Homec4science
Diffusion akantu (bugfixes/60-hybrid-phase-field-formulation-unstable-in-dynamics) Browse

rAKA/src/synchronizer/dof_synchronizer.cc
5dbea3e35321bugfixes/60-hybrid…

Last Change
Raw File

dof_synchronizer.cc
View Options

/**
* @file dof_synchronizer.cc
*
* @author Aurelia Isabel Cuba Ramos <aurelia.cubaramos@epfl.ch>
* @author Nicolas Richart <nicolas.richart@epfl.ch>
*
* @date creation: Fri Jun 17 2011
* @date last modification: Tue Feb 06 2018
*
* @brief DOF synchronizing object implementation
*
*
* Copyright (©) 2010-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include "dof_synchronizer.hh"
#include "aka_iterators.hh"
#include "dof_manager_default.hh"
#include "mesh.hh"
#include "node_synchronizer.hh"
/* -------------------------------------------------------------------------- */
#include <algorithm>
/* -------------------------------------------------------------------------- */
namespace akantu {
/* -------------------------------------------------------------------------- */
/**
* A DOFSynchronizer needs a mesh and the number of degrees of freedom
* per node to be created. In the constructor computes the local and global dof
* number for each dof. The member
* proc_informations (std vector) is resized with the number of mpi
* processes. Each entry in the vector is a PerProcInformations object
* that contains the interactions of the current mpi process (prank) with the
* mpi process corresponding to the position of that entry. Every
* ProcInformations object contains one array with the dofs that have
* to be sent to prank and a second one with dofs that willl be received form
* prank.
* This information is needed for the asychronous communications. The
* constructor sets up this information.
*/
DOFSynchronizer::DOFSynchronizer(DOFManagerDefault & dof_manager, const ID & id)
: SynchronizerImpl<UInt>(dof_manager.getCommunicator(), id),
dof_manager(dof_manager) {
std::vector<ID> dof_ids = dof_manager.getDOFIDs();
// Transfers nodes to global equation numbers in new schemes
for (const ID & dof_id : dof_ids) {
registerDOFs(dof_id);
}
}
/* -------------------------------------------------------------------------- */
DOFSynchronizer::~DOFSynchronizer() = default;
/* -------------------------------------------------------------------------- */
void DOFSynchronizer::registerDOFs(const ID & dof_id) {
if (this->nb_proc == 1) {
return;
}
if (dof_manager.getSupportType(dof_id) != _dst_nodal) {
return;
}
const auto & equation_numbers = dof_manager.getLocalEquationsNumbers(dof_id);
const auto & associated_nodes = dof_manager.getDOFsAssociatedNodes(dof_id);
const auto & node_synchronizer = dof_manager.getMesh().getNodeSynchronizer();
const auto & node_communications = node_synchronizer.getCommunications();
auto transcode_node_to_global_dof_scheme =
[this, &associated_nodes, &equation_numbers](
auto && it, auto && end, const CommunicationSendRecv & sr) -> void {
for (; it != end; ++it) {
auto & scheme = communications.createScheme(it->first, sr);
const auto & node_scheme = it->second;
for (auto & node : node_scheme) {
auto an_begin = associated_nodes.begin();
auto an_it = an_begin;
auto an_end = associated_nodes.end();
std::vector<UInt> global_dofs_per_node;
while ((an_it = std::find(an_it, an_end, node)) != an_end) {
UInt pos = an_it - an_begin;
UInt local_eq_num = equation_numbers(pos);
UInt global_eq_num =
dof_manager.localToGlobalEquationNumber(local_eq_num);
global_dofs_per_node.push_back(global_eq_num);
++an_it;
}
std::sort(global_dofs_per_node.begin(), global_dofs_per_node.end());
std::transform(global_dofs_per_node.begin(), global_dofs_per_node.end(),
global_dofs_per_node.begin(), [this](UInt g) -> UInt {
UInt l = dof_manager.globalToLocalEquationNumber(g);
return l;
});
for (auto & leqnum : global_dofs_per_node) {
scheme.push_back(leqnum);
}
}
}
};
for (auto sr : send_recv_t{}) {
auto ncs_it = node_communications.begin_scheme(sr);
auto ncs_end = node_communications.end_scheme(sr);
transcode_node_to_global_dof_scheme(ncs_it, ncs_end, sr);
}
entities_changed = true;
}
/* -------------------------------------------------------------------------- */
void DOFSynchronizer::fillEntityToSend(Array<UInt> & dofs_to_send) {
UInt nb_dofs = dof_manager.getLocalSystemSize();
this->entities_from_root.zero();
dofs_to_send.resize(0);
for (UInt d : arange(nb_dofs)) {
if (not dof_manager.isLocalOrMasterDOF(d)) {
continue;
}
entities_from_root.push_back(d);
}
for (auto d : entities_from_root) {
UInt global_dof = dof_manager.localToGlobalEquationNumber(d);
dofs_to_send.push_back(global_dof);
}
}
/* -------------------------------------------------------------------------- */
void DOFSynchronizer::onNodesAdded(const Array<UInt> & /*nodes_list*/) {
auto dof_ids = dof_manager.getDOFIDs();
for (auto sr : iterate_send_recv) {
for (auto && data : communications.iterateSchemes(sr)) {
auto & scheme = data.second;
scheme.resize(0);
}
}
for (auto & dof_id : dof_ids) {
registerDOFs(dof_id);
}
// const auto & node_synchronizer =
// dof_manager.getMesh().getNodeSynchronizer(); const auto &
// node_communications = node_synchronizer.getCommunications();
// std::map<UInt, std::vector<UInt>> nodes_per_proc[2];
// for (auto sr : iterate_send_recv) {
// for (auto && data : node_communications.iterateSchemes(sr)) {
// auto proc = data.first;
// const auto & scheme = data.second;
// for (auto node : scheme) {
// nodes_per_proc[sr][proc].push_back(node);
// }
// }
// }
// std::map<UInt, std::vector<UInt>> dofs_per_proc[2];
// for (auto & dof_id : dof_ids) {
// const auto & associated_nodes =
// dof_manager.getDOFsAssociatedNodes(dof_id); const auto &
// local_equation_numbers =
// dof_manager.getEquationsNumbers(dof_id);
// for (auto tuple : zip(associated_nodes, local_equation_numbers)) {
// UInt assoc_node;
// UInt local_eq_num;
// std::tie(assoc_node, local_eq_num) = tuple;
// for (auto sr_it = send_recv_t::begin(); sr_it != send_recv_t::end();
// ++sr_it) {
// for (auto & pair : nodes_per_proc[*sr_it]) {
// if (std::find(pair.second.end(), pair.second.end(), assoc_node) !=
// pair.second.end()) {
// dofs_per_proc[*sr_it][pair.first].push_back(local_eq_num);
// }
// }
// }
// }
// }
// for (auto sr_it = send_recv_t::begin(); sr_it != send_recv_t::end();
// ++sr_it) {
// for (auto & pair : dofs_per_proc[*sr_it]) {
// std::sort(pair.second.begin(), pair.second.end(),
// [this](UInt la, UInt lb) -> bool {
// UInt ga = dof_manager.localToGlobalEquationNumber(la);
// UInt gb = dof_manager.localToGlobalEquationNumber(lb);
// return ga < gb;
// });
// auto & scheme = communications.getScheme(pair.first, *sr_it);
// scheme.resize(0);
// for (auto leq : pair.second) {
// scheme.push_back(leq);
// }
// }
// }
this->entities_changed = true;
}
} // namespace akantu
c4science · Help