solid_mechanics_model.hh
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solid_mechanics_model.hh
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	/**
	* @file solid_mechanics_model.hh
	*
	* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
	* @author Daniel Pino Muñoz <daniel.pinomunoz@epfl.ch>
	* @author Nicolas Richart <nicolas.richart@epfl.ch>
	*
	* @date creation: Tue Jul 27 2010
	* @date last modification: Tue Jan 19 2016
	*
	* @brief Model of Solid Mechanics
	*
	* @section LICENSE
	*
	* Copyright (©) 2010-2012, 2014, 2015 EPFL (Ecole Polytechnique Fédérale de
	* Lausanne) Laboratory (LSMS - Laboratoire de Simulation en Mécanique des
	* Solides)
	*
	* Akantu is free software: you can redistribute it and/or modify it under the
	* terms of the GNU Lesser General Public License as published by the Free
	* Software Foundation, either version 3 of the License, or (at your option) any
	* later version.
	*
	* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
	* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
	* details.
	*
	* You should have received a copy of the GNU Lesser General Public License
	* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
	*
	*/
	/* -------------------------------------------------------------------------- */
	#include "boundary_condition.hh"
	#include "data_accessor.hh"
	#include "fe_engine.hh"
	#include "model.hh"
	#include "non_local_manager.hh"
	#include "solid_mechanics_model_event_handler.hh"
	/* -------------------------------------------------------------------------- */

	#ifndef __AKANTU_SOLID_MECHANICS_MODEL_HH__
	#define __AKANTU_SOLID_MECHANICS_MODEL_HH__

	namespace akantu {
	class Material;
	class MaterialSelector;
	class DumperIOHelper;
	class NonLocalManager;
	template <ElementKind kind, class IntegrationOrderFunctor>
	class IntegratorGauss;
	template <ElementKind kind> class ShapeLagrange;
	} // namespace akantu

	/* -------------------------------------------------------------------------- */
	namespace akantu {

	/* -------------------------------------------------------------------------- */
	class SolidMechanicsModel
	: public Model,
	public TemporarySwigDataAccessor<Element>,
	public DataAccessor<UInt>,
	public BoundaryCondition<SolidMechanicsModel>,
	public NonLocalManagerCallback,
	public EventHandlerManager<SolidMechanicsModelEventHandler> {

	/* ------------------------------------------------------------------------ */
	/* Constructors/Destructors */
	/* ------------------------------------------------------------------------ */
	public:
	class NewMaterialElementsEvent : public NewElementsEvent {
	public:
	AKANTU_GET_MACRO_NOT_CONST(MaterialList, material, Array<UInt> &);
	AKANTU_GET_MACRO(MaterialList, material, const Array<UInt> &);

	protected:
	Array<UInt> material;
	};

	using MyFEEngineType = FEEngineTemplate<IntegratorGauss, ShapeLagrange>;

	protected:
	using EventManager = EventHandlerManager<SolidMechanicsModelEventHandler>;

	public:
	SolidMechanicsModel(
	Mesh & mesh, UInt spatial_dimension = _all_dimensions,
	const ID & id = "solid_mechanics_model", const MemoryID & memory_id = 0,
	const ModelType model_type = ModelType::_solid_mechanics_model);

	~SolidMechanicsModel() override;

	/* ------------------------------------------------------------------------ */
	/* Methods */
	/* ------------------------------------------------------------------------ */
	protected:
	/// initialize completely the model
	void initFullImpl(
	const ModelOptions & options = SolidMechanicsModelOptions()) override;

	/// initialize all internal arrays for materials
	virtual void initMaterials();

	/// initialize the model
	void initModel() override;

	/// function to print the containt of the class
	void printself(std::ostream & stream, int indent = 0) const override;

	/// get some default values for derived classes
	std::tuple<ID, TimeStepSolverType>
	getDefaultSolverID(const AnalysisMethod & method) override;

