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dumper.cc
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Created
Thu, Aug 15, 08:45
Size
9 KB
Mime Type
text/x-c
Expires
Sat, Aug 17, 08:45 (2 d)
Engine
blob
Format
Raw Data
Handle
19892931
Attached To
rAKA akantu
dumper.cc
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/**
* @file dumper.cc
*
* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
* @author David Simon Kammer <david.kammer@epfl.ch>
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Thu Mar 11 2010
* @date last modification: Mon Jun 10 2013
*
* @brief implementation of main dumper
*
* @section LICENSE
*
* Copyright (©) 2010-2012, 2014 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* IOHelper is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* IOHelper is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with IOHelper. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include <cmath>
#include "dumper.hh"
#include "field_inline_impl.cc"
#include "variable_inline_impl.cc"
/* -------------------------------------------------------------------------- */
#if defined(__INTEL_COMPILER)
/// remark #981: operands are evaluated in unspecified order
#pragma warning ( disable : 981 )
#endif
//defined(__INTEL_COMPILER)
__BEGIN_IOHELPER__
/* -------------------------------------------------------------------------- */
Dumper
::
Dumper
(
std
::
string
prefix
)
:
dump_step
(
0
),
dump_step_width
(
4
),
time_step
(
0
),
current_time
(
0
),
write_time_desc_file
(
false
),
mode
(
0
),
world_size
(
-
1
),
my_rank
(
-
1
),
root_rank
(
0
),
my_rank_width
(
3
),
time_description_file_name
(
""
)
{
// needs to be after the definition of the directory separator
this
->
setPrefix
(
prefix
);
}
/* -------------------------------------------------------------------------- */
Dumper
::
Dumper
(
std
::
string
prefix
,
const
std
::
string
&
base_name
)
:
dump_step
(
0
),
dump_step_width
(
4
),
time_step
(
0
),
current_time
(
0
),
write_time_desc_file
(
false
),
mode
(
0
),
world_size
(
-
1
),
my_rank
(
-
1
),
root_rank
(
0
),
my_rank_width
(
3
),
time_description_file_name
(
""
)
{
// needs to be after the definition of the directory separator
this
->
setPrefix
(
prefix
);
setBaseName
(
base_name
);
}
/* -------------------------------------------------------------------------- */
Dumper
::~
Dumper
(){
{
std
::
map
<
std
::
string
,
FieldInterface
*>::
iterator
it
=
per_node_data
.
begin
();
std
::
map
<
std
::
string
,
FieldInterface
*>::
iterator
end
=
per_node_data
.
end
();
while
(
it
!=
end
){
delete
(
*
it
).
second
;
++
it
;
}
}
{
std
::
map
<
std
::
string
,
FieldInterface
*>::
iterator
it
=
per_element_data
.
begin
();
std
::
map
<
std
::
string
,
FieldInterface
*>::
iterator
end
=
per_element_data
.
end
();
while
(
it
!=
end
){
delete
(
*
it
).
second
;
++
it
;
}
}
{
std
::
map
<
std
::
string
,
VariableInterface
*>::
iterator
it
=
global_data
.
begin
();
std
::
map
<
std
::
string
,
VariableInterface
*>::
iterator
end
=
global_data
.
end
();
while
(
it
!=
end
){
delete
(
*
it
).
second
;
++
it
;
}
}
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
dump
(
const
std
::
string
&
name
,
UInt
count
)
{
if
(
count
!=
UInt
(
-
1
))
dump_step
=
count
;
if
(
name
!=
""
)
base_name
=
name
;
if
(
time_description_file_name
==
""
)
time_description_file_name
=
base_name
;
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
registerDumpOptions
(
const
std
::
string
&
key
,
const
std
::
string
&
folder
,
const
std
::
string
&
extension
,
DumpFlag
dump_flag
)
{
DumpOptions
&
dos
=
dump_options
[
key
];
dos
.
setFolder
(
folder
);
dos
.
extension
=
extension
;
dos
.
dump_flags
=
dump_flag
;
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
init
(){
if
(
world_size
==
-
1
||
my_rank
==
-
1
){
// DUMP("world_size and my_rank variables are not well set: going to sequential dump");
world_size
=
1
;
my_rank
=
0
;
}
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
setPoints
(
Real
*
points
,
int
dimension
,
int
nb
,
const
std
::
string
&
name
)
{
addNodeDataField
(
std
::
string
(
"positions"
),
points
,
dimension
,
nb
);
setBaseName
(
name
);
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
setBaseName
(
const
std
::
string
&
name
)
{
this
->
base_name
=
name
;
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
setConnectivity
(
int
*
connectivity
,
ElemType
elem_type
,
UInt
nb_elem
,
int
mode
)
{
addElemDataField
(
std
::
string
(
"connectivities"
),
connectivity
,
elem_type
,
nb_node_per_elem
[
elem_type
],
nb_elem
);
// ElemType * types = new ElemType[nb_elem];
// for (UInt i = 0; i < nb_elem; ++i) {
// types[i] = elem_type;
// }
// addElemDataField(std::string("element_type"), types, 1, nb_elem);
connectivity_mode
=
mode
;
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
DumpOptions
::
setFolder
(
const
std
::
string
&
fld
)
{
this
->
folder
=
Dumper
::
checkDirectoryName
(
fld
);;
}
/* -------------------------------------------------------------------------- */
const
std
::
string
&
Dumper
::
DumpOptions
::
getFolder
()
const
{
return
this
->
folder
;
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
checkDirectoryName
(
std
::
string
fname
)
{
if
(
fname
.
