;
auto
&&
tag
=
Tag
::
genTag
(
this
->
rank
,
p
,
Tag
::
_PERIODIC_SLAVES
);
AKANTU_DEBUG_INFO
(
"Sending periodic info to proc "
<<
p
<<
" "
<<
tag
);
requests
.
push_back
(
comm
.
asyncSend
(
periodic_info
,
p
,
tag
));
}
CommunicationStatus
status
;
std
::
vector
<
DynamicCommunicationBuffer
>
buffers
(
nb_proc
);
std
::
vector
<
std
::
vector
<
UInt
>>
proc_missings
(
nb_proc
);
auto
nodes_it
=
all_nodes
.
begin
(
spatial_dimension
);
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
auto
&
proc_missing
=
proc_missings
[
p
];
if
(
p
!=
root
)
{
auto
&&
tag
=
Tag
::
genTag
(
p
,
0
,
Tag
::
_PERIODIC_NODES
);
comm
.
probe
<
UInt
>
(
p
,
tag
,
status
);
proc_missing
.
resize
(
status
.
size
());
comm
.
receive
(
proc_missing
,
p
,
tag
);
}
else
{
fillPeriodicPairs
(
periodic_info_to_send_per_proc
[
root
],
proc_missing
);
}
auto
&
buffer
=
buffers
[
p
];
buffer
.
reserve
((
spatial_dimension
*
sizeof
(
Real
)
+
sizeof
(
Int
))
*
proc_missing
.
size
());
buffer
<<
proc_missing
.
size
();
for
(
auto
&&
node
:
proc_missing
)
{
buffer
<<
*
(
nodes_it
+
node
);
buffer
<<
nodes_pranks
(
node
);
}
}
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
for
(
auto
&&
node
:
proc_missings
[
p
])
{
auto
&
buffer
=
buffers
[
nodes_pranks
(
node
)];
buffer
<<
node
;
buffer
<<
p
;
}
}
for
(
UInt
p
=
0
;
p
<
nb_proc
;
++
p
)
{
if
(
p
!=
root
)
{
auto
&&
tag_send
=
Tag
::
genTag
(
p
,
1
,
Tag
::
_PERIODIC_NODES
);
requests
.
push_back
(
comm
.
asyncSend
(
buffers
[
p
],
p
,
tag_send
));
}
else
{
receiveMissingPeriodic
(
buffers
[
p
]);
}
}
comm
.
waitAll
(
requests
);
comm
.
freeCommunicationRequest
(
requests
);
requests
.
clear
();
}
/* -------------------------------------------------------------------------- */
void
MasterNodeInfoPerProc
::
fillTagBuffers
(
std
::
vector
<
DynamicCommunicationBuffer
>
&
buffers
,
const
std
::
string
&
tag_name
)
{
#define AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA(r, _, elem) \
case BOOST_PP_TUPLE_ELEM(2, 0, elem): { \
auto & nodal_data = \
mesh.getNodalData<BOOST_PP_TUPLE_ELEM(2, 1, elem)>(tag_name); \
for (auto && data : enumerate(nodes_per_proc)) { \
auto proc = std::get<0>(data); \
auto & nodes = std::get<1>(data); \
auto & buffer = buffers[proc]; \
for (auto & node : nodes) { \
for (auto i : arange(nodal_data.getNbComponent())) { \
buffer << nodal_data(node, i); \
} \
} \
} \
break; \
}
MeshDataTypeCode
data_type_code
=
mesh
.
getTypeCode
(
tag_name
,
MeshDataType
::
_nodal
);
switch
(
data_type_code
)
{
BOOST_PP_SEQ_FOR_EACH
(
AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
,
,
AKANTU_MESH_DATA_TYPES
)
default
:
AKANTU_ERROR
(
"Could not obtain the type of tag"
<<
tag_name
<<
"!"
);
break
;
}
#undef AKANTU_DISTRIBUTED_SYNHRONIZER_TAG_DATA
}
// namespace akantu
/* -------------------------------------------------------------------------- */
void
MasterNodeInfoPerProc
::
synchronizeTags
()
{
/// tag info
auto
tag_names
=
mesh
.
getTagNames
();
DynamicCommunicationBuffer
tags_buffer
;
for
(
auto
&&
tag_name
:
tag_names
)
{
tags_buffer
<<
tag_name
;
tags_buffer
<<
mesh
.
getTypeCode
(
tag_name
,
MeshDataType
::
_nodal
);
tags_buffer
<<
mesh
.
getNbComponent
(
tag_name
);
}
UInt
tags_buffer_length
=
tags_buffer
.
size
();
AKANTU_DEBUG_INFO
(
"Broadcasting the size of the information about the mesh data tags: ("
<<
tags_buffer_length
<<
")."