	/* ------------------------------------------------------------------------ */
	/* Solver interface */
	/* ------------------------------------------------------------------------ */
	public:
	/// assembles the stiffness matrix,
	virtual void assembleStiffnessMatrix();
	/// assembles the internal forces in the array internal_forces
	virtual void assembleInternalForces();

	protected:
	/// callback for the solver, this adds f_{ext} - f_{int} to the residual
	void assembleResidual() override;

	/// get the type of matrix needed
	MatrixType getMatrixType(const ID & matrix_id) override;

	/// callback for the solver, this assembles different matrices
	void assembleMatrix(const ID & matrix_id) override;

	/// callback for the solver, this assembles the stiffness matrix
	void assembleLumpedMatrix(const ID & matrix_id) override;

	/// callback for the solver, this is called at beginning of solve
	void predictor() override;
	/// callback for the solver, this is called at end of solve
	void corrector() override;

	/// callback for the solver, this is called at beginning of solve
	void beforeSolveStep() override;
	/// callback for the solver, this is called at end of solve
	void afterSolveStep() override;

	/// Callback for the model to instantiate the matricees when needed
	void initSolver(TimeStepSolverType time_step_solver_type,
	NonLinearSolverType non_linear_solver_type) override;

	protected:
	/* ------------------------------------------------------------------------ */
	TimeStepSolverType getDefaultSolverType() const override;
	/* ------------------------------------------------------------------------ */
	ModelSolverOptions
	getDefaultSolverOptions(const TimeStepSolverType & type) const override;

	public:
	bool isDefaultSolverExplicit() {
	return method == _explicit_lumped_mass \|\|
	method == _explicit_consistent_mass;
	}

	protected:
	/// update the current position vector
	void updateCurrentPosition();

	/* ------------------------------------------------------------------------ */
	/* Materials (solid_mechanics_model_material.cc) */
	/* ------------------------------------------------------------------------ */
	public:
	/// register an empty material of a given type
	Material & registerNewMaterial(const ID & mat_name, const ID & mat_type,
	const ID & opt_param);

	/// reassigns materials depending on the material selector
	virtual void reassignMaterial();

	/// apply a constant eigen_grad_u on all quadrature points of a given material
	virtual void applyEigenGradU(const Matrix<Real> & prescribed_eigen_grad_u,
	const ID & material_name,
	const GhostType ghost_type = _not_ghost);

	protected:
	/// register a material in the dynamic database
	Material & registerNewMaterial(const ParserSection & mat_section);

	/// read the material files to instantiate all the materials
	void instantiateMaterials();

	/// set the element_id_by_material and add the elements to the good materials
	virtual void
	assignMaterialToElements(const ElementTypeMapArray<UInt> * filter = nullptr);

	/* ------------------------------------------------------------------------ */
	/* Mass (solid_mechanics_model_mass.cc) */
	/* ------------------------------------------------------------------------ */
	public:
	/// assemble the lumped mass matrix
	void assembleMassLumped();

	/// assemble the mass matrix for consistent mass resolutions
	void assembleMass();

	protected:
	/// assemble the lumped mass matrix for local and ghost elements
	void assembleMassLumped(GhostType ghost_type);

	/// assemble the mass matrix for either _ghost or _not_ghost elements
	void assembleMass(GhostType ghost_type);

	/// fill a vector of rho
	void computeRho(Array<Real> & rho, ElementType type, GhostType ghost_type);

	/// compute the kinetic energy
	Real getKineticEnergy();
	Real getKineticEnergy(const ElementType & type, UInt index);

	/// compute the external work (for impose displacement, the velocity should be
	/// given too)
	Real getExternalWork();

	/* ------------------------------------------------------------------------ */
	/* NonLocalManager inherited members */
	/* ------------------------------------------------------------------------ */
	protected:
	void initializeNonLocal() override;

	void updateDataForNonLocalCriterion(ElementTypeMapReal & criterion) override;

	void computeNonLocalStresses(const GhostType & ghost_type) override;

	void
	insertIntegrationPointsInNeighborhoods(const GhostType & ghost_type) override;