size
()
>
0
&&
fname
[
fname
.
size
()
-
1
]
!=
IOHELPER_DIRECTORY_SEPARATOR
)
{
fname
+=
IOHELPER_DIRECTORY_SEPARATOR
;
}
return
fname
;
}
/* -------------------------------------------------------------------------- */
Dumper
::
DumpOptions
&
Dumper
::
getDumpOptions
(
const
std
::
string
&
key
)
{
DumpOptionsMap
::
iterator
it
=
this
->
dump_options
.
find
(
key
);
if
(
it
==
this
->
dump_options
.
end
())
IOHELPER_THROW
(
"No dump options registered under the name "
<<
key
,
_et_options_error
);
return
it
->
second
;
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getRelativeFilePath
(
const
std
::
string
&
name
,
const
std
::
string
&
key
,
UInt
proc
)
{
return
this
->
getRelativeFolderPath
(
key
)
+
this
->
getFileName
(
name
,
key
,
proc
);
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getRelativeFilePath
(
const
std
::
string
&
name
,
const
std
::
string
&
key
)
{
return
this
->
getRelativeFolderPath
(
key
)
+
this
->
getFileName
(
name
,
key
);
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getAbsoluteFilePath
(
const
std
::
string
&
name
,
const
std
::
string
&
key
,
UInt
proc
)
{
return
prefix
+
this
->
getRelativeFilePath
(
name
,
key
,
proc
);
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getAbsoluteFilePath
(
const
std
::
string
&
name
,
const
std
::
string
&
key
)
{
return
prefix
+
this
->
getRelativeFilePath
(
name
,
key
);
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getFileName
(
const
std
::
string
&
name
,
const
std
::
string
&
key
)
{
return
this
->
getFileName
(
name
,
key
,
this
->
my_rank
);
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getFileName
(
const
std
::
string
&
name
,
const
std
::
string
&
key
,
UInt
proc
)
{
std
::
stringstream
sstr
;
sstr
<<
name
;
const
DumpOptions
&
dos
=
this
->
getDumpOptions
(
key
);
if
(
dos
.
dump_flags
&
_df_counter
)
{
sstr
<<
"_"
;
sstr
.
width
(
this
->
dump_step_width
);
sstr
.
fill
(
'0'
);
sstr
<<
dump_step
;
}
if
(
world_size
>
1
&&
(
dos
.
dump_flags
&
_df_proc_id
))
{
sstr
<<
".proc"
;
sstr
.
width
(
this
->
my_rank_width
);
sstr
.
fill
(
'0'
);
sstr
<<
proc
;
}
sstr
<<
dos
.
extension
;
return
sstr
.
str
();
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getRelativeFolderPath
(
const
std
::
string
&
key
)
{
return
getDumpOptions
(
key
).
getFolder
();
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getAbsoluteFolderPath
(
const
std
::
string
&
key
)
{
return
prefix
+
this
->
getRelativeFolderPath
(
key
);
}
/* -------------------------------------------------------------------------- */
std
::
string
Dumper
::
getBaseName
()
{
return
this
->
base_name
;
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
setParallelContext
(
int
me
,
int
wld_size
,
int
root
)
{
this
->
my_rank
=
me
;
this
->
world_size
=
wld_size
;
this
->
my_rank_width
=
std
::
ceil
(
std
::
log10
(
this
->
world_size
));
this
->
root_rank
=
root
;
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
printNodeDataFields
()
{
std
::
map
<
std
::
string
,
FieldInterface
*>::
iterator
it
=
per_node_data
.
begin
();
std
::
map
<
std
::
string
,
FieldInterface
*>::
iterator
end
=
per_node_data
.
end
();
int
count
=
0
;
while
(
it
!=
end
){
std
::
cout
<<
"Field "
<<
++
count
<<
" : "
<<
it
->
second
->
getName
()
<<
std
::
endl
;
++
it
;
}
}
/* -------------------------------------------------------------------------- */
void
Dumper
::
activateTimeDescFiles
(
Real
delta_t
,
Real
initial_time
)
{
this
->
time_step
=
delta_t
;
this
->
current_time
=
initial_time
;
this
->
write_time_desc_file
=
true
;
}
/* -------------------------------------------------------------------------- */
__END_IOHELPER__
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