);
comm
.
broadcast
(
tags_buffer_length
,
root
);
if
(
tags_buffer_length
!=
0
)
comm
.
broadcast
(
tags_buffer
,
root
);
for
(
auto
&&
tag_data
:
enumerate
(
tag_names
))
{
auto
tag_count
=
std
::
get
<
0
>
(
tag_data
);
auto
&
tag_name
=
std
::
get
<
1
>
(
tag_data
);
std
::
vector
<
DynamicCommunicationBuffer
>
buffers
;
std
::
vector
<
CommunicationRequest
>
requests
;
buffers
.
resize
(
nb_proc
);
fillTagBuffers
(
buffers
,
tag_name
);
for
(
auto
&&
data
:
enumerate
(
buffers
))
{
auto
&&
proc
=
std
::
get
<
0
>
(
data
);
auto
&
buffer
=
std
::
get
<
1
>
(
data
);
if
(
proc
==
root
)
{
fillNodalData
(
buffer
,
tag_name
);
}
else
{
auto
&&
tag
=
Tag
::
genTag
(
this
->
rank
,
tag_count
,
Tag
::
_MESH_DATA
);
requests
.
push_back
(
comm
.
asyncSend
(
buffer
,
proc
,
tag
));
}
}
comm
.
waitAll
(
requests
);
comm
.
freeCommunicationRequest
(
requests
);
}
}
/* -------------------------------------------------------------------------- */
/* -------------------------------------------------------------------------- */
/* -------------------------------------------------------------------------- */
SlaveNodeInfoPerProc
::
SlaveNodeInfoPerProc
(
NodeSynchronizer
&
synchronizer
,
UInt
message_cnt
,
UInt
root
)
:
NodeInfoPerProc
(
synchronizer
,
message_cnt
,
root
)
{
UInt
nb_global_nodes
=
0
;
comm
.
broadcast
(
nb_global_nodes
,
root
);
this
->
setNbGlobalNodes
(
nb_global_nodes
);
}
/* -------------------------------------------------------------------------- */
void
SlaveNodeInfoPerProc
::
synchronizeNodes
()
{
AKANTU_DEBUG_INFO
(
"Sending list of nodes to proc "
<<
root
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NB_NODES
)
<<
" "
<<
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NODES
));
Array
<
UInt
>
&
local_ids
=
this
->
getNodesGlobalIds
();
Array
<
Real
>
&
nodes
=
this
->
getNodes
();
UInt
nb_nodes
=
local_ids
.
size
();
comm
.
send
(
nb_nodes
,
root
,
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NB_NODES
));
comm
.
send
(
local_ids
,
root
,
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NODES
));
/* --------<<<<-COORDINATES---------------------------------------------- */
nodes
.
resize
(
nb_nodes
);
AKANTU_DEBUG_INFO
(
"Receiving coordinates from proc "
<<
root
<<
" "
<<
Tag
::
genTag
(
root
,
0
,
Tag
::
_COORDINATES
));
comm
.
receive
(
nodes
,
root
,
Tag
::
genTag
(
root
,
0
,
Tag
::
_COORDINATES
));
}
/* -------------------------------------------------------------------------- */
void
SlaveNodeInfoPerProc
::
synchronizeTypes
()
{
this
->
fillNodesType
();
auto
&
nodes_types
=
this
->
getNodesFlags
();
AKANTU_DEBUG_INFO
(
"Sending first nodes types to proc "
<<
root
<<
""
<<
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NODES_TYPE
));
comm
.
send
(
nodes_types
,
root
,
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_NODES_TYPE
));
AKANTU_DEBUG_INFO
(
"Receiving nodes types from proc "
<<
root
<<
" "
<<
Tag
::
genTag
(
root
,
0
,
Tag
::
_NODES_TYPE
));
comm
.
receive
(
nodes_types
,
root
,
Tag
::
genTag
(
root
,
0
,
Tag
::
_NODES_TYPE
));
Array
<
Int
>
nodes_prank
(
nodes_types
.
size
());
comm
.
receive
(
nodes_prank
,
root
,
Tag
::
genTag
(
root
,
2
,
Tag
::
_NODES_TYPE
));
for
(
auto
&&
data
:
enumerate
(
nodes_prank
))
{
auto
node
=
std
::
get
<
0
>
(
data
);
if
(
not
(
mesh
.
isMasterNode
(
node
)
or
mesh
.