	/// update the values of the non local internal
	void updateLocalInternal(ElementTypeMapReal & internal_flat,
	const GhostType & ghost_type,
	const ElementKind & kind) override;

	/// copy the results of the averaging in the materials
	void updateNonLocalInternal(ElementTypeMapReal & internal_flat,
	const GhostType & ghost_type,
	const ElementKind & kind) override;

	/* ------------------------------------------------------------------------ */
	/* Data Accessor inherited members */
	/* ------------------------------------------------------------------------ */
	public:
	UInt getNbData(const Array<Element> & elements,
	const SynchronizationTag & tag) const override;

	void packData(CommunicationBuffer & buffer, const Array<Element> & elements,
	const SynchronizationTag & tag) const override;

	void unpackData(CommunicationBuffer & buffer, const Array<Element> & elements,
	const SynchronizationTag & tag) override;

	UInt getNbData(const Array<UInt> & dofs,
	const SynchronizationTag & tag) const override;

	void packData(CommunicationBuffer & buffer, const Array<UInt> & dofs,
	const SynchronizationTag & tag) const override;

	void unpackData(CommunicationBuffer & buffer, const Array<UInt> & dofs,
	const SynchronizationTag & tag) override;

	protected:
	void
	splitElementByMaterial(const Array<Element> & elements,
	std::vector<Array<Element>> & elements_per_mat) const;

	template <typename Operation>
	void splitByMaterial(const Array<Element> & elements, Operation && op) const;

	/* ------------------------------------------------------------------------ */
	/* Mesh Event Handler inherited members */
	/* ------------------------------------------------------------------------ */
	protected:
	void onNodesAdded(const Array<UInt> & nodes_list,
	const NewNodesEvent & event) override;
	void onNodesRemoved(const Array<UInt> & element_list,
	const Array<UInt> & new_numbering,
	const RemovedNodesEvent & event) override;
	void onElementsAdded(const Array<Element> & nodes_list,
	const NewElementsEvent & event) override;
	void onElementsRemoved(const Array<Element> & element_list,
	const ElementTypeMapArray<UInt> & new_numbering,
	const RemovedElementsEvent & event) override;
	void onElementsChanged(const Array<Element> &, const Array<Element> &,
	const ElementTypeMapArray<UInt> &,
	const ChangedElementsEvent &) override{};

	/* ------------------------------------------------------------------------ */
	/* Dumpable interface (kept for convenience) and dumper relative functions */
	/* ------------------------------------------------------------------------ */
	public:
	virtual void onDump();

	//! decide wether a field is a material internal or not
	bool isInternal(const std::string & field_name,
	const ElementKind & element_kind);
	#ifndef SWIG
	//! give the amount of data per element
	virtual ElementTypeMap<UInt>
	getInternalDataPerElem(const std::string & field_name,
	const ElementKind & kind);

	//! flatten a given material internal field
	ElementTypeMapArray<Real> &
	flattenInternal(const std::string & field_name, const ElementKind & kind,
	const GhostType ghost_type = _not_ghost);
	//! flatten all the registered material internals
	void flattenAllRegisteredInternals(const ElementKind & kind);
	#endif

	dumper::Field * createNodalFieldReal(const std::string & field_name,
	const std::string & group_name,
	bool padding_flag) override;

	dumper::Field * createNodalFieldBool(const std::string & field_name,
	const std::string & group_name,
	bool padding_flag) override;

	dumper::Field * createElementalField(const std::string & field_name,
	const std::string & group_name,
	bool padding_flag,
	const UInt & spatial_dimension,
	const ElementKind & kind) override;

	virtual void dump(const std::string & dumper_name);

	virtual void dump(const std::string & dumper_name, UInt step);

	virtual void dump(const std::string & dumper_name, Real time, UInt step);

	void dump() override;

	virtual void dump(UInt step);

	virtual void dump(Real time, UInt step);

