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test_petsc_matrix_profile.cc
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rAKA akantu
test_petsc_matrix_profile.cc
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/**
* @file test_petsc_matrix_profile.cc
* @author Aurelia Cuba Ramos <aurelia.cubaramos@epfl.ch>
* @date Wed Jul 30 12:34:08 2014
*
* @brief test the profile generation of the PETScMatrix class
*
* @section LICENSE
*
* Copyright (©) 2010-2011 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include <cstdlib>
/* -------------------------------------------------------------------------- */
#include "static_communicator.hh"
#include "aka_common.hh"
#include "aka_csr.hh"
#include "mesh.hh"
#include "mesh_io.hh"
#include "mesh_utils.hh"
#include "distributed_synchronizer.hh"
#include "petsc_matrix.hh"
#include "fe_engine.hh"
#include "dof_synchronizer.hh"
#include "mesh_partition_scotch.hh"
using
namespace
akantu
;
int
main
(
int
argc
,
char
*
argv
[])
{
initialize
(
argc
,
argv
);
const
ElementType
element_type
=
_triangle_3
;
const
GhostType
ghost_type
=
_not_ghost
;
UInt
spatial_dimension
=
2
;
StaticCommunicator
&
comm
=
akantu
::
StaticCommunicator
::
getStaticCommunicator
();
Int
psize
=
comm
.
getNbProc
();
Int
prank
=
comm
.
whoAmI
();
/// read the mesh and partition it
Mesh
mesh
(
spatial_dimension
);
/* ------------------------------------------------------------------------ */
/* Parallel initialization */
/* ------------------------------------------------------------------------ */
DistributedSynchronizer
*
communicator
=
NULL
;
if
(
prank
==
0
)
{
/// creation mesh
mesh
.
read
(
"triangle.msh"
);
MeshPartitionScotch
*
partition
=
new
MeshPartitionScotch
(
mesh
,
spatial_dimension
);
partition
->
partitionate
(
psize
);
communicator
=
DistributedSynchronizer
::
createDistributedSynchronizerMesh
(
mesh
,
partition
);
delete
partition
;
}
else
{
communicator
=
DistributedSynchronizer
::
createDistributedSynchronizerMesh
(
mesh
,
NULL
);
}
FEEngine
*
fem
=
new
FEEngineTemplate
<
IntegratorGauss
,
ShapeLagrange
,
_ek_regular
>
(
mesh
,
spatial_dimension
,
"my_fem"
);
DOFSynchronizer
dof_synchronizer
(
mesh
,
spatial_dimension
);
UInt
nb_global_nodes
=
mesh
.
getNbGlobalNodes
();
dof_synchronizer
.
initGlobalDOFEquationNumbers
();
// fill the matrix with
UInt
nb_element
=
mesh
.
getNbElement
(
element_type
);
UInt
nb_nodes_per_element
=
mesh
.
getNbNodesPerElement
(
element_type
);
UInt
nb_dofs_per_element
=
spatial_dimension
*
nb_nodes_per_element
;
SparseMatrix
K
(
nb_global_nodes
*
spatial_dimension
,
_symmetric
);
K
.
buildProfile
(
mesh
,
dof_synchronizer
,
spatial_dimension
);
Matrix
<
Real
>
element_input
(
nb_dofs_per_element
,
nb_dofs_per_element
,
1
);
Array
<
Real
>
K_e
=
Array
<
Real
>
(
nb_element
,
nb_dofs_per_element
*
nb_dofs_per_element
,
"K_e"
);
Array
<
Real
>::
matrix_iterator
K_e_it
=
K_e
.
begin
(
nb_dofs_per_element
,
nb_dofs_per_element
);
Array
<
Real
>::
matrix_iterator
K_e_end
=
K_e
.
end
(
nb_dofs_per_element
,
nb_dofs_per_element
);
for
(;
K_e_it
!=
K_e_end
;
++
K_e_it
)
*
K_e_it
=
element_input
;
// assemble the test matrix
fem
->
assembleMatrix
(
K_e
,
K
,
spatial_dimension
,
element_type
,
ghost_type
);
CSR
<
Element
>
node_to_elem
;
MeshUtils
::
buildNode2Elements
(
mesh
,
node_to_elem
,
spatial_dimension
);
for
(
UInt
i
=
0
;
i
<
mesh
.
getNbNodes
();
++
i
)
{
std
::
cout
<<
node_to_elem
.
getNbCols
(
i
)
<<
std
::
endl
;
}
PETScMatrix
petsc_matrix
(
nb_global_nodes
*
spatial_dimension
,
_symmetric
);
petsc_matrix
.
resize
(
dof_synchronizer
);
petsc_matrix
.
buildProfile
(
mesh
,
dof_synchronizer
,
spatial_dimension
);
petsc_matrix
.
add
(
K
,
1
);
petsc_matrix
.
performAssembly
();
petsc_matrix
.
saveMatrix
(
"profile.mtx"
);
delete
communicator
;
finalize
();
return
EXIT_SUCCESS
;
}
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