isLocalNode
(
node
)))
{
this
->
setNodePrank
(
node
,
std
::
get
<
1
>
(
data
));
}
}
AKANTU_DEBUG_INFO
(
"Receiving nodes master info from proc "
<<
root
<<
" "
<<
Tag
::
genTag
(
root
,
1
,
Tag
::
_NODES_TYPE
));
CommunicationStatus
status
;
comm
.
probe
<
UInt
>
(
root
,
Tag
::
genTag
(
root
,
1
,
Tag
::
_NODES_TYPE
),
status
);
Array
<
UInt
>
nodes_master_info
(
status
.
size
());
if
(
nodes_master_info
.
size
()
>
0
)
comm
.
receive
(
nodes_master_info
,
root
,
Tag
::
genTag
(
root
,
1
,
Tag
::
_NODES_TYPE
));
this
->
fillCommunicationScheme
(
nodes_master_info
);
}
/* -------------------------------------------------------------------------- */
void
SlaveNodeInfoPerProc
::
synchronizeGroups
()
{
AKANTU_DEBUG_IN
();
AKANTU_DEBUG_INFO
(
"Receiving node groups from proc "
<<
root
<<
" "
<<
Tag
::
genTag
(
root
,
this
->
rank
,
Tag
::
_NODE_GROUP
));
CommunicationStatus
status
;
comm
.
probe
<
char
>
(
root
,
Tag
::
genTag
(
root
,
this
->
rank
,
Tag
::
_NODE_GROUP
),
status
);
CommunicationBuffer
buffer
(
status
.
size
());
comm
.
receive
(
buffer
,
root
,
Tag
::
genTag
(
root
,
this
->
rank
,
Tag
::
_NODE_GROUP
));
this
->
fillNodeGroupsFromBuffer
(
buffer
);
AKANTU_DEBUG_OUT
();
}
/* -------------------------------------------------------------------------- */
void
SlaveNodeInfoPerProc
::
synchronizePeriodicity
()
{
bool
is_periodic
;
comm
.
broadcast
(
is_periodic
,
root
);
if
(
not
is_periodic
)
return
;
CommunicationStatus
status
;
auto
&&
tag
=
Tag
::
genTag
(
root
,
this
->
rank
,
Tag
::
_PERIODIC_SLAVES
);
comm
.
probe
<
UInt
>
(
root
,
tag
,
status
);
Array
<
UInt
>
periodic_info
(
status
.
size
()
/
2
,
2
);
comm
.
receive
(
periodic_info
,
root
,
tag
);
std
::
vector
<
UInt
>
proc_missing
;
fillPeriodicPairs
(
periodic_info
,
proc_missing
);
auto
&&
tag_missing_request
=
Tag
::
genTag
(
this
->
rank
,
0
,
Tag
::
_PERIODIC_NODES
);
comm
.
send
(
proc_missing
,
root
,
tag_missing_request
);
DynamicCommunicationBuffer
buffer
;
auto
&&
tag_missing
=
Tag
::
genTag
(
this
->
rank
,
1
,
Tag
::
_PERIODIC_NODES
);
comm
.
receive
(
buffer
,
root
,
tag_missing
);
receiveMissingPeriodic
(
buffer
);
}
/* -------------------------------------------------------------------------- */
void
SlaveNodeInfoPerProc
::
synchronizeTags
()
{
UInt
tags_buffer_length
{
0
};
comm
.
broadcast
(
tags_buffer_length
,
root
);
if
(
tags_buffer_length
==
0
)
{
return
;
}
CommunicationBuffer
tags_buffer
;
tags_buffer
.
resize
(
tags_buffer_length
);
comm
.
broadcast
(
tags_buffer
,
root
);
std
::
vector
<
std
::
string
>
tag_names
;
while
(
tags_buffer
.
getLeftToUnpack
()
>
0
)
{
std
::
string
name
;
MeshDataTypeCode
code
;
UInt
nb_components
;
tags_buffer
>>
name
;
tags_buffer
>>
code
;
tags_buffer
>>
nb_components
;
mesh
.
registerNodalData
(
name
,
nb_components
,
code
);
tag_names
.
push_back
(
name
);
}
for
(
auto
&&
tag_data
:
enumerate
(
tag_names
))
{
auto
tag_count
=
std
::
get
<
0
>
(
tag_data
);
auto
&
tag_name
=
std
::
get
<
1
>
(
tag_data
);
DynamicCommunicationBuffer
buffer
;
auto
&&
tag
=
Tag
::
genTag
(
this
->
root
,
tag_count
,
Tag
::
_MESH_DATA
);
comm
.
receive
(
buffer
,
this
->
root
,
tag
);
fillNodalData
(
buffer
,
tag_name
);
}
}
}
// namespace akantu
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