	/* ------------------------------------------------------------------------ */
	/* Accessors */
	/* ------------------------------------------------------------------------ */
	public:
	/// return the dimension of the system space
	AKANTU_GET_MACRO(SpatialDimension, Model::spatial_dimension, UInt);

	/// set the value of the time step
	void setTimeStep(Real time_step, const ID & solver_id = "") override;

	/// get the value of the conversion from forces/ mass to acceleration
	AKANTU_GET_MACRO(F_M2A, f_m2a, Real);

	/// set the value of the conversion from forces/ mass to acceleration
	AKANTU_SET_MACRO(F_M2A, f_m2a, Real);

	/// get the SolidMechanicsModel::displacement vector
	AKANTU_GET_MACRO(Displacement, *displacement, Array<Real> &);

	/// get the SolidMechanicsModel::previous_displacement vector
	AKANTU_GET_MACRO(PreviousDisplacement, *previous_displacement, Array<Real> &);

	/// get the SolidMechanicsModel::current_position vector \warn only consistent
	/// after a call to SolidMechanicsModel::updateCurrentPosition
	const Array<Real> & getCurrentPosition();

	/// get the SolidMechanicsModel::increment vector \warn only consistent if
	/// SolidMechanicsModel::setIncrementFlagOn has been called before
	AKANTU_GET_MACRO(Increment, *displacement_increment, Array<Real> &);

	/// get the lumped SolidMechanicsModel::mass vector
	AKANTU_GET_MACRO(Mass, *mass, Array<Real> &);

	/// get the SolidMechanicsModel::velocity vector
	AKANTU_GET_MACRO(Velocity, *velocity, Array<Real> &);

	/// get the SolidMechanicsModel::acceleration vector, updated by
	/// SolidMechanicsModel::updateAcceleration
	AKANTU_GET_MACRO(Acceleration, *acceleration, Array<Real> &);

	/// get the SolidMechanicsModel::force vector (external forces)
	AKANTU_GET_MACRO(Force, *external_force, Array<Real> &);

	/// get the SolidMechanicsModel::internal_force vector (internal forces)
	AKANTU_GET_MACRO(InternalForce, *internal_force, Array<Real> &);

	/// get the SolidMechanicsModel::blocked_dofs vector
	AKANTU_GET_MACRO(BlockedDOFs, *blocked_dofs, Array<bool> &);

	/// get the value of the SolidMechanicsModel::increment_flag
	AKANTU_GET_MACRO(IncrementFlag, increment_flag, bool);

	/// get a particular material (by material index)
	inline Material & getMaterial(UInt mat_index);

	/// get a particular material (by material index)
	inline const Material & getMaterial(UInt mat_index) const;

	/// get a particular material (by material name)
	inline Material & getMaterial(const std::string & name);

	/// get a particular material (by material name)
	inline const Material & getMaterial(const std::string & name) const;

	/// get a particular material id from is name
	inline UInt getMaterialIndex(const std::string & name) const;

	/// give the number of materials
	inline UInt getNbMaterials() const { return materials.size(); }

	/// give the material internal index from its id
	Int getInternalIndexFromID(const ID & id) const;

	/// compute the stable time step
	Real getStableTimeStep();

	/// get the energies
	Real getEnergy(const std::string & energy_id);

	/// compute the energy for energy
	Real getEnergy(const std::string & energy_id, const ElementType & type,
	UInt index);

	AKANTU_GET_MACRO(MaterialByElement, material_index,
	const ElementTypeMapArray<UInt> &);

	/// vectors containing local material element index for each global element
	/// index
	AKANTU_GET_MACRO_BY_ELEMENT_TYPE_CONST(MaterialByElement, material_index,
	UInt);
	AKANTU_GET_MACRO_BY_ELEMENT_TYPE(MaterialByElement, material_index, UInt);
	AKANTU_GET_MACRO_BY_ELEMENT_TYPE_CONST(MaterialLocalNumbering,
	material_local_numbering, UInt);
	AKANTU_GET_MACRO_BY_ELEMENT_TYPE(MaterialLocalNumbering,
	material_local_numbering, UInt);

	AKANTU_GET_MACRO_NOT_CONST(MaterialSelector, *material_selector,
	MaterialSelector &);
	AKANTU_SET_MACRO(MaterialSelector, material_selector,
	std::shared_ptr<MaterialSelector>);

	/// Access the non_local_manager interface
	AKANTU_GET_MACRO(NonLocalManager, *non_local_manager, NonLocalManager &);

	/// get the FEEngine object to integrate or interpolate on the boundary
	FEEngine & getFEEngineBoundary(const ID & name = "") override;

	protected:
	friend class Material;

	protected:

	/// compute the stable time step
	Real getStableTimeStep(const GhostType & ghost_type);

	/* ------------------------------------------------------------------------ */
	/* Class Members */
	/* ------------------------------------------------------------------------ */
	protected:
	/// conversion coefficient form force/mass to acceleration
	Real f_m2a;

	/// displacements array
	Array<Real> * displacement;
	UInt displacement_release{0};

	/// displacements array at the previous time step (used in finite deformation)
	Array<Real> * previous_displacement{nullptr};

	/// increment of displacement
	Array<Real> * displacement_increment{nullptr};

	/// lumped mass array
	Array<Real> * mass{nullptr};

	/// Check if materials need to recompute the mass array
	bool need_to_reassemble_lumped_mass{true};
	/// Check if materials need to recompute the mass matrix
	bool need_to_reassemble_mass{true};

	/// velocities array
	Array<Real> * velocity{nullptr};

	/// accelerations array
	Array<Real> * acceleration{nullptr};

	/// accelerations array
	// Array<Real> * increment_acceleration;

	/// external forces array
	Array<Real> * external_force{nullptr};

	/// internal forces array
	Array<Real> * internal_force{nullptr};

	/// array specifing if a degree of freedom is blocked or not
	Array<bool> * blocked_dofs{nullptr};

	/// array of current position used during update residual
	Array<Real> * current_position{nullptr};
	UInt current_position_release{0};

	/// Arrays containing the material index for each element
	ElementTypeMapArray<UInt> material_index;

	/// Arrays containing the position in the element filter of the material
	/// (material's local numbering)
	ElementTypeMapArray<UInt> material_local_numbering;

	/// list of used materials
	std::vector<std::unique_ptr<Material>> materials;

	/// mapping between material name and material internal id
	std::map<std::string, UInt> materials_names_to_id;

	/// class defining of to choose a material
	std::shared_ptr<MaterialSelector> material_selector;

	/// flag defining if the increment must be computed or not
	bool increment_flag;

	/// tells if the material are instantiated
	bool are_materials_instantiated;

	using flatten_internal_map = std::map<std::pair<std::string, ElementKind>,
	ElementTypeMapArray<Real> *>;

	/// map a registered internals to be flattened for dump purposes
	flatten_internal_map registered_internals;

	/// non local manager
	std::unique_ptr<NonLocalManager> non_local_manager;
	};

	/* -------------------------------------------------------------------------- */
	namespace BC {
	namespace Neumann {
	using FromStress = FromHigherDim;
	using FromTraction = FromSameDim;
	} // namespace Neumann
	} // namespace BC

	} // namespace akantu

	/* -------------------------------------------------------------------------- */
	/* inline functions */
	/* -------------------------------------------------------------------------- */
	#include "material.hh"
	#include "parser.hh"

	#include "solid_mechanics_model_inline_impl.cc"
	#include "solid_mechanics_model_tmpl.hh"
	/* -------------------------------------------------------------------------- */

	#endif /* __AKANTU_SOLID_MECHANICS_MODEL_HH__ */

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